CsaV3_5G020540 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G020540
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionProtein ENHANCED DOWNY MILDEW 2
Locationchr5: 15435257 .. 15437597 (-)
RNA-Seq ExpressionCsaV3_5G020540
SyntenyCsaV3_5G020540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATACACATGACCTTCCTATTTTCTAGCGAATGTGGGACACTGCTGACATTTTTGGTAGTGGTGATAATAACCTTAAACTAGTTTGAAACACCAAGCTGTGTTTTGGTATTATGATAACAATGAATGAGTAATCACTCGCAAGAACTCTATCAGTTAGTTTGGTAGAGAAACCTTAAGATGTATGATATTCAAGTTAAAATTGATTGTCTTGTGGGGTTTAGAGGCCGAGATCCTTGTAATGATATGATCACCTTTTTTAGCAACAATGTTTTGAATGATGTTACTGTCAGTTGTTTTGTTGGGAAACTGTAATTCTTGTTGGACTTTGGAGAGAGTTGTGATGTTTATGCTACAATAGCAAATTCATGTCAATTAAATATATAAGGACTCAAAATGCAAGGACATTACAAAAATGAAGAAAAGGTGAAAGACAATACTAGGAAGCTTCATATAGGTTAGATGTCTTAATTCCAGAATCTTTTTAAACCATCTTCTCACAACCTAGATGGAGTTTCTTGTAAAATTCTTTGTTATGGTGAATAATATAGTGTTATATTTACCTTCACCCATCAATTTAAGCTTTTGTGTCAATTGGTGATTTAAGATGGTATAAGAGTAAGGAGTCCATGAAGGTCTTGTTTTCAAACCTCTACAATGTATTTCTTCTCCCAATTAAAATTGGTTTTCACTTGTTGGGTTTTCTATATTTCAAGCTCCCAAGTGAGGGGAGTGTTGAATAATATAATATTAAGTTTTTCTTCACCAATCAACTTAAGCTTTTGGGTTAATTGGTGATTTAAGAGTAATTGAAGGGGTTCCTCTGCCGCTCTGTGATTCTTTGAAGCTTTAAAGAGTCTGGTGGATGAATCTTGCAACCTTGATGGGTCAATAAGCTTCTGTCACCAGCTTGTATTGTAGTGTGGCTGATGGGTTGGTGGATGAGAAAAGGTGAGGTAATTAAAATTGAACTAGTGAAAGCATGTGATATAGGGTTCACTTGGATTTCATTAGATCTGTTCTTAGAGGGAGAAAGACTTTAGGTTGGCTTGTAGTAGCTGGGCAAACAGCGGAATTTGGATGCCAACTTTTGCTATTTTCCTATATGGTTTCCTCATGAGAGAATAAAAGCTTCATGGGTACTGTTCAAATAGATCTTTCCTCAATTTCCATTGTTCATTGTGTTTGTTTTTAATGCTTTGAGTTCATTCTCGATCTAGAATATTGTTTTCTTAGCTGTAGTTGGGAAATGATGCTGTACTCTTTGCTGAAGTTAAAGTGGGCAAACTCCTAAATTCTTCTCATTATTAACTCTTTTAGATTGCAAATGAACTTACATACTTCAGTTTGTTGGTCCCATATTTGCTCTTTTGTGTATGTTGGTATTCCATGCTTTTGTCCGGTTGGCCTAAGATTAAATTTTAAAGCAATGAATTCAGTGAAGTTTTTTTTCTCAACTTTTTTTTTTTGTAAATGAATTGAACTGCGAAGATAGTCAGTCACCTCGTGAATTCCTTTATGGTTTCCATCCCCCTTAGAAGATGTGATTTCGATTAGGAGACTGAAAGAAAAGAAACTTGGTTAATGACTCTGGTGCTTCCCCAATTAGATCAATTCTCTTTGGTACTGGACTACTATCATAAAGTATGGCAAAGACCCTCTTTGTTGGAGTACTTGTACTTGAAAAGCTAGAAGAAGCAGAAAACCATGTTTCCATTCACACTATCAAGTGCCAGCCGTTTCCTTCTCTAATTTTAAGGTCCGTACAGATAGAGTTCCCTTAGTTATCCAGAAAAACCTTGGATTGACAGTGATTCACTAACGTCTGTGCTTCCCATAGACACGTAATTCTAAGTCAAAAAGGTACCGGTTCATGACTGCTGGAATGGATGTGTAAGGAACCCTCATTATATGGAGCTTACAAAGGTTCCTCATTATATGCAGCTTGGAAATATGTGCCTCCACAATACAACCAGCTTCAGATAATATCAGGTCTGTCTCTCCTTGCCCCGCTTTTGACCATTTTAATCACTCAAGCTTCACTGATCCTAACACTAAAGTCACTTTAGTATGAGGAACTCCATGCCATTCAGTTGAGTCAATGCAGAAGCTATCAAATACTGAAATTATCTCTCCTTATAGTGTCAGCAGTGAAGACTCTCCGGGTTTAACTCACATTCAAGATGATAATGCAAATGTTGAAATTGAAGCAATGGATCTAATTTTCCTTTTCGAAGTGGAAGGTGGTGTTTTTAGTAATTCCCTTTCTCTTCCCCAATCAAATCAGTGGAAATTCCAAAGGAATTGTTGCCAATTATTAGACTGTGATGTGATGCTGGTTTAA

