CsaV3_5G023190 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G023190
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Zinc finger BED domain-containing protein RICESLEEPER 2-like
Location	chr5: 17413634 .. 17417914 (-)
RNA-Seq Expression	CsaV3_5G023190
Synteny	CsaV3_5G023190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTATTACGAATTTACGCGTCCCTCTCCCTCAGACCCTCCCTTCCTTCCGTCGTTCTCTGCGTCTCCCTTTCCCTCGCAGCTTGCGGAACACCTTTCGCCTCTTCCTCTCCCTCTGCAACCGCCGACATCTCCTTCTTCGTTTGATCTCTCTGCCATCTCCTTCTTTGTCTGATCTCTACGGCATCTCCTTCATCATCTGATTTATCCGTCTCAAATCTGTCTTCTCCTGCATCTTCTTCTTGCGTCTCCTCCTCCGTTTCAAATCCGAGACACATCTATTTGTCCAAAATCGAGACGCATCTCAAATTTCAATCCCTTCGATCTATCTTACTCTCAGTTTGTCTATCTTCAACCGACATCAACTGCCTCTCAAATTTCTTTGATTTTGCACTGTTTAAGCCAAGGTAATTTCTTATGATTTTCTTGCATCTCGAACAAACTAAGAGAAAATAAATCTTTATTCACACATTTGCATCAGTACTTAACAATGTCTGCATGAATTCTTAAATATCCTCTTTATTTATCTTCACAATTTCACATGCTTTCGTATCTGTATAATGGACACAATATTTTTAGGTTGACAGACATATTTATTTTTTCACAATTTCACCATAGTATGTTGACAGTACATATTTATTTTTTGAGTTTGTTGAGACAGTAGCATAAATATTGAAATAGCACAAGTATTGAAGGTTAACACTAGCGTAATTCTATTTTGAATTTGTTGAGACAGTAGCATAAATATTGAAATATTGACAGTAGCATTATTCTATTGAGCTTGTGATTTCGTTGTGGTTGTCTTGGTGTAACTTTGTTGTGGGTGATTGGGTGATCTAACCTTAGTTTTTTATATGTTTAGAACATTTTACAAGTAATGGACAACATAGTGAAACTAGCCCTAGCCCTAGTCCTAGTCCTGCCCCTTCCACTAATAATGATGTGAGTTCAAATAAACCAGCACTACCCGATAAGAAGAGAGCTAGAGTCACTAAGAAGACAACTTTCACTGTATGGGATCACTTCAAAAAGTTGGAAGAGAATAGTTCTAGGTGCACATGCAATTATTGTCATAAAGAATATTGTTATGATACTACCTCATGTGGAACTAGCACATTATGGAAGCACTTAAAAAATCAATGTAAGAAGTACCCATATAAGGAAGTAGAAACATGACAAACTATTTTGACTCTTCAACCTTCCACTGATGGAAAAAGTGGTAGTAATTTTGTGACTACTATTTTTAGTCAACAATTATGTAGAGAAACATGTGCTAAGATGATAATTGTTGATGAGTTGCCATTCAAGTTTATCGAGAATTATGGATTTATACATTTTTGTAGAGTGACTTGTTCTAAGTTTGACCCTTCTTCAAGAGTAACAATTCTCAAAGGGTATGTTTGACAACTGACACATGGACTTCTTTGCAAAATGTTAACTACATGGTACTCACTGCACACTTCATTGATTTAGATTGGGTTTTGCATAAAATGATTTTAAACTTTTCTCAAGTTACTAACCACAAGGATGATACTATTGGAAAGCTTATTGAGAGTTGTTTATTGGAATGGAGGATTGATAAAGTCTTTTCTATAAATGTTGATAATGCAAGTTCGAATGAAGGAGCAATTTCGTATATTAAGAAAAGACTTAGAAGTTGGAAAACCTTAATCTTGGAAGATGAACTGTTACACATGAGGAGTTGTGCCCACATAATTAATTTGATTGTAAATGAAGGATTGAGAGAAATGCATGATTCCATTGCTCGTGTTTGTAATCTTGTACGTTACGTTAGATCATCCCTTAAAAGATTGACAAAGTTTAAAACTTGTGTGGAGCAAGAGAAAATTGATTGAAAAGCTCTTGTTTGTTTAGATGTTCCAACAAGATGGAATTCTACTTATCTTATGCTTGAGCATGCACTTAAATTTGAAAAAGCTTTTCAAATATTAGAGGAATAAGAGTTGGATTATCAAGACTATTTTTCAGAATATGAACATGGGAAGAAGAGGAATGAGCCACCAACTAATTCTGATTGGAAAAATGTTGAAGTGTTTGTCATGTTTTTGAAGATGTTCTACAATGTCACTATAAGATTAATGTCACTAATAAGATTAGTGGTTCTATATATATGACTGCCAATTCTTTTTTTCATGAGATGTGGGGGATTAATGATCTTTTAATTGGTTAGAGCAGTGAATATAATTATATTTTACATAATATGACTATAAATATGAAGTCAAAGTATGACAAGTATTGTGGTTCAATTGAGAAAATTAACAAGCTTGTATTTCTAGTTGTGGTGCTTGATCCTCGATATAAATTGGACTACGTTAACTTTTGATTTGAAAGTATACATGATGATGTTATGGTTAAAGCTCTTGTAAGATTGAAGCTTATTTGATGCGATTGTACAATTTTTACAAATCACAAGTTGATGACTCTGTCTTTCGCAATGATTTGCGTGGTCAAGATGTTGTTTGTGAACAAGTAGAATCAAGTGATAATTTGAGACTATTGAGTTCGAGAGCTACAGTGGAAACTGACGCGTGTTGTAGAGTATTATCACGCTACAAGAGAAAAAGACAAGTACAAAATACTTTAGAATTGAGGAATGATGTTGATCGGTATTTATCTGACCCTTGTGAGGAGTTAAATGATCAGTTTGATGTTCTAACTTGGTGGAAATTGAATGGGGCTAAATACCGAATTCTATCAAAAATTGCTCTAGATAGTTTTGTCGTTCTGGTGTCTACTGCGGCTTCTAAATCTGCATTCAGTACTGGAGGAAGGATTTTGGATTCTTTTAGGAGTTCTTTATCACCTAAAACAGTGGAAGCTTTGATTTGTACACAAAACTGGATTTGTGGCAAAACAACCTTATTGGATCTTTGTCCATAGCCCGAAGGAATGAAAATTTGTGAAAAAATTGAGAACGGTAAGTCTCTAACTTTCTTTTATTTTTACTGAAAATTTTATACTTAAATAGTTATACGACACTTTATAATTTTAATTTGTTTTTTTTAGATAGTATCAAGTCTTCCATCACGTCACAAACATGATATATGGGTTGGGAATTTTCATGGTAAGTTACTAAGTTGGATATTGTATTTTTGTCATTTTATTTATTTTATATATTTTAAACTACTTACTTTGTGTGCTTTTTAAATTTTTAAGACAAATTTGAATGCTTGTAATGCTTGAATGGACTTCAAATTTATATTTAGTTGTATCTTGAACTTTATTATTCATTTAGTATTAAAAATGAACTTCATGAACATTTATGGGTAATTTTTGGATTTATGTATTTTAAGAACTTCGAATTTATTTGTGTTTGTAACTATGAATTTATTTGTGTTTGCAATTTTGAATTTATTTGTGTTTGTATTGAACTATTATATCTTGGTCCCATTGATTTTTGTATTTTATATTATGTGTATAATACATATCTGTTGAGTATATATGTGATGAATGAATCAGGGACTTTTTATTCGTGATATCTAAATGGAATTGAAATCCAATTCACTAGAAATGAACGAAATGATGATAACATTCCTGATGATGAGGTAGTTGGTGAATTTGAAGTGTTCGGGCAGAGAGTACGACCACTAGGGGCGCTAACTTTACAAACTCTATCATCAAAAGAAAAATAGGTTGCACATTGGTACATCCTCAATAGTTGTAAAGAAATAATGAGCTACTGCAAGTATAAATTTCAAACTTCATATTTCTCTCACTATTTAGTGGCAATGGAAGTAGACAATAATTTCTACGGTGTTTTAGATGAAGTGTTGGACTTTCAATATCTGCTGAGATGACGTGTTTGGTTATTCAGGTTTGACACAAGTAACAACAAAAGTCATAGGACACGCTTGGAGTTACAATACAAATCAATCAACACATCGCATTTTTTGTTTGTGGAGGAACCAACCATTCTTGCGATTCAGACACAACAAGATTTTTACCTTGAGTACCCAAAAAATGGTATCAGTTGGAAAGTTCTTCATGTGGTCCAAAATAAACATATATAAATGGAAGATGTTGAGAATGAACAGTTGGATGTACTGAAAATTGTTGTTGGACATTATATGAATGAACACAGTGAGGAGCACACTATGTGACGCTAAACCTACAGTGGTGGAAAGATCAATTGTTTGATATCTTGTTGACGACTTCATAAATGATGATGATGAAAAATTATCTCCTCAAAACTATGAGATACTAGAGAGATATTCATTAAATATGATTTAAATAAAATATTAACCGATTAATTAGTTGGTTTG

