CsaV3_5G024230 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G024230
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionProtein ENHANCED DOWNY MILDEW 2
Locationchr5: 18993194 .. 18993538 (-)
RNA-Seq ExpressionCsaV3_5G024230
SyntenyCsaV3_5G024230
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTCTTGGAAATTTGTACCTCCAAAATACAATCAGTTTCAGATAATATCAGGTCTCTCTCCCCGCCCCGCTTCTGCTCGTTTTAATTACTCAAGCGTCACTGACCCTAACACTAAAGTCACTTTATTACAAGGTTCTCCATGCCATTCTGTTGAGTCAGTGCAGAAGCTATCAAATACTGAAATTATCTCCCCTTATAGTGTCAGCAGTGAAGACTCTCTGGGTTTAACTTACATTCAAGATGATAATGCAAATGTTGAAATTGAAGCAGTGGATCTAATTTCCCTTTTCGAAGTGGAAGATGGTGTTTTTAGTAATTTTCCTTGCTCCTCCCCAATCAAATAA

mRNA sequence

ATTTCTTGGAAATTTGTACCTCCAAAATACAATCAGTTTCAGATAATATCAGGTCTCTCTCCCCGCCCCGCTTCTGCTCGTTTTAATTACTCAAGCGTCACTGACCCTAACACTAAAGTCACTTTATTACAAGGTTCTCCATGCCATTCTGTTGAGTCAGTGCAGAAGCTATCAAATACTGAAATTATCTCCCCTTATAGTGTCAGCAGTGAAGACTCTCTGGGTTTAACTTACATTCAAGATGATAATGCAAATGTTGAAATTGAAGCAGTGGATCTAATTTCCCTTTTCGAAGTGGAAGATGGTGTTTTTAGTAATTTTCCTTGCTCCTCCCCAATCAAATAA

Coding sequence (CDS)

ATTTCTTGGAAATTTGTACCTCCAAAATACAATCAGTTTCAGATAATATCAGGTCTCTCTCCCCGCCCCGCTTCTGCTCGTTTTAATTACTCAAGCGTCACTGACCCTAACACTAAAGTCACTTTATTACAAGGTTCTCCATGCCATTCTGTTGAGTCAGTGCAGAAGCTATCAAATACTGAAATTATCTCCCCTTATAGTGTCAGCAGTGAAGACTCTCTGGGTTTAACTTACATTCAAGATGATAATGCAAATGTTGAAATTGAAGCAGTGGATCTAATTTCCCTTTTCGAAGTGGAAGATGGTGTTTTTAGTAATTTTCCTTGCTCCTCCCCAATCAAATAA

Protein sequence

ISWKFVPPKYNQFQIISGLSPRPASARFNYSSVTDPNTKVTLLQGSPCHSVESVQKLSNTEIISPYSVSSEDSLGLTYIQDDNANVEIEAVDLISLFEVEDGVFSNFPCSSPIK*
Homology
BLAST of CsaV3_5G024230 vs. NCBI nr
Match: KAE8648438.1 (hypothetical protein Csa_008077, partial [Cucumis sativus])

HSP 1 Score: 229.6 bits (584), Expect = 1.4e-56
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0

Query: 1   ISWKFVPPKYNQFQIISGLSPRPASARFNYSSVTDPNTKVTLLQGSPCHSVESVQKLSNT 60
           ISWKFVPPKYNQFQIISGLSPRPASARFNYSSVTDPNTKVTLLQGSPCHSVESVQKLSNT
Sbjct: 1   ISWKFVPPKYNQFQIISGLSPRPASARFNYSSVTDPNTKVTLLQGSPCHSVESVQKLSNT 60

Query: 61  EIISPYSVSSEDSLGLTYIQDDNANVEIEAVDLISLFEVEDGVFSNFPCSSPIK 115
           EIISPYSVSSEDSLGLTYIQDDNANVEIEAVDLISLFEVEDGVFSNFPCSSPIK
Sbjct: 61  EIISPYSVSSEDSLGLTYIQDDNANVEIEAVDLISLFEVEDGVFSNFPCSSPIK 114

BLAST of CsaV3_5G024230 vs. NCBI nr
Match: TYK08108.1 (protein ENHANCED DOWNY MILDEW 2 [Cucumis melo var. makuwa])

HSP 1 Score: 135.6 bits (340), Expect = 2.8e-28
Identity = 71/100 (71.00%), Postives = 77/100 (77.00%), Query Frame = 0

