CsaV3_5G019980 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G019980
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	plastid transcriptionally active 6
Location	chr5: 14570940 .. 14572832 (-)
RNA-Seq Expression	CsaV3_5G019980
Synteny	CsaV3_5G019980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGATGAGGAAATGGAGGAATTCAACAGCAACAAAGATTTCGACATCGAGTACGATCCTCTAGTCGCCGCGATAGCTGCAGCAGCGGGTTCCGGCGACGTTGGCGATGAGAATATCTCGATTGTGCAGAGCAAAAGCTTCATGTTCACACAGGGATGGGATTCGGAGATGATTGTGGATCATAGGATAAATGAGGAGGAATTTCATAATATTAGTTTTATGCACTGTCATTTCTTCATTAGGAAGTCGTCGGATCCCAACAGCGATGTTTATGATTTTAAAGAGGTTAGTGGCAAAATTTGCTTAGTTTCATTTCAAACTTGGCTTTATCAGATTCATTTGATAGTTAAAAAAGTTTTCGTTGATGTGTTTCTTGGTTGTAGATGTATGTTACTCCTCCGGATACTGATGTTTATGTCGTCCCCAAAGTTCTTACTCCCTCCAATGCCTCAAAAGGTATTATTGTTCTTTCTTTGCATTTATATACATGATAAAATGGTGTAAATTATTATGTTTTAGTCTTGAACTCTAGATTAAAAACCCGTTTCAACCATTTTCATTAGTTTTTAACTAACAATTGAACAGAAACTTAACCTGTTAGTTTAGCCATTTTCATTAACTTTACATTAACAATAACTAGTGCAATTGGCCGACATTTATCAAGCCTCTCTAAGTTTTCATTTACTTTTTGAAGTCTTATTACTTTAGTCTTACCACATTTGCCTTTAATCCTCTGTGGTTAATTGTTTACATTATGCTATGTTTTTGTTGTATCCTTTTGTATGTTGAAGCACTAGTCTCTGTTCATCTCCTTTATGAAAAGTTTCAATCATTTTCTATAAACAGATTTCGATTTAGCATGTTCATTTAGTCAGTCGGCAAATGTTTACAGACGGTCATTTAAGTTTTTGTGGAAGAACTGTTGGTAAGTTAACAGTTAATTTGATGAAGAAATCTGAGACTAAAACTGACTTATTGAAGGTTAAGGGACTTAAACACAATAATTAAAAGTTAATAGAACAATATGGAACAAACATCATAGTTCAAGGACCAAAATAAGATTTTAAGGAATTTTGTTTATACCATTGTTCAAGGACCAAAATAAGATTTTAAGGAATTTCAGTAGTGTATGATCATACTTTTCTTCACAACTGCAGTATATTAGATGTGCTTAGAGTGATTATGGATGCTACAATGTCATAGAACCACCTATTGATGCACCTAGAGATCCATTATACAAGTCTGAAAAGGAGGTTCTTAAGGTAAGGTTGGACTTAAGAATTTGATGATTGTTCACTCTATTTTTCTATTTCTAGTGAAAGTGATGATAATTTAATGGACTCTTCCATTTCTTTGTAAATCCGAGTATAGGTTTCGCCGCGATACGTTAGAATAGAAGTAGCAAGCATAGTTATACAAAGTGACGTTCATTGACTCAACGACGTTTGAAATTTAAGAATATTATGCATGTGATGGTCTTCTCTTCAGGATGGGAATGTGGACAAAGGATATAAGAATGTGCAAACAATTCATTTATCTTTTGCAGGTTTTCTTGACGAAGCACTTCAAAAATCAAAGGCTGTGGGACCCTGAATTCGTCCTAGATTTTGAGAAAATATATGTAATTGATTCAAAAACCAAGTCAATCACTAGGGCAAAAGTCCTGGTAAGACTTTTTTTTCTTGGCTTTTGCACTGTTTCAGTAATAAGTGAAGTTCTAAACTTCAAGTCGAATTGAAGATTTCAAGCTGCTTCTAGTCTGTTAAAAGGGTTTAAACTACTTCCTTTTGCTCTAACACAGTCACAGTTCCAGGAGGAAGAGATAGGGACAGGAGAAGCGACTTGCTCGTAGTTTGGGACAATGGAAACTCTTTCAAGATCATCCATTCG