mRNA sequence

ATGCGATTGTACAATTTTTACAAATCACAAGTTGATGACTCTGTCTTTCGCAATGATTTGCGTGGTCAAGATGTTGTTTGTGAACAAGTAGAATCAAGTGATAATTTGAGACTATTGAGTTCGAGAGCTACAGTGGAAACTGACGCGTGTTGTAGAGTATTATCACGCTACAAGAGAAAAAGACAAGTACAAAATACTTTAGAATTGAGGAATGATGTTGATCGGTATTTATCTGACCCTTGTGAGGAGTTAAATGATCAGTTTGATGTTCTAACTTGGTGGAAATTGAATGGGGCTAAATACCGAATTCTATCAAAAATTGCTCTAGATAGTTTTGTCGTTCTGGTGTCTACTGCGGCTTCTAAATCTGCATTCAGTACTGGAGGAAGGATTTTGGATTCTTTTAGGAGTTCTTTATCACCTAAAACAGTGGAAGCTTTGATTTGTACACAAAACTGGATTTGTGGCAAAACAACCTTATTGGATCTTTGTCCATAG

Coding sequence (CDS)

ATGCGATTGTACAATTTTTACAAATCACAAGTTGATGACTCTGTCTTTCGCAATGATTTGCGTGGTCAAGATGTTGTTTGTGAACAAGTAGAATCAAGTGATAATTTGAGACTATTGAGTTCGAGAGCTACAGTGGAAACTGACGCGTGTTGTAGAGTATTATCACGCTACAAGAGAAAAAGACAAGTACAAAATACTTTAGAATTGAGGAATGATGTTGATCGGTATTTATCTGACCCTTGTGAGGAGTTAAATGATCAGTTTGATGTTCTAACTTGGTGGAAATTGAATGGGGCTAAATACCGAATTCTATCAAAAATTGCTCTAGATAGTTTTGTCGTTCTGGTGTCTACTGCGGCTTCTAAATCTGCATTCAGTACTGGAGGAAGGATTTTGGATTCTTTTAGGAGTTCTTTATCACCTAAAACAGTGGAAGCTTTGATTTGTACACAAAACTGGATTTGTGGCAAAACAACCTTATTGGATCTTTGTCCATAG

Protein sequence

MRLYNFYKSQVDDSVFRNDLRGQDVVCEQVESSDNLRLLSSRATVETDACCRVLSRYKRKRQVQNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLNGAKYRILSKIALDSFVVLVSTAASKSAFSTGGRILDSFRSSLSPKTVEALICTQNWICGKTTLLDLCP*

Homology

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BLAST of CsaV3_5G023190 vs. NCBI nr
Match: KAE8648396.1 (hypothetical protein Csa_008568 [Cucumis sativus])

HSP 1 Score: 331.6 bits (849), Expect = 3.8e-87
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0


Query: 1   MRLYNFYKSQVDDSVFRNDLRGQDVVCEQVESSDNLRLLSSRATVETDACCRVLSRYKRK 60
           MRLYNFYKSQVDDSVFRNDLRGQDVVCEQVESSDNLRLLSSRATVETDACCRVLSRYKRK
Sbjct: 1   MRLYNFYKSQVDDSVFRNDLRGQDVVCEQVESSDNLRLLSSRATVETDACCRVLSRYKRK 60

Query: 61  RQVQNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLNGAKYRILSKIALDSFVVLVSTAA 120
           RQVQNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLNGAKYRILSKIALDSFVVLVSTAA
Sbjct: 61  RQVQNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLNGAKYRILSKIALDSFVVLVSTAA 120

Query: 121 SKSAFSTGGRILDSFRSSLSPKTVEALICTQNWICGKTTLLDLCP 166
           SKSAFSTGGRILDSFRSSLSPKTVEALICTQNWICGKTTLLDLCP
Sbjct: 121 SKSAFSTGGRILDSFRSSLSPKTVEALICTQNWICGKTTLLDLCP 165

[Close]

