CsaV3_5G024230 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATTTCTTGGAAATTTGTACCTCCAAAATACAATCAGTTTCAGATAATATCAGGTCTCTCTCCCCGCCCCGCTTCTGCTCGTTTTAATTACTCAAGCGTCACTGACCCTAACACTAAAGTCACTTTATTACAAGGTTCTCCATGCCATTCTGTTGAGTCAGTGCAGAAGCTATCAAATACTGAAATTATCTCCCCTTATAGTGTCAGCAGTGAAGACTCTCTGGGTTTAACTTACATTCAAGATGATAATGCAAATGTTGAAATTGAAGCAGTGGATCTAATTTCCCTTTTCGAAGTGGAAGATGGTGTTTTTAGTAATTTTCCTTGCTCCTCCCCAATCAAATAA ATTTCTTGGAAATTTGTACCTCCAAAATACAATCAGTTTCAGATAATATCAGGTCTCTCTCCCCGCCCCGCTTCTGCTCGTTTTAATTACTCAAGCGTCACTGACCCTAACACTAAAGTCACTTTATTACAAGGTTCTCCATGCCATTCTGTTGAGTCAGTGCAGAAGCTATCAAATACTGAAATTATCTCCCCTTATAGTGTCAGCAGTGAAGACTCTCTGGGTTTAACTTACATTCAAGATGATAATGCAAATGTTGAAATTGAAGCAGTGGATCTAATTTCCCTTTTCGAAGTGGAAGATGGTGTTTTTAGTAATTTTCCTTGCTCCTCCCCAATCAAATAA ATTTCTTGGAAATTTGTACCTCCAAAATACAATCAGTTTCAGATAATATCAGGTCTCTCTCCCCGCCCCGCTTCTGCTCGTTTTAATTACTCAAGCGTCACTGACCCTAACACTAAAGTCACTTTATTACAAGGTTCTCCATGCCATTCTGTTGAGTCAGTGCAGAAGCTATCAAATACTGAAATTATCTCCCCTTATAGTGTCAGCAGTGAAGACTCTCTGGGTTTAACTTACATTCAAGATGATAATGCAAATGTTGAAATTGAAGCAGTGGATCTAATTTCCCTTTTCGAAGTGGAAGATGGTGTTTTTAGTAATTTTCCTTGCTCCTCCCCAATCAAATAA ISWKFVPPKYNQFQIISGLSPRPASARFNYSSVTDPNTKVTLLQGSPCHSVESVQKLSNTEIISPYSVSSEDSLGLTYIQDDNANVEIEAVDLISLFEVEDGVFSNFPCSSPIK* Homology
BLAST of CsaV3_5G024230 vs. NCBI nr
Match: KAE8648438.1 (hypothetical protein Csa_008077, partial [Cucumis sativus]) HSP 1 Score: 229.6 bits (584), Expect = 1.4e-56 Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0
BLAST of CsaV3_5G024230 vs. NCBI nr
Match: TYK08108.1 (protein ENHANCED DOWNY MILDEW 2 [Cucumis melo var. makuwa]) HSP 1 Score: 135.6 bits (340), Expect = 2.8e-28 Identity = 71/100 (71.00%), Postives = 77/100 (77.00%), Query Frame = 0
BLAST of CsaV3_5G024230 vs. NCBI nr
Match: KAE8650473.1 (hypothetical protein Csa_011613, partial [Cucumis sativus]) HSP 1 Score: 111.3 bits (277), Expect = 5.6e-21 Identity = 57/64 (89.06%), Postives = 60/64 (93.75%), Query Frame = 0
BLAST of CsaV3_5G024230 vs. NCBI nr
Match: KAE8648358.1 (hypothetical protein Csa_023117 [Cucumis sativus]) HSP 1 Score: 107.1 bits (266), Expect = 1.0e-19 Identity = 62/105 (59.05%), Postives = 68/105 (64.76%), Query Frame = 0
BLAST of CsaV3_5G024230 vs. NCBI nr
Match: TYK28317.1 (transportin-3 isoform X2 [Cucumis melo var. makuwa]) HSP 1 Score: 104.8 bits (260), Expect = 5.2e-19 Identity = 55/91 (60.44%), Postives = 66/91 (72.53%), Query Frame = 0
BLAST of CsaV3_5G024230 vs. ExPASy TrEMBL
Match: A0A5D3CA98 (Protein ENHANCED DOWNY MILDEW 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002720 PE=4 SV=1) HSP 1 Score: 135.6 bits (340), Expect = 1.3e-28 Identity = 71/100 (71.00%), Postives = 77/100 (77.00%), Query Frame = 0
BLAST of CsaV3_5G024230 vs. ExPASy TrEMBL
Match: A0A5D3DWV6 (Transportin-3 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001420 PE=4 SV=1) HSP 1 Score: 104.8 bits (260), Expect = 2.5e-19 Identity = 55/91 (60.44%), Postives = 66/91 (72.53%), Query Frame = 0
BLAST of CsaV3_5G024230 vs. ExPASy TrEMBL
Match: A0A5D3BP61 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G001200 PE=4 SV=1) HSP 1 Score: 82.0 bits (201), Expect = 1.7e-12 Identity = 39/56 (69.64%), Postives = 46/56 (82.14%), Query Frame = 0
BLAST of CsaV3_5G024230 vs. ExPASy TrEMBL
Match: A0A5A7TKC9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G002950 PE=4 SV=1) HSP 1 Score: 76.3 bits (186), Expect = 9.6e-11 Identity = 42/75 (56.00%), Postives = 50/75 (66.67%), Query Frame = 0
BLAST of CsaV3_5G024230 vs. ExPASy TrEMBL
Match: A0A5D3C234 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G001090 PE=4 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 1.3e-10 Identity = 42/75 (56.00%), Postives = 50/75 (66.67%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
|