CsaV3_5G020200 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G020200
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Transposon TX1 uncharacterized 149 kDa protein
Location	chr5: 14981922 .. 14982823 (-)
RNA-Seq Expression	CsaV3_5G020200
Synteny	CsaV3_5G020200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGATCATCTCATCGAATGTTCATGGCTTGAATTCCTGGAAGAAACGTGCCCTGGTTAAGAGGTCGTTGCAGCAACAGAACCCGAGTATTGTTCTTCTTCAGGAAACCAAACTTGATGATACCGATTCCAATATTATTAAATCCATTTGGAGCTCCCCGCTTATTGGCTGGACGACGCTTGATATGATTGATACTTTGGGTGGTCTCCTTATTTTATGACGCACACCTGATTTCGTTGTTCTTGAGGTTATACAAAGCCTTTATACAGTTTCTATACATATTTCCTTGGCTGATGGTTTTTCGTTTTCAACTGTACATGGCCCATCCGATGGTTTGGATCATCCAAATTTTTGGCAGGAACTTGATGATTTGGTGGGATTGGGAGGCAATTCTTGGATTATTGGTGGTGATTTTAATATAACCAGATGGTCCTGGGAGAAATCGCATGATCAATCTGTTACAAAATAACATGTGGCTTTTCAACCAACAGATTGCTAATTATCATTTGAGGGACATGCCTCTAAAAAAATGCAACCTTGGTCCAGGTCGGGATGTACCCAATCTTCTTAATTGATCGTTTATTGGTTACTGACATTTGCGCTATTAAATTTGGATCCTTTCAGGTTCATCAATTAGATCATGTCGATCATTTTCCTCTTGCTATGACTACAGGTGATATTGATTGGGGTCCATGCCCTTTCAAATTCGAGAACTCCTGGCTCTCTACTCCATCCTTTCGGCCACCTGTGGAAACTTGGTGGACAAACAATAGGGTTGCTGGTTGGCCTAGACATGGAATGATGATGAAGCTCAAAGCATTAAAATGTTCCTTTCGTTCATGGAATAACAATAAGCATAGAGAGGCTACTAAATTACCATCCCTTATCTCTCAGCTCTGA

mRNA sequence

ATGAAGATCATCTCATCGAATGTTCATGGCTTGAATTCCTGGAAGAAACGTGCCCTGGTTAAGAGGTCGTTGCAGCAACAGAACCCGAGTATTGTTCTTCTTCAGGAAACCAAACTTGATGATACCGATTCCAATATTATTAAATCCATTTGGAGCTCCCCGCTTATTGGCTGGACGACGCTTGATATGATTGATACTTTGGGTGATGGTCCTGGGAGAAATCGCATGATCAATCTGTTACAAAATAACATGTGGCTTTTCAACCAACAGATTGCTAATTATCATTTGAGGGACATGCCTCTAAAAAAATGCAACCTTGGTCCAGGTCGGGATGTTCATCAATTAGATCATGTCGATCATTTTCCTCTTGCTATGACTACAGGTGATATTGATTGGGGTCCATGCCCTTTCAAATTCGAGAACTCCTGGCTCTCTACTCCATCCTTTCGGCCACCTGTGGAAACTTGGTGGACAAACAATAGGGTTGCTGGTTGGCCTAGACATGGAATGATGATGAAGCTCAAAGCATTAAAATGTTCCTTTCGTTCATGGAATAACAATAAGCATAGAGAGGCTACTAAATTACCATCCCTTATCTCTCAGCTCTGA

Coding sequence (CDS)

ATGAAGATCATCTCATCGAATGTTCATGGCTTGAATTCCTGGAAGAAACGTGCCCTGGTTAAGAGGTCGTTGCAGCAACAGAACCCGAGTATTGTTCTTCTTCAGGAAACCAAACTTGATGATACCGATTCCAATATTATTAAATCCATTTGGAGCTCCCCGCTTATTGGCTGGACGACGCTTGATATGATTGATACTTTGGGTGATGGTCCTGGGAGAAATCGCATGATCAATCTGTTACAAAATAACATGTGGCTTTTCAACCAACAGATTGCTAATTATCATTTGAGGGACATGCCTCTAAAAAAATGCAACCTTGGTCCAGGTCGGGATGTTCATCAATTAGATCATGTCGATCATTTTCCTCTTGCTATGACTACAGGTGATATTGATTGGGGTCCATGCCCTTTCAAATTCGAGAACTCCTGGCTCTCTACTCCATCCTTTCGGCCACCTGTGGAAACTTGGTGGACAAACAATAGGGTTGCTGGTTGGCCTAGACATGGAATGATGATGAAGCTCAAAGCATTAAAATGTTCCTTTCGTTCATGGAATAACAATAAGCATAGAGAGGCTACTAAATTACCATCCCTTATCTCTCAGCTCTGA