BLAST of CsaV3_5G023190 vs. NCBI nr
Match: KAA0062374.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 276.2 bits (705), Expect = 1.9e-70
Identity = 139/165 (84.24%), Postives = 146/165 (88.48%), Query Frame = 0


Query: 1   MRLYNFYKSQVDDSVFRNDLRGQDVVCEQVESSDNLRLLSSRATVETDACCRVLSRYKRK 60
           M LYN YKSQ+D   FRNDL GQ VVCEQVESSD+L++LSS  T+ETDA CRVLSRYKR+
Sbjct: 167 MHLYNCYKSQIDGFAFRNDLSGQAVVCEQVESSDSLKVLSSGTTMETDASCRVLSRYKRR 226

Query: 61  RQVQNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLNGAKYRILSKIALDSFVVLVSTAA 120
           RQ QNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLN  KY ILSKIA D FVV VST A
Sbjct: 227 RQQQNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLNAVKYPILSKIAQDIFVVSVSTVA 286

Query: 121 SKSAFSTGGRILDSFRSSLSPKTVEALICTQNWICGKTTLLDLCP 166
           S+SAFSTGGRILDSFRSSLSPKTVEALICTQNWI GKTTLLDLCP
Sbjct: 287 SESAFSTGGRILDSFRSSLSPKTVEALICTQNWIRGKTTLLDLCP 331

[Close]

BLAST of CsaV3_5G023190 vs. NCBI nr
Match: TYK01905.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 275.4 bits (703), Expect = 3.2e-70
Identity = 138/165 (83.64%), Postives = 144/165 (87.27%), Query Frame = 0


Query: 1   MRLYNFYKSQVDDSVFRNDLRGQDVVCEQVESSDNLRLLSSRATVETDACCRVLSRYKRK 60
           MRLYN YKSQ+D   FRNDL GQ VVCEQVESSD+L++LS   T ETDA CRVLSRYKR+
Sbjct: 503 MRLYNCYKSQIDGFAFRNDLSGQAVVCEQVESSDSLKVLSPGTTTETDASCRVLSRYKRR 562

Query: 61  RQVQNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLNGAKYRILSKIALDSFVVLVSTAA 120
           RQ QNTLELRNDVD YLSDPC ELNDQFDVLTWWKLN  KY ILSKIA D FVVLVST A
Sbjct: 563 RQEQNTLELRNDVDWYLSDPCVELNDQFDVLTWWKLNAVKYPILSKIAQDIFVVLVSTVA 622

Query: 121 SKSAFSTGGRILDSFRSSLSPKTVEALICTQNWICGKTTLLDLCP 166
           S+S FSTGGRILDSFRSSLSPKTVEALICTQNWICGKTTLLDLCP
Sbjct: 623 SESTFSTGGRILDSFRSSLSPKTVEALICTQNWICGKTTLLDLCP 667

[Close]

BLAST of CsaV3_5G023190 vs. NCBI nr
Match: KAA0052351.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 275.4 bits (703), Expect = 3.2e-70
Identity = 138/165 (83.64%), Postives = 144/165 (87.27%), Query Frame = 0


Query: 1   MRLYNFYKSQVDDSVFRNDLRGQDVVCEQVESSDNLRLLSSRATVETDACCRVLSRYKRK 60
           MRLYN YKSQ+D   FRNDL GQ VVCEQVESSD+L++LS   T ETDA CRVLSRYKR+
Sbjct: 252 MRLYNCYKSQIDGFAFRNDLSGQAVVCEQVESSDSLKVLSPGTTTETDASCRVLSRYKRR 311

Query: 61  RQVQNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLNGAKYRILSKIALDSFVVLVSTAA 120
           RQ QNTLELRNDVD YLSDPC ELNDQFDVLTWWKLN  KY ILSKIA D FVVLVST A
Sbjct: 312 RQEQNTLELRNDVDWYLSDPCVELNDQFDVLTWWKLNAVKYPILSKIAQDIFVVLVSTVA 371

Query: 121 SKSAFSTGGRILDSFRSSLSPKTVEALICTQNWICGKTTLLDLCP 166
           S+S FSTGGRILDSFRSSLSPKTVEALICTQNWICGKTTLLDLCP
Sbjct: 372 SESTFSTGGRILDSFRSSLSPKTVEALICTQNWICGKTTLLDLCP 416

[Close]

BLAST of CsaV3_5G023190 vs. NCBI nr
Match: KAA0032948.1 (zinc finger BED domain-containing protein RICESLEEPER 2 [Cucumis melo var. makuwa])