mRNA sequence

ATGGACGATGAGGAAATGGAGGAATTCAACAGCAACAAAGATTTCGACATCGAGTACGATCCTCTAGTCGCCGCGATAGCTGCAGCAGCGGGTTCCGGCGACGTTGGCGATGAGAATATCTCGATTGTGCAGAGCAAAAGCTTCATGTTCACACAGGGATGGGATTCGGAGATGATTGTGGATCATAGGATAAATGAGGAGGAATTTCATAATATTAGTTTTATGCACTGTCATTTCTTCATTAGGAAGTCGTCGGATCCCAACAGCGATGTTTATGATTTTAAAGAGATGTATGTTACTCCTCCGGATACTGATGTTTATGTCGTCCCCAAAGTTCTTACTCCCTCCAATGCCTCAAAAGATTTCGATTTAGCATGTTCATTTAGTCAGTCGGCAAATAGTGATTATGGATGCTACAATGTCATAGAACCACCTATTGATGCACCTAGAGATCCATTATACAAGTCTGAAAAGGAGGTTCTTAAGGTTTCGCCGCGATACGTTAGAATAGAAGTAGCAAGCATAGTTATACAAAGTGACGTTTTCTTGACGAAGCACTTCAAAAATCAAAGGCTGTGGGACCCTGAATTCGTCCTAGATTTTGAGAAAATATATGTAATTGATTCAAAAACCAAGTCAATCACTAGGGCAAAAGTCCTGGGACAGGAGAAGCGACTTGCTCGTAGTTTGGGACAATGGAAACTCTTTCAAGATCATCCATTCG

Coding sequence (CDS)

ATGGACGATGAGGAAATGGAGGAATTCAACAGCAACAAAGATTTCGACATCGAGTACGATCCTCTAGTCGCCGCGATAGCTGCAGCAGCGGGTTCCGGCGACGTTGGCGATGAGAATATCTCGATTGTGCAGAGCAAAAGCTTCATGTTCACACAGGGATGGGATTCGGAGATGATTGTGGATCATAGGATAAATGAGGAGGAATTTCATAATATTAGTTTTATGCACTGTCATTTCTTCATTAGGAAGTCGTCGGATCCCAACAGCGATGTTTATGATTTTAAAGAGATGTATGTTACTCCTCCGGATACTGATGTTTATGTCGTCCCCAAAGTTCTTACTCCCTCCAATGCCTCAAAAGATTTCGATTTAGCATGTTCATTTAGTCAGTCGGCAAATAGTGATTATGGATGCTACAATGTCATAGAACCACCTATTGATGCACCTAGAGATCCATTATACAAGTCTGAAAAGGAGGTTCTTAAGGTTTCGCCGCGATACGTTAGAATAGAAGTAGCAAGCATAGTTATACAAAGTGACGTTTTCTTGACGAAGCACTTCAAAAATCAAAGGCTGTGGGACCCTGAATTCGTCCTAGATTTTGAGAAAATATATGTAATTGATTCAAAAACCAAGTCAATCACTAGGGCAAAAGTCCTGGGACAGGAGAAGCGACTTGCTCGTAGTTTGGGACAATGGAAACTCTTTCAAGATCATCCATTCG

Protein sequence

MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIVDHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVTPPDTDVYVVPKVLTPSNASKDFDLACSFSQSANSDYGCYNVIEPPIDAPRDPLYKSEKEVLKVSPRYVRIEVASIVIQSDVFLTKHFKNQRLWDPEFVLDFEKIYVIDSKTKSITRAKVLGQEKRLARSLGQWKLFQDHPFX

Homology

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BLAST of CsaV3_5G019980 vs. NCBI nr
Match: KAE8648326.1 (hypothetical protein Csa_023109, partial [Cucumis sativus])

HSP 1 Score: 488.8 bits (1257), Expect = 2.7e-134
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0


Query: 1   MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIV 60
           MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIV
Sbjct: 1   MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIV 60

