CsaV3_5G021820 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G021820
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	coiled-coil domain-containing protein 1 isoform X3
Location	chr5: 16477424 .. 16479536 (-)
RNA-Seq Expression	CsaV3_5G021820
Synteny	CsaV3_5G021820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGTATTATTTAACAAAATTGCTAAAAAAAATCGACGAAAAAGAAAATGGATTCGAGAAAGAAGACGGGAAGAGGCAACGACGACGAACAGGAACAAATCGAGCAACTGTTACAAGCAGCTCAAGACGATCTGATGCTCAAATTGAGCCTCGATTCTCACATGTCTCGTGTTTCCCCTAACTATCTCGATTCCGATCTCGATCGCCGTTTCCAAGCCCTAAGATCTCGTCCTCCTCGCTCTTCTCACCCGCATATTCAGTCCGATTCCTCGTTCCAACCGCCGCCGCCGATTGAAAATCTCGTCGTCGATGGCGAATCTCAGTCGATTCTCGGCGACGATCTTGCTGCTAGATTCGCTGCTCTGAAGGCGTCTTTGCCTTCCTCGGCTGCTCCGCTTTCATCCTCGATACCTAATGATGCTGATAGCGAGGACGAAGAGGATGAGGTTGAGAAGCTGATTCAGTGGGCTAAGGATGCCGCTCGACTCGATCCTTCGCCTCCATCTGAGGAAGGCGATGAAGAAGAGGAGTTCACTAGTTCCGATGAAGATGTCGACGATCGGATAAAAGAGCGTCGGAAAAAGAAGGGCGGATGAGCGTTGATTGAAACTGCTATCTGTTTGTGCATTATTGGATTCACTGATTTTGTGGCATTTAGAAACTGGAGATTCGCAGATTGGATAGATACAATCCGGATTTTGGTTGAACTAGATCGTGATTCATGTTGAAGTACGTACTCTGTTCCTCACTCAATCAATTTAGCATTGTTTGATATTTGAGATAATCAAGATGGTTGAAAATAATCCAATTTTCTCTCACTTTTTTTTAGGAAAAAAAAAAACAAGTGATCTTAAATTTGATTTAACAAATTTAAAACTTTTATAAAATTGTTAAGAGTAAATCTTCCAAACCCTACAAAATTAAAGGAATTTGATAATATATATATGCTGTGAGAACAATTTTTTGAAGCCCTGTGCTCAACTCCAATGACGATTATTGTTGATGACATGCTTATGGTGACCAACTTGGACAATCATTTTGACCGTCAACTGCAAAACCAAATATAACCTAATGTCATTAACCATGACACCTACCTTTCAAACCCTACCTTTGATAACTAACTTTACCCAAATGTTTAAAGTACAAACTTTACCTCTTTCCCATACTTTGTCATCAATGATAACATTTTGGATATATAACTAACTAAGAGTCCGTTTAGTAATATTTCTGTTTTTCATTTTCTGTTTCTTTTCTAGAACAAAAAAGGAATATATTTGATACTTGTTTCTTGAAAAACAGAAACAGAAACTTGTATTTGATAACTGTTTTGCTTTCTTAATAATGTCCTACCTTATACATTCGATGAAATTTATATTTTTTCAAATTCTTTGTAATCCATTGGCTATGTTTTCTTGTCTGACCATAGTCCTCACCTCTTAATTCATCAATTTCAACAACCTCGTGACACAACGTTGTTCGGATTTTTTTTGTGATATCTAAAATGTAGTACTAAAATTAGAAAAGAAAGAAAATCAATAAACTAGATAGTAGAAAGAGGCATAGATAATTCACCATTCAAGGTTGTTTTGTTTTACAAACGAGGATAGTCATTTCCCTGTACTTGTTCTTTACTTCGATGAGTACTGACAACTTATCTAAATTCCTTGCTTATCGGTCCCATTGCATCTACATATACATAAAACTTACAGCTCAATATATACAAATATGAAATAACTAAGATATTGAGCTTGGAACAACATAATCTAAGTAGCTTAAATTTAAGGATCTTATGTACACAGGCAATGGGCTTCAACTCCTTTTTGGTTCAACTGCTTCTCTTGAGCAACGATTTGTTTCAGATGGTTGATCTTCTTCAACCACATGGACTTCCTCTACATTAGAAAACATGACTTCAGAGTAAGACACGTGCCTATGGTTTCTTCATATTCTCCAGTCTACAGAAGTGATTTAAAACAAATATTTGTATGAAAGTTTGAAAGAAATGCCAGTTTTTCACAAAATATAGACTACAACAGCCTTGAATCAAACCAAAAGATAAGAAGGTAAGAGCAAGATCATGTATCATGTATCATGTATCATGTATCATGTATCAT