HSP 1 Score: 274.6 bits (701), Expect = 5.5e-70
Identity = 138/165 (83.64%), Postives = 145/165 (87.88%), Query Frame = 0


Query: 1   MRLYNFYKSQVDDSVFRNDLRGQDVVCEQVESSDNLRLLSSRATVETDACCRVLSRYKRK 60
           MRLYN YKSQ+D   FRNDL GQ VVCEQVESSD+L++LSS  T+ETDA CRVLSRYKR+
Sbjct: 27  MRLYNCYKSQIDGFAFRNDLSGQVVVCEQVESSDSLKVLSSGTTMETDANCRVLSRYKRR 86

Query: 61  RQVQNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLNGAKYRILSKIALDSFVVLVSTAA 120
           RQ QNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLN  KY ILSKIA D F VLVST  
Sbjct: 87  RQEQNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLNAVKYPILSKIAQDIFAVLVSTVT 146

Query: 121 SKSAFSTGGRILDSFRSSLSPKTVEALICTQNWICGKTTLLDLCP 166
           S+SAFSTGGRILDSFRSSLSPKTVE LICTQNWI GKTTLLDLCP
Sbjct: 147 SESAFSTGGRILDSFRSSLSPKTVEVLICTQNWIRGKTTLLDLCP 191

[Close]

BLAST of CsaV3_5G023190 vs. ExPASy Swiss-Prot
Match: P08770 (Putative AC transposase OS=Zea mays OX=4577 PE=2 SV=2)

HSP 1 Score: 94.7 bits (234), Expect = 1.0e-18
Identity = 41/84 (48.81%), Postives = 64/84 (76.19%), Query Frame = 0


Query: 71  NDVDRYLSDPCEELNDQFDVLTWWKLNGAKYRILSKIALDSFVVLVSTAASKSAFSTGGR 130
           N++D+Y+S+P  + + QFD+L+WW+   A+Y IL++IA D   + VST AS+SAFS GGR
Sbjct: 668 NELDKYMSEPLLKHSGQFDILSWWRGRVAEYPILTQIARDVLAIQVSTVASESAFSAGGR 727

Query: 131 ILDSFRSSLSPKTVEALICTQNWI 155
           ++D +R+ L  + VEALICT++W+
Sbjct: 728 VVDPYRNRLGSEIVEALICTKDWV 751

[Close]

BLAST of CsaV3_5G023190 vs. ExPASy Swiss-Prot
Match: P03010 (Putative AC9 transposase OS=Zea mays OX=4577 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.0e-18
Identity = 41/84 (48.81%), Postives = 64/84 (76.19%), Query Frame = 0


Query: 71  NDVDRYLSDPCEELNDQFDVLTWWKLNGAKYRILSKIALDSFVVLVSTAASKSAFSTGGR 130
           N++D+Y+S+P  + + QFD+L+WW+   A+Y IL++IA D   + VST AS+SAFS GGR
Sbjct: 637 NELDKYMSEPLLKHSGQFDILSWWRGRVAEYPILTQIARDVLAIQVSTVASESAFSAGGR 696

Query: 131 ILDSFRSSLSPKTVEALICTQNWI 155
           ++D +R+ L  + VEALICT++W+
Sbjct: 697 VVDPYRNRLGSEIVEALICTKDWV 720

[Close]

BLAST of CsaV3_5G023190 vs. ExPASy Swiss-Prot
Match: Q9M2N5 (Zinc finger BED domain-containing protein DAYSLEEPER OS=Arabidopsis thaliana OX=3702 GN=HAT PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.9e-13
Identity = 37/86 (43.02%), Postives = 53/86 (61.63%), Query Frame = 0


Query: 69  LRNDVDRYLSDPCEELNDQFDVLTWWKLNGAKYRILSKIALDSFVVLVSTAASKSAFSTG 128
           L++++D+YL +       +FDVL WWK N  KY  LSK+A D   + VS AA    F   
Sbjct: 589 LKSELDQYLDETLLPRVQEFDVLDWWKQNKLKYPTLSKMARDILSIPVSAAAFDYVFDME 648

Query: 129 GRILDSFRSSLSPKTVEALICTQNWI 155
            R +D +++SL P+TVEALIC + W+
Sbjct: 649 PREMDEYKTSLRPETVEALICAREWL 674

[Close]

BLAST of CsaV3_5G023190 vs. ExPASy Swiss-Prot
Match: B9FJG3 (Zinc finger BED domain-containing protein RICESLEEPER 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0239150 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 8.4e-13
Identity = 37/96 (38.54%), Postives = 60/96 (62.50%), Query Frame = 0