Protein sequence

MKIISSNVHGLNSWKKRALVKRSLQQQNPSIVLLQETKLDDTDSNIIKSIWSSPLIGWTTLDMIDTLGDGPGRNRMINLLQNNMWLFNQQIANYHLRDMPLKKCNLGPGRDVHQLDHVDHFPLAMTTGDIDWGPCPFKFENSWLSTPSFRPPVETWWTNNRVAGWPRHGMMMKLKALKCSFRSWNNNKHREATKLPSLISQL*

Homology

[Close]

BLAST of CsaV3_5G020200 vs. NCBI nr
Match: KAE8648339.1 (hypothetical protein Csa_023126 [Cucumis sativus])

HSP 1 Score: 436.4 bits (1121), Expect = 1.3e-118
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1   MKIISSNVHGLNSWKKRALVKRSLQQQNPSIVLLQETKLDDTDSNIIKSIWSSPLIGWTT 60
           MKIISSNVHGLNSWKKRALVKRSLQQQNPSIVLLQETKLDDTDSNIIKSIWSSPLIGWTT
Sbjct: 1   MKIISSNVHGLNSWKKRALVKRSLQQQNPSIVLLQETKLDDTDSNIIKSIWSSPLIGWTT 60

Query: 61  LDMIDTLGDGPGRNRMINLLQNNMWLFNQQIANYHLRDMPLKKCNLGPGRDVHQLDHVDH 120
           LDMIDTLGDGPGRNRMINLLQNNMWLFNQQIANYHLRDMPLKKCNLGPGRDVHQLDHVDH
Sbjct: 61  LDMIDTLGDGPGRNRMINLLQNNMWLFNQQIANYHLRDMPLKKCNLGPGRDVHQLDHVDH 120

Query: 121 FPLAMTTGDIDWGPCPFKFENSWLSTPSFRPPVETWWTNNRVAGWPRHGMMMKLKALKCS 180
           FPLAMTTGDIDWGPCPFKFENSWLSTPSFRPPVETWWTNNRVAGWPRHGMMMKLKALKCS
Sbjct: 121 FPLAMTTGDIDWGPCPFKFENSWLSTPSFRPPVETWWTNNRVAGWPRHGMMMKLKALKCS 180

Query: 181 FRSWNNNKHREATKLPSLISQL 203
           FRSWNNNKHREATKLPSLISQL
Sbjct: 181 FRSWNNNKHREATKLPSLISQL 202

[Close]

BLAST of CsaV3_5G020200 vs. NCBI nr
Match: KAE8647279.1 (hypothetical protein Csa_002929 [Cucumis sativus])

HSP 1 Score: 238.4 bits (607), Expect = 5.3e-59
Identity = 132/230 (57.39%), Postives = 142/230 (61.74%), Query Frame = 0


Query: 1   MKIISSNVHGLNSWKKRALVKRSLQQQNPSIVLLQETKLDDTDSNIIKSIWSSPLIGWTT 60
           MKIIS N HGLNS KKRALVK  LQQQNPSIVLL+ETKLDDTDS+IIK IWS P I WTT
Sbjct: 1   MKIISWNGHGLNSCKKRALVKGLLQQQNPSIVLLRETKLDDTDSHIIKYIWSYPFIDWTT 60

Query: 61  LDMIDTLGD--------------------GPGRNRMIN-----------------LLQNN 120
           LD+IDTLG                     G G +  IN                  + NN
Sbjct: 61  LDVIDTLGGLLIIWRSPDFTLLEELDDLVGLGGDSWINGGDLNITRWSWEKSHDQFIPNN 120

Query: 121 MWLFNQQIANYHLRDMPLKKCNLGPGRDVHQLDHVDHFPLAMTTGDIDWGPCPFKFENSW 180
           M LFNQ IANYHLRD+                  +DHFP AM   DIDWGPCPF+ E SW
Sbjct: 121 MQLFNQWIANYHLRDIVT----------------LDHFPPAMIACDIDWGPCPFRIEKSW 180