mRNA sequence

ATGGATTCGAGAAAGAAGACGGGAAGAGGCAACGACGACGAACAGGAACAAATCGAGCAACTGTTACAAGCAGCTCAAGACGATCTGATGCTCAAATTGAGCCTCGATTCTCACATGTCTCGTGTTTCCCCTAACTATCTCGATTCCGATCTCGATCGCCGTTTCCAAGCCCTAAGATCTCGTCCTCCTCGCTCTTCTCACCCGCATATTCAGTCCGATTCCTCGTTCCAACCGCCGCCGCCGATTGAAAATCTCGTCGTCGATGGCGAATCTCAGTCGATTCTCGGCGACGATCTTGCTGCTAGATTCGCTGCTCTGAAGGCGTCTTTGCCTTCCTCGGCTGCTCCGCTTTCATCCTCGATACCTAATGATGCTGATAGCGAGGACGAAGAGGATGAGGTTGAGAAGCTGATTCAGTGGGCTAAGGATGCCGCTCGACTCGATCCTTCGCCTCCATCTGAGGAAGGCGATGAAGAAGAGGAGTTCACTAGTTCCGATGAAGATGTCGACGATCGGATAAAAGAGCGTCGGAAAAAGAAGGGCGGATGA

Coding sequence (CDS)

ATGGATTCGAGAAAGAAGACGGGAAGAGGCAACGACGACGAACAGGAACAAATCGAGCAACTGTTACAAGCAGCTCAAGACGATCTGATGCTCAAATTGAGCCTCGATTCTCACATGTCTCGTGTTTCCCCTAACTATCTCGATTCCGATCTCGATCGCCGTTTCCAAGCCCTAAGATCTCGTCCTCCTCGCTCTTCTCACCCGCATATTCAGTCCGATTCCTCGTTCCAACCGCCGCCGCCGATTGAAAATCTCGTCGTCGATGGCGAATCTCAGTCGATTCTCGGCGACGATCTTGCTGCTAGATTCGCTGCTCTGAAGGCGTCTTTGCCTTCCTCGGCTGCTCCGCTTTCATCCTCGATACCTAATGATGCTGATAGCGAGGACGAAGAGGATGAGGTTGAGAAGCTGATTCAGTGGGCTAAGGATGCCGCTCGACTCGATCCTTCGCCTCCATCTGAGGAAGGCGATGAAGAAGAGGAGTTCACTAGTTCCGATGAAGATGTCGACGATCGGATAAAAGAGCGTCGGAAAAAGAAGGGCGGATGA

Protein sequence

MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRPPRSSHPHIQSDSSFQPPPPIENLVVDGESQSILGDDLAARFAALKASLPSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVDDRIKERRKKKGG*

Homology

[Close]

BLAST of CsaV3_5G021820 vs. NCBI nr
Match: XP_004150191.1 (uncharacterized protein LOC101219995 [Cucumis sativus] >XP_031740924.1 uncharacterized protein LOC116403668 [Cucumis sativus] >XP_031745568.1 uncharacterized protein LOC116405999 [Cucumis sativus] >KAE8648374.1 hypothetical protein Csa_023320 [Cucumis sativus])

HSP 1 Score: 340.9 bits (873), Expect = 6.9e-90
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRS 60
           MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRS
Sbjct: 1   MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRS 60

Query: 61  RPPRSSHPHIQSDSSFQPPPPIENLVVDGESQSILGDDLAARFAALKASLPSSAAPLSSS 120
           RPPRSSHPHIQSDSSFQPPPPIENLVVDGESQSILGDDLAARFAALKASLPSSAAPLSSS
Sbjct: 61  RPPRSSHPHIQSDSSFQPPPPIENLVVDGESQSILGDDLAARFAALKASLPSSAAPLSSS 120

