CsaV3_5G023510 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G023510
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionRetrotransposable element Tf2
Locationchr5: 17877348 .. 17877500 (-)
RNA-Seq ExpressionCsaV3_5G023510
SyntenyCsaV3_5G023510
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTGAAGCTTTGGCTCTTCTTCGCTTATGTGGTATCATTCGTTTCATTAGCAGCATCGGTTGGACTCTTGATACAAGATTCAGTAGTAAAAGCCGGGCCATCAGTGTGGACAGGAGTTGCAGGAGTGTTGCAGTGTGTGTTTGTGTTGGTTAG

mRNA sequence

GTTGAAGCTTTGGCTCTTCTTCGCTTATGTGGTATCATTCGTTTCATTAGCAGCATCGGTTGGACTCTTGATACAAGATTCAGTAGTAAAAGCCGGGCCATCAGTGTGGACAGGAGTTGCAGGAGTGTTGCAGTGTGTGTTTGTGTTGGTTAG

Coding sequence (CDS)

GTTGAAGCTTTGGCTCTTCTTCGCTTATGTGGTATCATTCGTTTCATTAGCAGCATCGGTTGGACTCTTGATACAAGATTCAGTAGTAAAAGCCGGGCCATCAGTGTGGACAGGAGTTGCAGGAGTGTTGCAGTGTGTGTTTGTGTTGGTTAG

Protein sequence

VEALALLRLCGIIRFISSIGWTLDTRFSSKSRAISVDRSCRSVAVCVCVG*
Homology
[Close]
BLAST of CsaV3_5G023510 vs. NCBI nr
Match: KAE8648408.1 (hypothetical protein Csa_009297, partial [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 7.4e-18
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 1  VEALALLRLCGIIRFISSIGWTLDTRFSSKSRAISVDRSCRSVAVCVCVG 51
          VEALALLRLCGIIRFISSIGWTLDTRFSSKSRAISVDRSCRSVAVCVCVG
Sbjct: 1  VEALALLRLCGIIRFISSIGWTLDTRFSSKSRAISVDRSCRSVAVCVCVG 50

[Close]
BLAST of CsaV3_5G023510 vs. NCBI nr
Match: KAA0067390.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK26531.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 1.7e-09
Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = 0 

Query: 1   VEALALLRLCGIIRFISSIGWTLDTRFSSKSRAISVDRSCRSV 44
           VEALALLRLCGIIRFISSI  +LDTRFSSK+ AISVDRSCRSV
Sbjct: 200 VEALALLRLCGIIRFISSISGSLDTRFSSKNWAISVDRSCRSV 242

[Close]
BLAST of CsaV3_5G023510 vs. ExPASy TrEMBL
Match: A0A5D3DS24 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001190 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 8.0e-10
Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = 0 

Query: 1   VEALALLRLCGIIRFISSIGWTLDTRFSSKSRAISVDRSCRSV 44
           VEALALLRLCGIIRFISSI  +LDTRFSSK+ AISVDRSCRSV
Sbjct: 200 VEALALLRLCGIIRFISSISGSLDTRFSSKNWAISVDRSCRSV 242

The following BLAST results are available for this feature:
BLAST of CsaV3_5G023510 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8648408.17.4e-18100.00hypothetical protein Csa_009297, partial [Cucumis sativus][more]
KAA0067390.11.7e-0988.37Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK26531.1 Retrotransp... [more]
BLAST of CsaV3_5G023510 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G023510 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DS248.0e-1088.37Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
BLAST of CsaV3_5G023510 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G023510.1CsaV3_5G023510.1mRNA