Query: 181 LSTPSFRPPVETWWTNNRVAGWPRHGMMMKLKALKCSFRSWNNNKHREAT 194
           LSTP F P VETWWTNNRVAGWP HG+MMKLKAL   FRSWNNN+  EAT
Sbjct: 181 LSTPLFLPLVETWWTNNRVAGWPGHGLMMKLKALIMFFRSWNNNQFGEAT 214

[Close]

BLAST of CsaV3_5G020200 vs. NCBI nr
Match: TYK17996.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 145.2 bits (365), Expect = 6.1e-31
Identity = 66/78 (84.62%), Postives = 70/78 (89.74%), Query Frame = 0


Query: 125 MTTGDIDWGPCPFKFENSWLSTPSFRPPVETWWTNNRVAGWPRHGMMMKLKALKCSFRSW 184
           MT GDID GPCPF+FENSWLSTPSF P VETWWTNNRVAGWPRHG+MMKLKAL+   RSW
Sbjct: 1   MTAGDIDRGPCPFRFENSWLSTPSFWPLVETWWTNNRVAGWPRHGLMMKLKALQMFLRSW 60

Query: 185 NNNKHREATKLPSLISQL 203
            NN+HREATKLPSLISQL
Sbjct: 61  -NNQHREATKLPSLISQL 77

[Close]

BLAST of CsaV3_5G020200 vs. NCBI nr
Match: XP_022158956.1 (uncharacterized protein LOC111025405 [Momordica charantia])

HSP 1 Score: 127.1 bits (318), Expect = 1.7e-25
Identity = 92/307 (29.97%), Postives = 128/307 (41.69%), Query Frame = 0


Query: 1   MKIISSNVHGLNSWKKRALVKRSLQQQNPSIVLLQETKLDDTDSNIIKSIWSSPLIGWTT 60
           MK ++ NV GL+SWKK AL+K+ + + NP++V+LQETKL   D  I+KS+WS+  I W+ 
Sbjct: 1   MKFLTWNVRGLDSWKKGALIKQFISRLNPNVVILQETKLSYMDILIVKSLWSAHGINWSA 60

Query: 61  LD---------------------MID---------TLGD----------GPGRNRMINL- 120
           LD                     MI+          L D          GP       L 
Sbjct: 61  LDASGMASGILILWNDPDLKAAEMIEGVFSLTINFCLSDGFLFWVSGIYGPSTTEFHYLF 120

Query: 121 -----------------------------------LQNNMWLFNQQIANYHLRDMPLKK- 180
                                              L  +MWLFN  I +  L D+PL   
Sbjct: 121 WQELLDLSDLCENHWILAGDFNVTRWSWEKSNGRPLTKSMWLFNSFIEDSSLIDVPLTNG 180

Query: 181 --------------CNLGPGRDVHQL----------DHVDHFPLAMTTGDIDWGPCPFKF 203
                         C L     + +L             DHFP+ +  G  +WG  PF+F
Sbjct: 181 QHTWSRNTSFSLIDCFLLTNGCIDKLGMPIAKRMTRTTSDHFPILLDFGQNNWGLTPFRF 240

[Close]

BLAST of CsaV3_5G020200 vs. NCBI nr
Match: RVX07687.1 (hypothetical protein CK203_021949 [Vitis vinifera])

HSP 1 Score: 114.4 bits (285), Expect = 1.2e-21
Identity = 72/210 (34.29%), Postives = 98/210 (46.67%), Query Frame = 0


Query: 1   MKIISSNVHGLNSWKKRALVKRSLQQQNPSIVLLQETKLDDTDSNIIKSIWSSP------ 60
           MKI+S N  GL S KKR  V+R L  QNP +V+LQETK +  D   + S+W         
Sbjct: 431 MKILSWNTRGLGSRKKRRTVRRFLSTQNPDVVMLQETKREIWDRRFVSSVWKGRSWSGLL 490

Query: 61  --LIG-------WTTLDMIDT---LGDGPGRNRMI--NLLQNNMWLFNQQIANYHLRDMP 120
             L+G       W ++    T   LG     +  +  + L  NM  F++ I    L D P
Sbjct: 491 FLLVGLRGDCDLWDSIKFKCTEKVLGSSLRISEKMGDSRLTVNMRCFDEFIRESGLLDPP 550

Query: 121 LKKC-----NLGPGRDVHQLDHVDHFPLAMTTGDIDWGPCPFKFENSWLSTPSFRPPVET 180
           L+       N+   R + +    DH P+ + T  + WGP PF+FEN WL  P F+     
Sbjct: 551 LRNAAFTWSNMQFSRGLPRWTS-DHSPICLETNPLKWGPTPFRFENMWLLHPEFKEKFRD 610