Query: 121 IPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVDDRIKERRKKK 180
           IPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVDDRIKERRKKK
Sbjct: 121 IPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVDDRIKERRKKK 180

Query: 181 GG 183
           GG
Sbjct: 181 GG 182

[Close]

BLAST of CsaV3_5G021820 vs. NCBI nr
Match: TYK15177.1 (transcription initiation factor TFIID subunit 11 isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 305.4 bits (781), Expect = 3.2e-79
Identity = 169/192 (88.02%), Postives = 172/192 (89.58%), Query Frame = 0


Query: 1   MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRS 60
           MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKL+LDSHMSRVSPNYL SDLDRRFQALRS
Sbjct: 1   MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLTLDSHMSRVSPNYLHSDLDRRFQALRS 60

Query: 61  RP----------PRSSHPHIQSDSSFQPPPPIENLVVDGESQSILGDDLAARFAALKASL 120
           RP          PRSSHPHIQSDSS +PPPPIENLVVDGESQSILGDDLAARFAALKASL
Sbjct: 61  RPSSTAAAVPRNPRSSHPHIQSDSSSRPPPPIENLVVDGESQSILGDDLAARFAALKASL 120

Query: 121 PSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVD 180
           PSS  P SSSIPND DS DEEDEVEKLIQWAKDAARLDPSPPSEE DEEEEF SSDEDV+
Sbjct: 121 PSSTTPPSSSIPNDVDSADEEDEVEKLIQWAKDAARLDPSPPSEEDDEEEEFISSDEDVN 180

Query: 181 DRIKERRKKKGG 183
           DRIKERRKKK G
Sbjct: 181 DRIKERRKKKAG 192

[Close]

BLAST of CsaV3_5G021820 vs. NCBI nr
Match: XP_016903615.1 (PREDICTED: uncharacterized protein LOC103502866 [Cucumis melo])

HSP 1 Score: 302.8 bits (774), Expect = 2.1e-78
Identity = 167/192 (86.98%), Postives = 172/192 (89.58%), Query Frame = 0


Query: 1   MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRS 60
           MDSRKKTGRGNDDEQEQIEQLLQAAQDDL+LKL+LDSHMSRVSPNYL SDLDRRFQALRS
Sbjct: 1   MDSRKKTGRGNDDEQEQIEQLLQAAQDDLILKLTLDSHMSRVSPNYLHSDLDRRFQALRS 60

Query: 61  RP----------PRSSHPHIQSDSSFQPPPPIENLVVDGESQSILGDDLAARFAALKASL 120
           RP          PRSSHPHIQSDSS +PPPPIENLVVDGESQSILGDDLAARFAALKASL
Sbjct: 61  RPSSTAAAVPRNPRSSHPHIQSDSSSRPPPPIENLVVDGESQSILGDDLAARFAALKASL 120

Query: 121 PSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVD 180
           PSS  P SSSIPND DS DEEDEVEKLIQWAKDAARLDPSPPSEE DEEEEF SSDEDV+
Sbjct: 121 PSSTTPPSSSIPNDVDSADEEDEVEKLIQWAKDAARLDPSPPSEEDDEEEEFISSDEDVN 180

Query: 181 DRIKERRKKKGG 183
           DR+KERRKKK G
Sbjct: 181 DRMKERRKKKAG 192

[Close]

BLAST of CsaV3_5G021820 vs. NCBI nr
Match: KAA0066134.1 (transcription initiation factor TFIID subunit 11 isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 302.8 bits (774), Expect = 2.1e-78
Identity = 168/192 (87.50%), Postives = 171/192 (89.06%), Query Frame = 0


Query: 1   MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRS 60
           MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKL+LDSHMSRVSPNYL SDLDRRFQALRS
Sbjct: 1   MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLTLDSHMSRVSPNYLHSDLDRRFQALRS 60

