CsaV3_5G020390 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G020390
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5: 15277664 .. 15278229 (+)
RNA-Seq ExpressionCsaV3_5G020390
SyntenyCsaV3_5G020390
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGTGCAATAAGGATCGGAAGCCTTTCATTGAAATAGTAAGCGAAGCGCCCAATTCAAGGTCTGGAGGTGTGCATAGGTTGGGCTTTCTAGGTAGCTATAAGGCGCTTTCAACTCTTAGGGCGTGTCTGAACCTAGGAGTGGGGAATTGAGTCCCTCTACAAACAAGGGAAAATACTCGCCACGGGCCATGAAATATGAGAATCTCGGCTGGAGACTAGAAGAAAGCCTATCTCCGAAAATAGTCCGAAAACTCCCCTAATTGAGCTAAGGAGGACGGTCAATGCAATTTAAGTAAGGAGAGGATCAAAGAACAAGAGTGGGAAGAACATGATATTATTGACAGGGATATTGTAGGAGTTGACGGCTCGCCGACGAGATTTATTAGTGGGAGAGGCGCAAATTAAGTTCTAATGGATAGTCCTACAGACCCATTGGCGAGTACTTTTTGGAGAAGAGGTGCAAAGGATCAAAGAAGATTTTGAAAACGTCCTACGGTTCGAAGGTGAAAGAAGATTTCCAGAAGGCACAAAGAGCGAGGAGCAAAGATCTATGGCCCACGTAG

mRNA sequence

ATGAGGTGCAATAAGGATCGGAAGCCTTTCATTGAAATAGTAAGCGAAGCGCCCAATTCAAGGTCTGGAGGTGTGCATAGACCCATTGGCGAGTACTTTTTGGAGAAGAGGTGCAAAGGATCAAAGAAGATTTTGAAAACGTCCTACGGTTCGAAGGTGAAAGAAGATTTCCAGAAGGCACAAAGAGCGAGGAGCAAAGATCTATGGCCCACGTAG

Coding sequence (CDS)

ATGAGGTGCAATAAGGATCGGAAGCCTTTCATTGAAATAGTAAGCGAAGCGCCCAATTCAAGGTCTGGAGGTGTGCATAGACCCATTGGCGAGTACTTTTTGGAGAAGAGGTGCAAAGGATCAAAGAAGATTTTGAAAACGTCCTACGGTTCGAAGGTGAAAGAAGATTTCCAGAAGGCACAAAGAGCGAGGAGCAAAGATCTATGGCCCACGTAG

Protein sequence

MRCNKDRKPFIEIVSEAPNSRSGGVHRPIGEYFLEKRCKGSKKILKTSYGSKVKEDFQKAQRARSKDLWPT*
Homology
[Close]
BLAST of CsaV3_5G020390 vs. NCBI nr
Match: KAE8648348.1 (hypothetical protein Csa_023121 [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 8.8e-33
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 1  MRCNKDRKPFIEIVSEAPNSRSGGVHRPIGEYFLEKRCKGSKKILKTSYGSKVKEDFQKA 60
          MRCNKDRKPFIEIVSEAPNSRSGGVHRPIGEYFLEKRCKGSKKILKTSYGSKVKEDFQKA
Sbjct: 1  MRCNKDRKPFIEIVSEAPNSRSGGVHRPIGEYFLEKRCKGSKKILKTSYGSKVKEDFQKA 60

Query: 61 QRARSKDLWPT 72
          QRARSKDLWPT
Sbjct: 61 QRARSKDLWPT 71

[Close]
BLAST of CsaV3_5G020390 vs. ExPASy TrEMBL
Match: A0A0A0KPV6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G321470 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.1e-09
Identity = 44/103 (42.72%), Postives = 52/103 (50.49%), Query Frame = 0 

Query: 1   MRCNKDRKPFIEIVSEAPNSRSGGVHR--------------------------------- 60
           MRCNKDRKPFIEIVSEAPNSRSGGVHR                                 
Sbjct: 292 MRCNKDRKPFIEIVSEAPNSRSGGVHRLGFLESRLETIRKPISENSPKTPLIELRRTSGG 351

Query: 61  PIGEYFLEKRCKGSKKILKTSYGSKVKEDFQKAQRARSKDLWP 71
           PIGEYFLE+RCK     +     +++KEDF+   R   +  +P
Sbjct: 352 PIGEYFLEERCK-----VYCVAVARIKEDFENVLRFEGERRFP 389

The following BLAST results are available for this feature:
BLAST of CsaV3_5G020390 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8648348.18.8e-33100.00hypothetical protein Csa_023121 [Cucumis sativus][more]
BLAST of CsaV3_5G020390 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G020390 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KPV61.1e-0942.72Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G321470 PE=4 SV=1[more]
BLAST of CsaV3_5G020390 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G020390.1CsaV3_5G020390.1mRNA