CsaV3_5G023270 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G023270
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5: 17522899 .. 17523456 (-)
RNA-Seq ExpressionCsaV3_5G023270
SyntenyCsaV3_5G023270
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATCGGAGAAGAAAATGAATGAAATGGAAGAGGAAGAAGAAGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGTTCTTCTATTAGCTATGTCGTCCGCTGACGATGGTGACACGCGGCGACTGGAGAAGAGAGGACTCAATGGGGAAACGACTTTTAAATATGGAGGTCACCGGACCGGACGGGTGGGTGGTTAAATAGTTTAGTTGAATAAAAATATAAAAAGAAATAGTAATTAGTTTAAATTAATTGAAGGGGATTTTGTTTGGATGGGGGAGGGTGTATGAAATAGACTGGGGAAGGGCGCGGGTTTGGTGGAAGATATAGAAGGTGGGTGAGAGGGTTCCACAACGTGGGGACGGATGAGGGTTTGACGGGAACCAGGAACTCCCCTCCCAACCCCTTTATATATATATATATATATATATATATATTTTTTAAAAAAAAAATTACCGGATTTTTTGTTATTAATTAAAATGTGAAATGTGGTGTGTGTCTTTGTGTGTCTTTGTGTAGGAAGGAAAAGAAAAAACATCTTTGGTAGGAATGATATGTAA

mRNA sequence

ATGAAATCGGAGAAGAAAATGAATGAAATGGAAGAGGAAGAAGAAGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGTTCTTCTATTAGCTATGTCGTCCGCTGACGATGGTGACACGCGGCGACTGGAGAAGAGAGGACTCAATGGGGAAACGACTTTTAAATATGGAGGTCACCGGACCGGACGGACTGGGGAAGGGCGCGGGTTTGGTGGAAGATATAGAAGGTGGGTGAGAGGGTTCCACAACGTGGGGACGGATGAGGGAAGGAAAAGAAAAAACATCTTTGGTAGGAATGATATGTAA

Coding sequence (CDS)

ATGAAATCGGAGAAGAAAATGAATGAAATGGAAGAGGAAGAAGAAGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGTTCTTCTATTAGCTATGTCGTCCGCTGACGATGGTGACACGCGGCGACTGGAGAAGAGAGGACTCAATGGGGAAACGACTTTTAAATATGGAGGTCACCGGACCGGACGGACTGGGGAAGGGCGCGGGTTTGGTGGAAGATATAGAAGGTGGGTGAGAGGGTTCCACAACGTGGGGACGGATGAGGGAAGGAAAAGAAAAAACATCTTTGGTAGGAATGATATGTAA

Protein sequence

MKSEKKMNEMEEEEEGGGGGGGGGGVLLLAMSSADDGDTRRLEKRGLNGETTFKYGGHRTGRTGEGRGFGGRYRRWVRGFHNVGTDEGRKRKNIFGRNDM*
Homology
[Close]
BLAST of CsaV3_5G023270 vs. NCBI nr
Match: KGN50971.1 (hypothetical protein Csa_008157 [Cucumis sativus])

HSP 1 Score: 200.3 bits (508), Expect = 8.0e-48
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MKSEKKMNEMEEEEEGGGGGGGGGGVLLLAMSSADDGDTRRLEKRGLNGETTFKYGGHRT 60
           MKSEKKMNEMEEEEEGGGGGGGGGGVLLLAMSSADDGDTRRLEKRGLNGETTFKYGGHRT
Sbjct: 1   MKSEKKMNEMEEEEEGGGGGGGGGGVLLLAMSSADDGDTRRLEKRGLNGETTFKYGGHRT 60

Query: 61  GRTGEGRGFGGRYRRWVRGFHNVGTDEGRKRKNIFGRNDM 101
           GRTGEGRGFGGRYRRWVRGFHNVGTDEGRKRKNIFGRNDM
Sbjct: 61  GRTGEGRGFGGRYRRWVRGFHNVGTDEGRKRKNIFGRNDM 100

[Close]
BLAST of CsaV3_5G023270 vs. ExPASy TrEMBL
Match: A0A0A0KTE4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G381770 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 3.9e-48
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MKSEKKMNEMEEEEEGGGGGGGGGGVLLLAMSSADDGDTRRLEKRGLNGETTFKYGGHRT 60
           MKSEKKMNEMEEEEEGGGGGGGGGGVLLLAMSSADDGDTRRLEKRGLNGETTFKYGGHRT
Sbjct: 1   MKSEKKMNEMEEEEEGGGGGGGGGGVLLLAMSSADDGDTRRLEKRGLNGETTFKYGGHRT 60

Query: 61  GRTGEGRGFGGRYRRWVRGFHNVGTDEGRKRKNIFGRNDM 101
           GRTGEGRGFGGRYRRWVRGFHNVGTDEGRKRKNIFGRNDM
Sbjct: 61  GRTGEGRGFGGRYRRWVRGFHNVGTDEGRKRKNIFGRNDM 100

The following BLAST results are available for this feature:
BLAST of CsaV3_5G023270 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50971.18.0e-48100.00hypothetical protein Csa_008157 [Cucumis sativus][more]
BLAST of CsaV3_5G023270 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G023270 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KTE43.9e-48100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G381770 PE=4 SV=1[more]
BLAST of CsaV3_5G023270 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..71

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G023270.1CsaV3_5G023270.1mRNA