Query: 62  QVQNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLNGAKYRILSKIALDSFVVLVSTAAS 121
           ++  +   ++++++YL +       +FD+L WWKLN  KY  LSK+A D   + +S  +S
Sbjct: 607 EIATSQPTKSELEQYLDESLTPRIQEFDILNWWKLNTLKYPTLSKMARDILAIPMSMVSS 666

Query: 122 -KSAFS--TGGRILDSFRSSLSPKTVEALICTQNWI 155
             S FS  TG R+LD +RSS  P+ VEAL+C ++W+
Sbjct: 667 GNSIFSAGTGTRMLDDYRSSSRPEIVEALVCAKDWL 702

[Close]

BLAST of CsaV3_5G023190 vs. ExPASy Swiss-Prot
Match: Q6AVI0 (Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0733400 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-12
Identity = 36/96 (37.50%), Postives = 61/96 (63.54%), Query Frame = 0


Query: 62  QVQNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLNGAKYRILSKIALDSFVVLVSTAAS 121
           ++  +   ++++++YL +       +FD+L WWKLN  K+  LS++A D   + +S  +S
Sbjct: 607 EIATSQPTKSELEQYLDESLTPRIQEFDILNWWKLNTLKFPTLSRMARDILAIPMSMVSS 666

Query: 122 -KSAFS--TGGRILDSFRSSLSPKTVEALICTQNWI 155
             S FS  TG R+LD +RSSL P+ VEAL+C ++W+
Sbjct: 667 GNSIFSAGTGTRMLDDYRSSLRPEIVEALVCAKDWL 702

[Close]

BLAST of CsaV3_5G023190 vs. ExPASy TrEMBL
Match: A0A5A7V549 (Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G001490 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 9.1e-71
Identity = 139/165 (84.24%), Postives = 146/165 (88.48%), Query Frame = 0


Query: 1   MRLYNFYKSQVDDSVFRNDLRGQDVVCEQVESSDNLRLLSSRATVETDACCRVLSRYKRK 60
           M LYN YKSQ+D   FRNDL GQ VVCEQVESSD+L++LSS  T+ETDA CRVLSRYKR+
Sbjct: 167 MHLYNCYKSQIDGFAFRNDLSGQAVVCEQVESSDSLKVLSSGTTMETDASCRVLSRYKRR 226

Query: 61  RQVQNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLNGAKYRILSKIALDSFVVLVSTAA 120
           RQ QNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLN  KY ILSKIA D FVV VST A
Sbjct: 227 RQQQNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLNAVKYPILSKIAQDIFVVSVSTVA 286

Query: 121 SKSAFSTGGRILDSFRSSLSPKTVEALICTQNWICGKTTLLDLCP 166
           S+SAFSTGGRILDSFRSSLSPKTVEALICTQNWI GKTTLLDLCP
Sbjct: 287 SESAFSTGGRILDSFRSSLSPKTVEALICTQNWIRGKTTLLDLCP 331

[Close]

BLAST of CsaV3_5G023190 vs. ExPASy TrEMBL
Match: A0A5D3BRU1 (Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G001720 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.6e-70
Identity = 138/165 (83.64%), Postives = 144/165 (87.27%), Query Frame = 0


Query: 1   MRLYNFYKSQVDDSVFRNDLRGQDVVCEQVESSDNLRLLSSRATVETDACCRVLSRYKRK 60
           MRLYN YKSQ+D   FRNDL GQ VVCEQVESSD+L++LS   T ETDA CRVLSRYKR+
Sbjct: 503 MRLYNCYKSQIDGFAFRNDLSGQAVVCEQVESSDSLKVLSPGTTTETDASCRVLSRYKRR 562

Query: 61  RQVQNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLNGAKYRILSKIALDSFVVLVSTAA 120
           RQ QNTLELRNDVD YLSDPC ELNDQFDVLTWWKLN  KY ILSKIA D FVVLVST A
Sbjct: 563 RQEQNTLELRNDVDWYLSDPCVELNDQFDVLTWWKLNAVKYPILSKIAQDIFVVLVSTVA 622

Query: 121 SKSAFSTGGRILDSFRSSLSPKTVEALICTQNWICGKTTLLDLCP 166
           S+S FSTGGRILDSFRSSLSPKTVEALICTQNWICGKTTLLDLCP
Sbjct: 623 SESTFSTGGRILDSFRSSLSPKTVEALICTQNWICGKTTLLDLCP 667