mRNA sequence

ATGTATGATATTCAAGTTAAAATTGATTGTCTTGTGGGGTTTAGAGGCCGAGATCCTTGTAATGATATGATCACCTTTTTTAGCAACAATGTTTTGAATGATGTTACTGAACCCTCATTATATGGAGCTTACAAAGGTTCCTCATTATATGCAGCTTGGAAATATGTGCCTCCACAATACAACCAGCTTCAGATAATATCAGTTGAGTCAATGCAGAAGCTATCAAATACTGAAATTATCTCTCCTTATAGTGTCAGCAGTGAAGACTCTCCGGGTTTAACTCACATTCAAGATGATAATGCAAATGTTGAAATTGAAGCAATGGATCTAATTTTCCTTTTCGAAGTGGAAGGTGGTGTTTTTAGTAATTCCCTTTCTCTTCCCCAATCAAATCAGTGGAAATTCCAAAGGAATTGTTGCCAATTATTAGACTGTGATGTGATGCTGGTTTAA

Coding sequence (CDS)

ATGTATGATATTCAAGTTAAAATTGATTGTCTTGTGGGGTTTAGAGGCCGAGATCCTTGTAATGATATGATCACCTTTTTTAGCAACAATGTTTTGAATGATGTTACTGAACCCTCATTATATGGAGCTTACAAAGGTTCCTCATTATATGCAGCTTGGAAATATGTGCCTCCACAATACAACCAGCTTCAGATAATATCAGTTGAGTCAATGCAGAAGCTATCAAATACTGAAATTATCTCTCCTTATAGTGTCAGCAGTGAAGACTCTCCGGGTTTAACTCACATTCAAGATGATAATGCAAATGTTGAAATTGAAGCAATGGATCTAATTTTCCTTTTCGAAGTGGAAGGTGGTGTTTTTAGTAATTCCCTTTCTCTTCCCCAATCAAATCAGTGGAAATTCCAAAGGAATTGTTGCCAATTATTAGACTGTGATGTGATGCTGGTTTAA

Protein sequence

MYDIQVKIDCLVGFRGRDPCNDMITFFSNNVLNDVTEPSLYGAYKGSSLYAAWKYVPPQYNQLQIISVESMQKLSNTEIISPYSVSSEDSPGLTHIQDDNANVEIEAMDLIFLFEVEGGVFSNSLSLPQSNQWKFQRNCCQLLDCDVMLV*
Homology
[Close]
BLAST of CsaV3_5G020540 vs. NCBI nr
Match: KAE8648358.1 (hypothetical protein Csa_023117 [Cucumis sativus])

HSP 1 Score: 310.5 bits (794), Expect = 8.2e-81
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0 

Query: 1   MYDIQVKIDCLVGFRGRDPCNDMITFFSNNVLNDVTEPSLYGAYKGSSLYAAWKYVPPQY 60
           MYDIQVKIDCLVGFRGRDPCNDMITFFSNNVLNDVTEPSLYGAYKGSSLYAAWKYVPPQY
Sbjct: 1   MYDIQVKIDCLVGFRGRDPCNDMITFFSNNVLNDVTEPSLYGAYKGSSLYAAWKYVPPQY 60

Query: 61  NQLQIISVESMQKLSNTEIISPYSVSSEDSPGLTHIQDDNANVEIEAMDLIFLFEVEGGV 120
           NQLQIISVESMQKLSNTEIISPYSVSSEDSPGLTHIQDDNANVEIEAMDLIFLFEVEGGV
Sbjct: 61  NQLQIISVESMQKLSNTEIISPYSVSSEDSPGLTHIQDDNANVEIEAMDLIFLFEVEGGV 120

Query: 121 FSNSLSLPQSNQWKFQRNCCQLLDCDVMLV 151
           FSNSLSLPQSNQWKFQRNCCQLLDCDVMLV
Sbjct: 121 FSNSLSLPQSNQWKFQRNCCQLLDCDVMLV 150

[Close]
BLAST of CsaV3_5G020540 vs. NCBI nr
Match: KAE8650473.1 (hypothetical protein Csa_011613, partial [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 1.6e-20
Identity = 67/124 (54.03%), Postives = 83/124 (66.94%), Query Frame = 0 

Query: 31  VLNDVTEPSLYGAYKGSSLYAAWKYVPPQYNQLQIISVESMQKLSNTEIISPYSVSSEDS 90
           +  D +  + + A   S   AA  +   + +  + + +ES+QKLSNTEIISPYSVSSEDS
Sbjct: 99  IRKDTSFDNAWTALLKSEAIAACSFKDLEKDLKKNLPIESVQKLSNTEIISPYSVSSEDS 158