Query: 181 WWTNNRVAGWPRHGMMMKLKALKCSFRSWN 186
           WW    V GW  H  M KLK +K   + WN
Sbjct: 611 WWQECTVEGWEGHKFMRKLKFIKSKLKEWN 639

[Close]

BLAST of CsaV3_5G020200 vs. ExPASy TrEMBL
Match: A0A0A0KMS2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G314840 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 9.8e-51
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 112 VHQLDHVDHFPLAMTTGDIDWGPCPFKFENSWLSTPSFRPPVETWWTNNRVAGWPRHGMM 171
           VHQLDHVDHFPLAMTTGDIDWGPCPFKFENSWLSTPSFRPPVETWWTNNRVAGWPRHGMM
Sbjct: 25  VHQLDHVDHFPLAMTTGDIDWGPCPFKFENSWLSTPSFRPPVETWWTNNRVAGWPRHGMM 84

Query: 172 MKLKALKCSFRSWNNNKHREATKLPSLISQL 203
           MKLKALKCSFRSWNNNKHREATKLPSLISQL
Sbjct: 85  MKLKALKCSFRSWNNNKHREATKLPSLISQL 115

[Close]

BLAST of CsaV3_5G020200 vs. ExPASy TrEMBL
Match: A0A0A0KDG4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G400290 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 2.3e-44
Identity = 108/199 (54.27%), Postives = 117/199 (58.79%), Query Frame = 0


Query: 1   MKIISSNVHGLNSWKKRALVKRSLQQQNPSIVLLQETKLDDTDSNIIKSIWSSPLIGWTT 60
           MKIIS N HGLNS KKRALVK  LQQQNPSIVLL+ETKLDDTDS+IIK IWS P I WTT
Sbjct: 1   MKIISWNGHGLNSCKKRALVKGLLQQQNPSIVLLRETKLDDTDSHIIKYIWSYPFIDWTT 60

Query: 61  LDMIDTLGD--------------------GPGRNRMIN-----------------LLQNN 120
           LD+IDTLG                     G G +  IN                  + NN
Sbjct: 61  LDVIDTLGGLLIIWRSPDFTLLEELDDLVGLGGDSWINGGDLNITRWSWEKSHDQFIPNN 120

Query: 121 MWLFNQQIANYHLRDMPLKKCNLGPGRDVHQLDHVDHFPLAMTTGDIDWGPCPFKFENSW 163
           M LFNQ IANYHLRD+                  +DHFP AM   DIDWGPCPF+ E SW
Sbjct: 121 MQLFNQWIANYHLRDIVT----------------LDHFPPAMIACDIDWGPCPFRIEKSW 180

[Close]

BLAST of CsaV3_5G020200 vs. ExPASy TrEMBL
Match: A0A5D3D3Q8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003050 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 3.0e-31
Identity = 66/78 (84.62%), Postives = 70/78 (89.74%), Query Frame = 0


Query: 125 MTTGDIDWGPCPFKFENSWLSTPSFRPPVETWWTNNRVAGWPRHGMMMKLKALKCSFRSW 184
           MT GDID GPCPF+FENSWLSTPSF P VETWWTNNRVAGWPRHG+MMKLKAL+   RSW
Sbjct: 1   MTAGDIDRGPCPFRFENSWLSTPSFWPLVETWWTNNRVAGWPRHGLMMKLKALQMFLRSW 60

Query: 185 NNNKHREATKLPSLISQL 203
            NN+HREATKLPSLISQL
Sbjct: 61  -NNQHREATKLPSLISQL 77

[Close]

BLAST of CsaV3_5G020200 vs. ExPASy TrEMBL
Match: A0A6J1E2G6 (uncharacterized protein LOC111025405 OS=Momordica charantia OX=3673 GN=LOC111025405 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 8.4e-26
Identity = 92/307 (29.97%), Postives = 128/307 (41.69%), Query Frame = 0


Query: 1   MKIISSNVHGLNSWKKRALVKRSLQQQNPSIVLLQETKLDDTDSNIIKSIWSSPLIGWTT 60
           MK ++ NV GL+SWKK AL+K+ + + NP++V+LQETKL   D  I+KS+WS+  I W+ 
Sbjct: 1   MKFLTWNVRGLDSWKKGALIKQFISRLNPNVVILQETKLSYMDILIVKSLWSAHGINWSA 60