Query: 61  RP----------PRSSHPHIQSDSSFQPPPPIENLVVDGESQSILGDDLAARFAALKASL 120
           RP          PRSSHPHIQSDSS +PPPPIENLVVDGESQSIL DDLAARFAALKASL
Sbjct: 61  RPSSTAAAVPRNPRSSHPHIQSDSSSRPPPPIENLVVDGESQSILDDDLAARFAALKASL 120

Query: 121 PSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVD 180
           PSS  P SSSIPND DS DEEDEVEKLIQWAKDAARLDPSPPSEE DEEEEF SSDEDV+
Sbjct: 121 PSSTTPPSSSIPNDVDSADEEDEVEKLIQWAKDAARLDPSPPSEEDDEEEEFISSDEDVN 180

Query: 181 DRIKERRKKKGG 183
           DRIKERRKKK G
Sbjct: 181 DRIKERRKKKAG 192

[Close]

BLAST of CsaV3_5G021820 vs. NCBI nr
Match: KAG7016610.1 (hypothetical protein SDJN02_21720, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 258.5 bits (659), Expect = 4.5e-65
Identity = 151/192 (78.65%), Postives = 159/192 (82.81%), Query Frame = 0


Query: 5   KKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRP-- 64
           +K G GN+D  EQ+EQLLQAAQDDLMLKLS+DSHMSRVSPNYLDSDLDRRFQALRSRP  
Sbjct: 18  RKMGSGNED--EQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSS 77

Query: 65  --------PRSSHPHIQSDSSFQPPPPIENLVVDGESQSILGDDLAARFAALKASLPSSA 124
                   PR S PH QSDSS + PPPIENLVVDGESQSILGDDLAARFAALKASLPSS 
Sbjct: 78  SAAAASRNPRPSQPHHQSDSSSR-PPPIENLVVDGESQSILGDDLAARFAALKASLPSSI 137

Query: 125 APLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDE------EEEFTSSDED 181
            P  SSIPND DS+DEEDEVEKLIQWAKDAARLDPSPPSEE DE      +EEF SSDED
Sbjct: 138 TPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDEDDEDDDDEEFNSSDED 197

[Close]

BLAST of CsaV3_5G021820 vs. ExPASy TrEMBL
Match: A0A5D3CTC3 (Transcription initiation factor TFIID subunit 11 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G00450 PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 1.5e-79
Identity = 169/192 (88.02%), Postives = 172/192 (89.58%), Query Frame = 0


Query: 1   MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRS 60
           MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKL+LDSHMSRVSPNYL SDLDRRFQALRS
Sbjct: 1   MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLTLDSHMSRVSPNYLHSDLDRRFQALRS 60

Query: 61  RP----------PRSSHPHIQSDSSFQPPPPIENLVVDGESQSILGDDLAARFAALKASL 120
           RP          PRSSHPHIQSDSS +PPPPIENLVVDGESQSILGDDLAARFAALKASL
Sbjct: 61  RPSSTAAAVPRNPRSSHPHIQSDSSSRPPPPIENLVVDGESQSILGDDLAARFAALKASL 120

Query: 121 PSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVD 180
           PSS  P SSSIPND DS DEEDEVEKLIQWAKDAARLDPSPPSEE DEEEEF SSDEDV+
Sbjct: 121 PSSTTPPSSSIPNDVDSADEEDEVEKLIQWAKDAARLDPSPPSEEDDEEEEFISSDEDVN 180

Query: 181 DRIKERRKKKGG 183
           DRIKERRKKK G
Sbjct: 181 DRIKERRKKKAG 192

[Close]

BLAST of CsaV3_5G021820 vs. ExPASy TrEMBL
Match: A0A5A7VFP6 (Transcription initiation factor TFIID subunit 11 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G001330 PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 1.0e-78
Identity = 168/192 (87.50%), Postives = 171/192 (89.06%), Query Frame = 0


Query: 1   MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRS 60
           MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKL+LDSHMSRVSPNYL SDLDRRFQALRS
Sbjct: 1   MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLTLDSHMSRVSPNYLHSDLDRRFQALRS 60

Query: 61  RP----------PRSSHPHIQSDSSFQPPPPIENLVVDGESQSILGDDLAARFAALKASL 120
           RP          PRSSHPHIQSDSS +PPPPIENLVVDGESQSIL DDLAARFAALKASL
Sbjct: 61  RPSSTAAAVPRNPRSSHPHIQSDSSSRPPPPIENLVVDGESQSILDDDLAARFAALKASL 120