Query: 15  IISGLSPRPASARFNYSSVTDPNTKVTLLQGSPCHSVESVQKLSNTEIISPYSVSSEDSL 74
           II  +SP PA  RFNYSS T PNTK+TL++GS C SVES+QKL N EIISPYSVSSEDS 
Sbjct: 246 IIGSVSPHPAPVRFNYSSFTYPNTKITLIRGSSCQSVESIQKLLNIEIISPYSVSSEDSP 305

Query: 75  GLTYIQDDNANVEIEAVDLISLFEVEDGVFSNFPCSSPIK 115
           GL   Q+D AN EIEAVDLISLFE E G   NFPC SPIK
Sbjct: 306 GLLQAQEDKANFEIEAVDLISLFEGECGGSVNFPCFSPIK 345

BLAST of CsaV3_5G024230 vs. NCBI nr
Match: KAE8650473.1 (hypothetical protein Csa_011613, partial [Cucumis sativus])

HSP 1 Score: 111.3 bits (277), Expect = 5.6e-21
Identity = 57/64 (89.06%), Postives = 60/64 (93.75%), Query Frame = 0

Query: 51  VESVQKLSNTEIISPYSVSSEDSLGLTYIQDDNANVEIEAVDLISLFEVEDGVFSNFPCS 110
           +ESVQKLSNTEIISPYSVSSEDS GLT+IQDDNAN EIEAVDLI LF+VE GVFSNFPCS
Sbjct: 136 IESVQKLSNTEIISPYSVSSEDSPGLTHIQDDNANDEIEAVDLIFLFKVEGGVFSNFPCS 195

Query: 111 SPIK 115
           SPIK
Sbjct: 196 SPIK 199

BLAST of CsaV3_5G024230 vs. NCBI nr
Match: KAE8648358.1 (hypothetical protein Csa_023117 [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 1.0e-19
Identity = 62/105 (59.05%), Postives = 68/105 (64.76%), Query Frame = 0

Query: 2   SWKFVPPKYNQFQIISGLSPRPASARFNYSSVTDPNTKVTLLQGSPCHSVESVQKLSNTE 61
           +WK+VPP+YNQ QII                                 SVES+QKLSNTE
Sbjct: 52  AWKYVPPQYNQLQII---------------------------------SVESMQKLSNTE 111

Query: 62  IISPYSVSSEDSLGLTYIQDDNANVEIEAVDLISLFEVEDGVFSN 107
           IISPYSVSSEDS GLT+IQDDNANVEIEA+DLI LFEVE GVFSN
Sbjct: 112 IISPYSVSSEDSPGLTHIQDDNANVEIEAMDLIFLFEVEGGVFSN 123

BLAST of CsaV3_5G024230 vs. NCBI nr
Match: TYK28317.1 (transportin-3 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 104.8 bits (260), Expect = 5.2e-19
Identity = 55/91 (60.44%), Postives = 66/91 (72.53%), Query Frame = 0

Query: 19  LSPRPASAR-FNYSSVTDPNTKVTLLQGSPCHSVESVQKLSNTEIISPYSVSSEDSLGLT 78
           L P P++ + FNYSS  DPNTK+TLLQGSPC SV+S QK SNTEI+SP SVSSE+S GL 
Sbjct: 330 LRPIPSAPKLFNYSSFIDPNTKITLLQGSPCQSVDSFQKKSNTEIVSPCSVSSEESAGLK 389

Query: 79  YIQDDNANVEIEAVDLISLFEVEDGVFSNFP 109
           Y      N EIEAVDLI+L+E++D      P
Sbjct: 390 YTYKGETNAEIEAVDLITLYEMDDAGVGTTP 420

BLAST of CsaV3_5G024230 vs. ExPASy TrEMBL
Match: A0A5D3CA98 (Protein ENHANCED DOWNY MILDEW 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002720 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.3e-28
Identity = 71/100 (71.00%), Postives = 77/100 (77.00%), Query Frame = 0

Query: 15  IISGLSPRPASARFNYSSVTDPNTKVTLLQGSPCHSVESVQKLSNTEIISPYSVSSEDSL 74
           II  +SP PA  RFNYSS T PNTK+TL++GS C SVES+QKL N EIISPYSVSSEDS 
Sbjct: 246 IIGSVSPHPAPVRFNYSSFTYPNTKITLIRGSSCQSVESIQKLLNIEIISPYSVSSEDSP 305