Query: 61  DHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVTPPDTDVYVVPKVLTPSNASK 120
           DHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVTPPDTDVYVVPKVLTPSNASK
Sbjct: 61  DHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVTPPDTDVYVVPKVLTPSNASK 120

Query: 121 DFDLACSFSQSANSDYGCYNVIEPPIDAPRDPLYKSEKEVLKVSPRYVRIEVASIVIQSD 180
           DFDLACSFSQSANSDYGCYNVIEPPIDAPRDPLYKSEKEVLKVSPRYVRIEVASIVIQSD
Sbjct: 121 DFDLACSFSQSANSDYGCYNVIEPPIDAPRDPLYKSEKEVLKVSPRYVRIEVASIVIQSD 180

Query: 181 VFLTKHFKNQRLWDPEFVLDFEKIYVIDSKTKSITRAKVLGQEKRLARSLGQWKLFQDHP 240
           VFLTKHFKNQRLWDPEFVLDFEKIYVIDSKTKSITRAKVLGQEKRLARSLGQWKLFQDHP
Sbjct: 181 VFLTKHFKNQRLWDPEFVLDFEKIYVIDSKTKSITRAKVLGQEKRLARSLGQWKLFQDHP 240

Query: 241 F 242
           F
Sbjct: 241 F 241

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BLAST of CsaV3_5G019980 vs. NCBI nr
Match: XP_031745857.1 (uncharacterized protein LOC116406303 [Cucumis sativus])

HSP 1 Score: 324.3 bits (830), Expect = 8.8e-85
Identity = 172/223 (77.13%), Postives = 177/223 (79.37%), Query Frame = 0


Query: 1   MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIV 60
           MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGS DVGDENISIVQSKSF+FTQGWDSEMIV
Sbjct: 1   MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSDDVGDENISIVQSKSFVFTQGWDSEMIV 60

Query: 61  DHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVTPPDTDVYVVPKVLTPSNASK 120
           D+RINEEEFH ISFMHCHFFIRKSSD NSDVYDF+EMYVTPPDTDVYVVPKVL PSNASK
Sbjct: 61  DYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVTPPDTDVYVVPKVLAPSNASK 120

Query: 121 DFDLACSFSQSANSDYGCYNVIEPPIDAPRDPLYKSEKEVLKVSPRYVRIEVASIVIQSD 180
                                 EPPIDAPRDPLYKSEKEVLK                  
Sbjct: 121 ----------------------EPPIDAPRDPLYKSEKEVLK------------------ 180

Query: 181 VFLTKHFKNQRLWDPEFVLDFEKIYVIDSKTKSITRAKVLGQE 224
           VFLTKHFKN+RLWDPEF+LDFEKIYVIDSKTKSITRAKVL  E
Sbjct: 181 VFLTKHFKNRRLWDPEFILDFEKIYVIDSKTKSITRAKVLRLE 183

[Close]

BLAST of CsaV3_5G019980 vs. NCBI nr
Match: XP_038896770.1 (uncharacterized protein LOC120085024 [Benincasa hispida])

HSP 1 Score: 302.4 bits (773), Expect = 3.6e-78
Identity = 157/220 (71.36%), Postives = 172/220 (78.18%), Query Frame = 0


Query: 1   MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIV 60
           MDDEEMEE ++ KDFDIEYDPL AA AAAAGS  VGDENISIVQSKSF+ TQGWDSEMIV
Sbjct: 76  MDDEEMEEVDNKKDFDIEYDPLAAAAAAAAGSDGVGDENISIVQSKSFVSTQGWDSEMIV 135

Query: 61  DHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVTPPDTDVYVVPKVLTPSNASK 120
           D+RINEEEFH IS +HC FFIRK  DP++DVYDF+EMYVTPPDTDVY +PKVL P     
Sbjct: 136 DYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAP----- 195

Query: 121 DFDLACSFSQSANSDYGCYNVIEPPIDAPRDPLYKSEKEVLKVSPRYVRIEVASIVIQSD 180
              +   + + A SDYGCYNV EPPIDAPRDPLYKSEKEVLK                  
Sbjct: 196 ---MPQKYIRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLK------------------ 255