Query: 121 PSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVD 180
           PSS  P SSSIPND DS DEEDEVEKLIQWAKDAARLDPSPPSEE DEEEEF SSDEDV+
Sbjct: 121 PSSTTPPSSSIPNDVDSADEEDEVEKLIQWAKDAARLDPSPPSEEDDEEEEFISSDEDVN 180

Query: 181 DRIKERRKKKGG 183
           DRIKERRKKK G
Sbjct: 181 DRIKERRKKKAG 192

[Close]

BLAST of CsaV3_5G021820 vs. ExPASy TrEMBL
Match: A0A1S4E6L5 (uncharacterized protein LOC103502866 OS=Cucumis melo OX=3656 GN=LOC103502866 PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 1.0e-78
Identity = 167/192 (86.98%), Postives = 172/192 (89.58%), Query Frame = 0


Query: 1   MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRS 60
           MDSRKKTGRGNDDEQEQIEQLLQAAQDDL+LKL+LDSHMSRVSPNYL SDLDRRFQALRS
Sbjct: 1   MDSRKKTGRGNDDEQEQIEQLLQAAQDDLILKLTLDSHMSRVSPNYLHSDLDRRFQALRS 60

Query: 61  RP----------PRSSHPHIQSDSSFQPPPPIENLVVDGESQSILGDDLAARFAALKASL 120
           RP          PRSSHPHIQSDSS +PPPPIENLVVDGESQSILGDDLAARFAALKASL
Sbjct: 61  RPSSTAAAVPRNPRSSHPHIQSDSSSRPPPPIENLVVDGESQSILGDDLAARFAALKASL 120

Query: 121 PSSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVD 180
           PSS  P SSSIPND DS DEEDEVEKLIQWAKDAARLDPSPPSEE DEEEEF SSDEDV+
Sbjct: 121 PSSTTPPSSSIPNDVDSADEEDEVEKLIQWAKDAARLDPSPPSEEDDEEEEFISSDEDVN 180

Query: 181 DRIKERRKKKGG 183
           DR+KERRKKK G
Sbjct: 181 DRMKERRKKKAG 192

[Close]

BLAST of CsaV3_5G021820 vs. ExPASy TrEMBL
Match: A0A6J1JTW4 (glucosidase 2 subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111489706 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 2.2e-65
Identity = 150/190 (78.95%), Postives = 159/190 (83.68%), Query Frame = 0


Query: 5   KKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRP-- 64
           +K G GN+D  EQ+EQLLQAAQDDLMLKLS+DSHMSRVSPNYLDSDLDRRFQALRSRP  
Sbjct: 19  RKMGSGNED--EQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRSRPSS 78

Query: 65  ------PRSSHPHIQSDSSFQPPPPIENLVVDGESQSILGDDLAARFAALKASLPSSAAP 124
                 PR+S PH QSDSS + PPPIENLVVDGESQSILGDDLAARFAALKASLPSS  P
Sbjct: 79  AAACRNPRTSQPHHQSDSSSR-PPPIENLVVDGESQSILGDDLAARFAALKASLPSSITP 138

Query: 125 LSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDE------EEEFTSSDEDVD 181
             SSIPND DS+DEEDEVEKLIQWAKDA RLDPSPPSEE DE      +EEF SSDED+D
Sbjct: 139 PPSSIPNDVDSDDEEDEVEKLIQWAKDAVRLDPSPPSEEDDEDDEDDDDEEFNSSDEDID 198

[Close]

BLAST of CsaV3_5G021820 vs. ExPASy TrEMBL
Match: A0A6J1FGM0 (nucleolin OS=Cucurbita moschata OX=3662 GN=LOC111445226 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 4.8e-65
Identity = 153/192 (79.69%), Postives = 160/192 (83.33%), Query Frame = 0


Query: 1   MDSRKKTGRGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRS 60
           MD RK    GN+D  EQ+EQLLQAAQDDLMLKLS+DSHMSRVSPNYLDSDLDRRFQALRS
Sbjct: 16  MDFRKMES-GNED--EQVEQLLQAAQDDLMLKLSVDSHMSRVSPNYLDSDLDRRFQALRS 75