Query: 61  LD---------------------MID---------TLGD----------GPGRNRMINL- 120
           LD                     MI+          L D          GP       L 
Sbjct: 61  LDASGMASGILILWNDPDLKAAEMIEGVFSLTINFCLSDGFLFWVSGIYGPSTTEFHYLF 120

Query: 121 -----------------------------------LQNNMWLFNQQIANYHLRDMPLKK- 180
                                              L  +MWLFN  I +  L D+PL   
Sbjct: 121 WQELLDLSDLCENHWILAGDFNVTRWSWEKSNGRPLTKSMWLFNSFIEDSSLIDVPLTNG 180

Query: 181 --------------CNLGPGRDVHQL----------DHVDHFPLAMTTGDIDWGPCPFKF 203
                         C L     + +L             DHFP+ +  G  +WG  PF+F
Sbjct: 181 QHTWSRNTSFSLIDCFLLTNGCIDKLGMPIAKRMTRTTSDHFPILLDFGQNNWGLTPFRF 240

[Close]

BLAST of CsaV3_5G020200 vs. ExPASy TrEMBL
Match: A0A438JFG5 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_021949 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 5.6e-22
Identity = 72/210 (34.29%), Postives = 98/210 (46.67%), Query Frame = 0


Query: 1   MKIISSNVHGLNSWKKRALVKRSLQQQNPSIVLLQETKLDDTDSNIIKSIWSSP------ 60
           MKI+S N  GL S KKR  V+R L  QNP +V+LQETK +  D   + S+W         
Sbjct: 431 MKILSWNTRGLGSRKKRRTVRRFLSTQNPDVVMLQETKREIWDRRFVSSVWKGRSWSGLL 490

Query: 61  --LIG-------WTTLDMIDT---LGDGPGRNRMI--NLLQNNMWLFNQQIANYHLRDMP 120
             L+G       W ++    T   LG     +  +  + L  NM  F++ I    L D P
Sbjct: 491 FLLVGLRGDCDLWDSIKFKCTEKVLGSSLRISEKMGDSRLTVNMRCFDEFIRESGLLDPP 550

Query: 121 LKKC-----NLGPGRDVHQLDHVDHFPLAMTTGDIDWGPCPFKFENSWLSTPSFRPPVET 180
           L+       N+   R + +    DH P+ + T  + WGP PF+FEN WL  P F+     
Sbjct: 551 LRNAAFTWSNMQFSRGLPRWTS-DHSPICLETNPLKWGPTPFRFENMWLLHPEFKEKFRD 610

Query: 181 WWTNNRVAGWPRHGMMMKLKALKCSFRSWN 186
           WW    V GW  H  M KLK +K   + WN
Sbjct: 611 WWQECTVEGWEGHKFMRKLKFIKSKLKEWN 639

The following BLAST results are available for this feature:

BLAST of CsaV3_5G020200 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648339.1	1.3e-118	100.00	hypothetical protein Csa_023126 [Cucumis sativus]	[more]
KAE8647279.1	5.3e-59	57.39	hypothetical protein Csa_002929 [Cucumis sativus]	[more]
TYK17996.1	6.1e-31	84.62	reverse transcriptase [Cucumis melo var. makuwa]	[more]
XP_022158956.1	1.7e-25	29.97	uncharacterized protein LOC111025405 [Momordica charantia]	[more]
RVX07687.1	1.2e-21	34.29	hypothetical protein CK203_021949 [Vitis vinifera]	[more]

BLAST of CsaV3_5G020200 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G020200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMS2	9.8e-51	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G314840 PE=4 SV=1	[more]
A0A0A0KDG4	2.3e-44	54.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G400290 PE=4 SV=1	[more]
A0A5D3D3Q8	3.0e-31	84.62	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold30...	[more]
A0A6J1E2G6	8.4e-26	29.97	uncharacterized protein LOC111025405 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A438JFG5	5.6e-22	34.29	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_021949 PE=4 SV=1	[more]

BLAST of CsaV3_5G020200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	GENE3D	3.60.10.10	Endonuclease/exonuclease/phosphatase	coord: 1..62 e-value: 2.0E-9 score: 39.5
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	SUPERFAMILY	56219	DNase I-like	coord: 1..65
None	No IPR available	PANTHER	PTHR22748:SF11	DNA-(APURINIC OR APYRIMIDINIC SITE) LYASE CHLOROPLASTIC	coord: 1..68
IPR004808	AP endonuclease 1	PANTHER	PTHR22748	AP ENDONUCLEASE	coord: 1..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G020200.1	CsaV3_5G020200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
molecular_function	GO:0004518	nuclease activity