Query: 91  PGLTHIQDDNANVEIEAMDLIFLFEVEGGVFSNSLSLPQSNQWKFQRNCCQLL----DCD 150
           PGLTHIQDDNAN EIEA+DLIFLF+VEGGVFSN    P S+  K      +LL    DC+
Sbjct: 159 PGLTHIQDDNANDEIEAVDLIFLFKVEGGVFSN---FPCSSPIKSVEIPKELLPIIKDCE 218

[Close]
BLAST of CsaV3_5G020540 vs. NCBI nr
Match: KAE8648438.1 (hypothetical protein Csa_008077, partial [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 2.3e-19
Identity = 62/105 (59.05%), Postives = 68/105 (64.76%), Query Frame = 0 

Query: 52  AWKYVPPQYNQLQII---------------------------------SVESMQKLSNTE 111
           +WK+VPP+YNQ QII                                 SVES+QKLSNTE
Sbjct: 2   SWKFVPPKYNQFQIISGLSPRPASARFNYSSVTDPNTKVTLLQGSPCHSVESVQKLSNTE 61

Query: 112 IISPYSVSSEDSPGLTHIQDDNANVEIEAMDLIFLFEVEGGVFSN 124
           IISPYSVSSEDS GLT+IQDDNANVEIEA+DLI LFEVE GVFSN
Sbjct: 62  IISPYSVSSEDSLGLTYIQDDNANVEIEAVDLISLFEVEDGVFSN 106

[Close]
BLAST of CsaV3_5G020540 vs. NCBI nr
Match: TYK08108.1 (protein ENHANCED DOWNY MILDEW 2 [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-09
Identity = 40/53 (75.47%), Postives = 43/53 (81.13%), Query Frame = 0 

Query: 67  SVESMQKLSNTEIISPYSVSSEDSPGLTHIQDDNANVEIEAMDLIFLFEVEGG 120
           SVES+QKL N EIISPYSVSSEDSPGL   Q+D AN EIEA+DLI LFE E G
Sbjct: 281 SVESIQKLLNIEIISPYSVSSEDSPGLLQAQEDKANFEIEAVDLISLFEGECG 333

[Close]
BLAST of CsaV3_5G020540 vs. NCBI nr
Match: TYK28317.1 (transportin-3 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 9.6e-05
Identity = 30/51 (58.82%), Postives = 38/51 (74.51%), Query Frame = 0 

Query: 67  SVESMQKLSNTEIISPYSVSSEDSPGLTHIQDDNANVEIEAMDLIFLFEVE 118
           SV+S QK SNTEI+SP SVSSE+S GL +      N EIEA+DLI L+E++
Sbjct: 362 SVDSFQKKSNTEIVSPCSVSSEESAGLKYTYKGETNAEIEAVDLITLYEMD 412

[Close]
BLAST of CsaV3_5G020540 vs. ExPASy TrEMBL
Match: A0A5D3CA98 (Protein ENHANCED DOWNY MILDEW 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002720 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 6.3e-10
Identity = 40/53 (75.47%), Postives = 43/53 (81.13%), Query Frame = 0 

Query: 67  SVESMQKLSNTEIISPYSVSSEDSPGLTHIQDDNANVEIEAMDLIFLFEVEGG 120
           SVES+QKL N EIISPYSVSSEDSPGL   Q+D AN EIEA+DLI LFE E G
Sbjct: 281 SVESIQKLLNIEIISPYSVSSEDSPGLLQAQEDKANFEIEAVDLISLFEGECG 333

[Close]
BLAST of CsaV3_5G020540 vs. ExPASy TrEMBL
Match: A0A5D3DWV6 (Transportin-3 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001420 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 4.6e-05
Identity = 30/51 (58.82%), Postives = 38/51 (74.51%), Query Frame = 0 

Query: 67  SVESMQKLSNTEIISPYSVSSEDSPGLTHIQDDNANVEIEAMDLIFLFEVE 118
           SV+S QK SNTEI+SP SVSSE+S GL +      N EIEA+DLI L+E++
Sbjct: 362 SVDSFQKKSNTEIVSPCSVSSEESAGLKYTYKGETNAEIEAVDLITLYEMD 412

The following BLAST results are available for this feature:
BLAST of CsaV3_5G020540 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8648358.18.2e-81100.00hypothetical protein Csa_023117 [Cucumis sativus][more]
KAE8650473.11.6e-2054.03hypothetical protein Csa_011613, partial [Cucumis sativus][more]
KAE8648438.12.3e-1959.05hypothetical protein Csa_008077, partial [Cucumis sativus][more]
TYK08108.11.3e-0975.47protein ENHANCED DOWNY MILDEW 2 [Cucumis melo var. makuwa][more]
TYK28317.19.6e-0558.82transportin-3 isoform X2 [Cucumis melo var. makuwa][more]
BLAST of CsaV3_5G020540 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G020540 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CA986.3e-1075.47Protein ENHANCED DOWNY MILDEW 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5D3DWV64.6e-0558.82Transportin-3 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
BLAST of CsaV3_5G020540 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G020540.1CsaV3_5G020540.1mRNA