Query: 61  RP---------PRSSHPHIQSDSSFQPPPPIENLVVDGESQSILGDDLAARFAALKASLP 120
           RP         PR S PH QSDSS + PPPIENLVVDGESQSILGDDLAARFAALKASLP
Sbjct: 76  RPSSAAAASRNPRPSQPHHQSDSSSR-PPPIENLVVDGESQSILGDDLAARFAALKASLP 135

Query: 121 SSAAPLSSSIPNDADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDE---EEEFTSSDED 180
           SS  P  SSIPND DS+DEEDEVEKLIQWAKDAARLDPSPPSEE DE   +EEF SSDED
Sbjct: 136 SSITPPPSSIPNDVDSDDEEDEVEKLIQWAKDAARLDPSPPSEEDDEDDDDEEFNSSDED 195

[Close]

BLAST of CsaV3_5G021820 vs. TAIR 10
Match: AT4G24370.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 105.1 bits (261), Expect = 5.9e-23
Identity = 75/166 (45.18%), Postives = 101/166 (60.84%), Query Frame = 0


Query: 9   RGNDDEQEQIEQLLQAAQDDLMLKLSLDSHMSRVSPNYLDSDLDRRFQALRSRPPRSSHP 68
           R    E++++EQLLQAAQD+++LKLS+DSH SR S +YLD DL  RF AL+S+  +    
Sbjct: 2   RRGGKEEDEVEQLLQAAQDEMILKLSVDSHTSRSSSDYLDPDLHSRFLALKSQKKKDQQQ 61

Query: 69  HIQSDSSFQPPPPIENLVVDGESQSILGDDLAARFAALKASLP----SSAAPLSSSIPND 128
             +     QP    +++V +        +DL  RFAALK SLP    SS+  L   I  D
Sbjct: 62  QQKQRPRMQPKS--KDVVEE------TPEDLMLRFAALKTSLPSASSSSSVLLQDEIGED 121

Query: 129 ADSEDEEDEVEKLIQWAKDAARLDPSPPSEEGDEEEEFTSSDEDVD 171
            D   E+ EV+KLIQWA DAARLDPSP S+  DE+ +   SD++ D
Sbjct: 122 GDEIGEDAEVDKLIQWAIDAARLDPSPSSD--DEQSQNCDSDDEND 157

The following BLAST results are available for this feature:

BLAST of CsaV3_5G021820 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150191.1	6.9e-90	100.00	uncharacterized protein LOC101219995 [Cucumis sativus] >XP_031740924.1 uncharact...	[more]
TYK15177.1	3.2e-79	88.02	transcription initiation factor TFIID subunit 11 isoform X3 [Cucumis melo var. m...	[more]
XP_016903615.1	2.1e-78	86.98	PREDICTED: uncharacterized protein LOC103502866 [Cucumis melo]	[more]
KAA0066134.1	2.1e-78	87.50	transcription initiation factor TFIID subunit 11 isoform X3 [Cucumis melo var. m...	[more]
KAG7016610.1	4.5e-65	78.65	hypothetical protein SDJN02_21720, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CsaV3_5G021820 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G021820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CTC3	1.5e-79	88.02	Transcription initiation factor TFIID subunit 11 isoform X3 OS=Cucumis melo var....	[more]
A0A5A7VFP6	1.0e-78	87.50	Transcription initiation factor TFIID subunit 11 isoform X3 OS=Cucumis melo var....	[more]
A0A1S4E6L5	1.0e-78	86.98	uncharacterized protein LOC103502866 OS=Cucumis melo OX=3656 GN=LOC103502866 PE=...	[more]
A0A6J1JTW4	2.2e-65	78.95	glucosidase 2 subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111489706 PE=4 SV=1	[more]
A0A6J1FGM0	4.8e-65	79.69	nucleolin OS=Cucurbita moschata OX=3662 GN=LOC111445226 PE=4 SV=1	[more]

BLAST of CsaV3_5G021820 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24370.1	5.9e-23	45.18	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 135..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..182
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 167..182

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G021820.1	CsaV3_5G021820.1	mRNA