CsaV3_5G020490 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G020490
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5: 15372095 .. 15372435 (+)
RNA-Seq ExpressionCsaV3_5G020490
SyntenyCsaV3_5G020490
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCCTCAGCATGACATACGATGGAGATGACATTGACAATCTAAACATCAAATACAGGTTGGGAAGGAAACTTCCTATACTGGACTTTAGTCTACAGAAAGTGTAGGCCAATTGGGACATCTAAGTGGCAAAGCTCTGCATGTGGGAGATAATGGTCTTTTGGTTCTACTTATGATATAAAGTACTATCAGTCAAACTCCTCATAATATCATCTAGAGTGATGTTGGAACTACCTTGCCCTTGTACACCTTAGTTTCCTTGGCCTCCTCAATGGTTGTAGTTGTAAGTCCTTCCACCCTGCTAGTTCTTAGTGGAGTTCATCCAGTAACAAACTTCTAA

mRNA sequence

ATGACCCTCAGCATGACATACGATGGAGATGACATTGACAATCTAAACATCAAATACAGGTTGGGAAGGAAACTTCCTATACTGGACTTTAGTCTACAGAAAAGTGATGTTGGAACTACCTTGCCCTTGTACACCTTAGTTTCCTTGGCCTCCTCAATGGTTGTAGTTGTAAGTCCTTCCACCCTGCTAGTTCTTAGTGGAGTTCATCCAGTAACAAACTTCTAA

Coding sequence (CDS)

ATGACCCTCAGCATGACATACGATGGAGATGACATTGACAATCTAAACATCAAATACAGGTTGGGAAGGAAACTTCCTATACTGGACTTTAGTCTACAGAAAAGTGATGTTGGAACTACCTTGCCCTTGTACACCTTAGTTTCCTTGGCCTCCTCAATGGTTGTAGTTGTAAGTCCTTCCACCCTGCTAGTTCTTAGTGGAGTTCATCCAGTAACAAACTTCTAA

Protein sequence

MTLSMTYDGDDIDNLNIKYRLGRKLPILDFSLQKSDVGTTLPLYTLVSLASSMVVVVSPSTLLVLSGVHPVTNF*
Homology
[Close]
BLAST of CsaV3_5G020490 vs. NCBI nr
Match: KGN50916.1 (hypothetical protein Csa_023084 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 8.6e-31
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 1  MTLSMTYDGDDIDNLNIKYRLGRKLPILDFSLQKSDVGTTLPLYTLVSLASSMVVVVSPS 60
          MTLSMTYDGDDIDNLNIKYRLGRKLPILDFSLQKSDVGTTLPLYTLVSLASSMVVVVSPS
Sbjct: 1  MTLSMTYDGDDIDNLNIKYRLGRKLPILDFSLQKSDVGTTLPLYTLVSLASSMVVVVSPS 60

Query: 61 TLLVLSGVHPVTNF 75
          TLLVLSGVHPVTNF
Sbjct: 61 TLLVLSGVHPVTNF 74

[Close]
BLAST of CsaV3_5G020490 vs. ExPASy TrEMBL
Match: A0A0A0KT63 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G325010 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 4.2e-31
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 1  MTLSMTYDGDDIDNLNIKYRLGRKLPILDFSLQKSDVGTTLPLYTLVSLASSMVVVVSPS 60
          MTLSMTYDGDDIDNLNIKYRLGRKLPILDFSLQKSDVGTTLPLYTLVSLASSMVVVVSPS
Sbjct: 1  MTLSMTYDGDDIDNLNIKYRLGRKLPILDFSLQKSDVGTTLPLYTLVSLASSMVVVVSPS 60

Query: 61 TLLVLSGVHPVTNF 75
          TLLVLSGVHPVTNF
Sbjct: 61 TLLVLSGVHPVTNF 74

The following BLAST results are available for this feature:
BLAST of CsaV3_5G020490 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50916.18.6e-31100.00hypothetical protein Csa_023084 [Cucumis sativus][more]
BLAST of CsaV3_5G020490 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G020490 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KT634.2e-31100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G325010 PE=4 SV=1[more]
BLAST of CsaV3_5G020490 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G020490.1CsaV3_5G020490.1mRNA