[Close]

BLAST of CsaV3_5G023190 vs. ExPASy TrEMBL
Match: A0A5A7UFQ0 (Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G001920 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.6e-70
Identity = 138/165 (83.64%), Postives = 144/165 (87.27%), Query Frame = 0


Query: 1   MRLYNFYKSQVDDSVFRNDLRGQDVVCEQVESSDNLRLLSSRATVETDACCRVLSRYKRK 60
           MRLYN YKSQ+D   FRNDL GQ VVCEQVESSD+L++LS   T ETDA CRVLSRYKR+
Sbjct: 252 MRLYNCYKSQIDGFAFRNDLSGQAVVCEQVESSDSLKVLSPGTTTETDASCRVLSRYKRR 311

Query: 61  RQVQNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLNGAKYRILSKIALDSFVVLVSTAA 120
           RQ QNTLELRNDVD YLSDPC ELNDQFDVLTWWKLN  KY ILSKIA D FVVLVST A
Sbjct: 312 RQEQNTLELRNDVDWYLSDPCVELNDQFDVLTWWKLNAVKYPILSKIAQDIFVVLVSTVA 371

Query: 121 SKSAFSTGGRILDSFRSSLSPKTVEALICTQNWICGKTTLLDLCP 166
           S+S FSTGGRILDSFRSSLSPKTVEALICTQNWICGKTTLLDLCP
Sbjct: 372 SESTFSTGGRILDSFRSSLSPKTVEALICTQNWICGKTTLLDLCP 416

[Close]

BLAST of CsaV3_5G023190 vs. ExPASy TrEMBL
Match: A0A5A7SQX7 (Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold269G00240 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.7e-70
Identity = 138/165 (83.64%), Postives = 145/165 (87.88%), Query Frame = 0


Query: 1   MRLYNFYKSQVDDSVFRNDLRGQDVVCEQVESSDNLRLLSSRATVETDACCRVLSRYKRK 60
           MRLYN YKSQ+D   FRNDL GQ VVCEQVESSD+L++LSS  T+ETDA CRVLSRYKR+
Sbjct: 27  MRLYNCYKSQIDGFAFRNDLSGQVVVCEQVESSDSLKVLSSGTTMETDANCRVLSRYKRR 86

Query: 61  RQVQNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLNGAKYRILSKIALDSFVVLVSTAA 120
           RQ QNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLN  KY ILSKIA D F VLVST  
Sbjct: 87  RQEQNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLNAVKYPILSKIAQDIFAVLVSTVT 146

Query: 121 SKSAFSTGGRILDSFRSSLSPKTVEALICTQNWICGKTTLLDLCP 166
           S+SAFSTGGRILDSFRSSLSPKTVE LICTQNWI GKTTLLDLCP
Sbjct: 147 SESAFSTGGRILDSFRSSLSPKTVEVLICTQNWIRGKTTLLDLCP 191

[Close]

BLAST of CsaV3_5G023190 vs. ExPASy TrEMBL
Match: A0A5A7UUF4 (Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold803G00040 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 3.5e-70
Identity = 137/165 (83.03%), Postives = 146/165 (88.48%), Query Frame = 0


Query: 1   MRLYNFYKSQVDDSVFRNDLRGQDVVCEQVESSDNLRLLSSRATVETDACCRVLSRYKRK 60
           MRLYN YK+Q+D   FRNDL GQ VVCEQVESSD+L++LSS  T+ETDA CRVLSRYKR+
Sbjct: 63  MRLYNCYKTQIDGFAFRNDLSGQAVVCEQVESSDSLKVLSSGTTMETDASCRVLSRYKRR 122

Query: 61  RQVQNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLNGAKYRILSKIALDSFVVLVSTAA 120
           RQ QNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLN  KY ILSKIA D F V VST A
Sbjct: 123 RQEQNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLNAVKYPILSKIAQDIFAVSVSTVA 182

Query: 121 SKSAFSTGGRILDSFRSSLSPKTVEALICTQNWICGKTTLLDLCP 166
           S+SAFSTGGRILDSFRSSLSPKTVEAL+CTQNWI GKTTLLDLCP
Sbjct: 183 SESAFSTGGRILDSFRSSLSPKTVEALMCTQNWIRGKTTLLDLCP 227

[Close]

BLAST of CsaV3_5G023190 vs. TAIR 10
Match: AT3G42170.1 (BED zinc finger ;hAT family dimerisation domain )