Query: 75  GLTYIQDDNANVEIEAVDLISLFEVEDGVFSNFPCSSPIK 115
           GL   Q+D AN EIEAVDLISLFE E G   NFPC SPIK
Sbjct: 306 GLLQAQEDKANFEIEAVDLISLFEGECGGSVNFPCFSPIK 345

BLAST of CsaV3_5G024230 vs. ExPASy TrEMBL
Match: A0A5D3DWV6 (Transportin-3 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001420 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.5e-19
Identity = 55/91 (60.44%), Postives = 66/91 (72.53%), Query Frame = 0

Query: 19  LSPRPASAR-FNYSSVTDPNTKVTLLQGSPCHSVESVQKLSNTEIISPYSVSSEDSLGLT 78
           L P P++ + FNYSS  DPNTK+TLLQGSPC SV+S QK SNTEI+SP SVSSE+S GL 
Sbjct: 330 LRPIPSAPKLFNYSSFIDPNTKITLLQGSPCQSVDSFQKKSNTEIVSPCSVSSEESAGLK 389

Query: 79  YIQDDNANVEIEAVDLISLFEVEDGVFSNFP 109
           Y      N EIEAVDLI+L+E++D      P
Sbjct: 390 YTYKGETNAEIEAVDLITLYEMDDAGVGTTP 420

BLAST of CsaV3_5G024230 vs. ExPASy TrEMBL
Match: A0A5D3BP61 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G001200 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.7e-12
Identity = 39/56 (69.64%), Postives = 46/56 (82.14%), Query Frame = 0

Query: 23  PASARFNYSSVTDPNTKVTLLQGSPCHSVESVQKLSNTEIISPYSVSSEDSLGLTY 79
           PA   F+YSS TDPNTK+ LL+GSPCHSV+SV K SNTE++SPYS SSE+S GL Y
Sbjct: 137 PAPKLFSYSSFTDPNTKIILLRGSPCHSVDSVMKKSNTELVSPYSGSSEESAGLKY 192

BLAST of CsaV3_5G024230 vs. ExPASy TrEMBL
Match: A0A5A7TKC9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G002950 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 9.6e-11
Identity = 42/75 (56.00%), Postives = 50/75 (66.67%), Query Frame = 0

Query: 23  PASARFNYSSVTDPNTKVTLLQGSPCHSVESVQKLSNTEIISPYSVSSEDSLGLTYIQDD 82
           PA   FNYSS  DPNTKVTLL+GSPCHSV S +K ++ EI S +SV SE S  L  + D 
Sbjct: 178 PAPKLFNYSSFMDPNTKVTLLRGSPCHSVVSTKKQADLEIDSSFSVRSEGSTSLRCLDDH 237

Query: 83  NANVEIEAVDLISLF 98
            A  EI+ +DL  LF
Sbjct: 238 KAFAEIKGMDLNVLF 252

BLAST of CsaV3_5G024230 vs. ExPASy TrEMBL
Match: A0A5D3C234 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G001090 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.3e-10
Identity = 42/75 (56.00%), Postives = 50/75 (66.67%), Query Frame = 0

Query: 23   PASARFNYSSVTDPNTKVTLLQGSPCHSVESVQKLSNTEIISPYSVSSEDSLGLTYIQDD 82
            PA   FNYSS  DPNTKVTLL+GSPCHSV S +K ++ EI S +SV SE S  L  + D 
Sbjct: 1302 PAPKIFNYSSFMDPNTKVTLLRGSPCHSVVSTKKQADLEIDSSFSVRSEGSTSLRCLDDH 1361

Query: 83   NANVEIEAVDLISLF 98
             A  EI+ +DL  LF
Sbjct: 1362 KAFAEIKGMDLNVLF 1376

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8648438.11.4e-56100.00hypothetical protein Csa_008077, partial [Cucumis sativus][more]
TYK08108.12.8e-2871.00protein ENHANCED DOWNY MILDEW 2 [Cucumis melo var. makuwa][more]
KAE8650473.15.6e-2189.06hypothetical protein Csa_011613, partial [Cucumis sativus][more]
KAE8648358.11.0e-1959.05hypothetical protein Csa_023117 [Cucumis sativus][more]
TYK28317.15.2e-1960.44transportin-3 isoform X2 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CA981.3e-2871.00Protein ENHANCED DOWNY MILDEW 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5D3DWV62.5e-1960.44Transportin-3 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5D3BP611.7e-1269.64Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TKC99.6e-1156.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3C2341.3e-1056.00Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G024230.1CsaV3_5G024230.1mRNA