HSP 1 Score: 76.6 bits (187), Expect = 2.0e-14
Identity = 37/86 (43.02%), Postives = 53/86 (61.63%), Query Frame = 0


Query: 69  LRNDVDRYLSDPCEELNDQFDVLTWWKLNGAKYRILSKIALDSFVVLVSTAASKSAFSTG 128
           L++++D+YL +       +FDVL WWK N  KY  LSK+A D   + VS AA    F   
Sbjct: 589 LKSELDQYLDETLLPRVQEFDVLDWWKQNKLKYPTLSKMARDILSIPVSAAAFDYVFDME 648

Query: 129 GRILDSFRSSLSPKTVEALICTQNWI 155
            R +D +++SL P+TVEALIC + W+
Sbjct: 649 PREMDEYKTSLRPETVEALICAREWL 674

[Close]

BLAST of CsaV3_5G023190 vs. TAIR 10
Match: AT1G18560.1 (BED zinc finger ;hAT family dimerisation domain )

HSP 1 Score: 55.5 bits (132), Expect = 4.9e-08
Identity = 29/97 (29.90%), Postives = 54/97 (55.67%), Query Frame = 0


Query: 58  KRKRQVQNTLELRNDVDRYLSDPCEELNDQFDVLTWWKLNGAKYRILSKIALDSFVVLVS 117
           +RKR+   +  + +++ +YLS+    +  Q DVL WWK+N  +Y  LS +A D   V  +
Sbjct: 555 RRKRRGSMSNNVVDELTQYLSESIVPM--QTDVLDWWKVNSGRYPRLSNMARDFLAVQAT 614

Query: 118 TAASKSAFSTGGRILDSFRSSLSPKTVEALICTQNWI 155
           +AA +  F   G  +D  +  +   + +++IC ++WI
Sbjct: 615 SAAPEEIFCGKGEEIDKQKYCMPHDSTQSVICIRSWI 649

The following BLAST results are available for this feature:

BLAST of CsaV3_5G023190 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648396.1	3.8e-87	100.00	hypothetical protein Csa_008568 [Cucumis sativus]	[more]
KAA0062374.1	1.9e-70	84.24	zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ...	[more]
TYK01905.1	3.2e-70	83.64	zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ...	[more]
KAA0052351.1	3.2e-70	83.64	zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ...	[more]
KAA0032948.1	5.5e-70	83.64	zinc finger BED domain-containing protein RICESLEEPER 2 [Cucumis melo var. makuw...	[more]

BLAST of CsaV3_5G023190 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P08770	1.0e-18	48.81	Putative AC transposase OS=Zea mays OX=4577 PE=2 SV=2	[more]
P03010	1.0e-18	48.81	Putative AC9 transposase OS=Zea mays OX=4577 PE=4 SV=1	[more]
Q9M2N5	2.9e-13	43.02	Zinc finger BED domain-containing protein DAYSLEEPER OS=Arabidopsis thaliana OX=...	[more]
B9FJG3	8.4e-13	38.54	Zinc finger BED domain-containing protein RICESLEEPER 1 OS=Oryza sativa subsp. j...	[more]
Q6AVI0	1.1e-12	37.50	Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Oryza sativa subsp. j...	[more]

BLAST of CsaV3_5G023190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V549	9.1e-71	84.24	Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var...	[more]
A0A5D3BRU1	1.6e-70	83.64	Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var...	[more]
A0A5A7UFQ0	1.6e-70	83.64	Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var...	[more]
A0A5A7SQX7	2.7e-70	83.64	Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Cucumis melo var. mak...	[more]
A0A5A7UUF4	3.5e-70	83.03	Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var...	[more]

BLAST of CsaV3_5G023190 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G42170.1	2.0e-14	43.02	BED zinc finger ;hAT family dimerisation domain	[more]
AT1G18560.1	4.9e-08	29.90	BED zinc finger ;hAT family dimerisation domain	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008906	HAT, C-terminal dimerisation domain	PFAM	PF05699	Dimer_Tnp_hAT	coord: 73..154 e-value: 4.0E-25 score: 87.4
None	No IPR available	PANTHER	PTHR23272	BED FINGER-RELATED	coord: 62..156
None	No IPR available	PANTHER	PTHR23272:SF15	ZINC FINGER BED DOMAIN-CONTAINING PROTEIN DAYSLEEPER-LIKE ISOFORM X1	coord: 62..156
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 21..154

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G023190.1	CsaV3_5G023190.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046983	protein dimerization activity