Query: 181 VFLTKHFKNQRLWDPEFVLDFEKIYVIDSKTKSITRAKVL 221
           VFLTKHF+N+RL DPEFVLDFE+IYVIDSKTKSITRAKVL
Sbjct: 256 VFLTKHFRNRRLRDPEFVLDFEEIYVIDSKTKSITRAKVL 269

[Close]

BLAST of CsaV3_5G019980 vs. NCBI nr
Match: XP_031740569.1 (uncharacterized protein LOC101213327 [Cucumis sativus] >KGN54809.2 hypothetical protein Csa_012235 [Cucumis sativus])

HSP 1 Score: 302.4 bits (773), Expect = 3.6e-78
Identity = 157/220 (71.36%), Postives = 172/220 (78.18%), Query Frame = 0


Query: 1   MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIV 60
           MDDEEMEE ++ KDFDIEYDPL AA AAAAGS  VGDENISIVQSKSF+ TQGWDSEMIV
Sbjct: 76  MDDEEMEEVDNKKDFDIEYDPLAAAAAAAAGSDGVGDENISIVQSKSFVSTQGWDSEMIV 135

Query: 61  DHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVTPPDTDVYVVPKVLTPSNASK 120
           D+RINEEEFH IS +HC FFIRK  DP+SDVYDF+EMYVTPPDTDVY +PKVL P     
Sbjct: 136 DYRINEEEFHKISLLHCDFFIRKPPDPDSDVYDFREMYVTPPDTDVYAIPKVLAP----- 195

Query: 121 DFDLACSFSQSANSDYGCYNVIEPPIDAPRDPLYKSEKEVLKVSPRYVRIEVASIVIQSD 180
              +   + + A SDYGCYNV EPPID+PRDPLYKSEKEVLK                  
Sbjct: 196 ---MPQKYIRCAQSDYGCYNVTEPPIDSPRDPLYKSEKEVLK------------------ 255

Query: 181 VFLTKHFKNQRLWDPEFVLDFEKIYVIDSKTKSITRAKVL 221
           VFLTKHF+N+RL DPEFVLDFE+IYVIDSKTKSITRAKVL
Sbjct: 256 VFLTKHFRNRRLRDPEFVLDFEEIYVIDSKTKSITRAKVL 269

[Close]

BLAST of CsaV3_5G019980 vs. NCBI nr
Match: KAA0052214.1 (uncharacterized protein E6C27_scaffold207G00250 [Cucumis melo var. makuwa] >TYK01781.1 uncharacterized protein E5676_scaffold113G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 301.2 bits (770), Expect = 8.0e-78
Identity = 156/220 (70.91%), Postives = 172/220 (78.18%), Query Frame = 0


Query: 1   MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIV 60
           MDDEEMEE ++ KDFDIEYDPL AA AAAAGS  VGDENISIVQSKSF+ TQGWDSEMIV
Sbjct: 76  MDDEEMEEVDNKKDFDIEYDPLAAAAAAAAGSDGVGDENISIVQSKSFVSTQGWDSEMIV 135

Query: 61  DHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVTPPDTDVYVVPKVLTPSNASK 120
           D+RINEEEFH IS +HC FFIRK  DP++DVYDF+EMYVTPPDTDVY +PKVL P     
Sbjct: 136 DYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAP----- 195

Query: 121 DFDLACSFSQSANSDYGCYNVIEPPIDAPRDPLYKSEKEVLKVSPRYVRIEVASIVIQSD 180
              +   + + A SDYGCYNV EPPIDAPRDPLYKSEKEVLK                  
Sbjct: 196 ---MPQKYIRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLK------------------ 255

Query: 181 VFLTKHFKNQRLWDPEFVLDFEKIYVIDSKTKSITRAKVL 221
           VFLTKHF+N+RL DPEFVLDFE+IYVIDSKTKSITRA+VL
Sbjct: 256 VFLTKHFRNRRLRDPEFVLDFEEIYVIDSKTKSITRARVL 269

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BLAST of CsaV3_5G019980 vs. ExPASy Swiss-Prot
Match: Q9XI19 (PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PTAC6 PE=1 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 3.7e-70
Identity = 137/220 (62.27%), Postives = 165/220 (75.00%), Query Frame = 0


Query: 1   MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIV 60
           MDDEE+EE ++ KD+D+EYDPL AAIAAA G GD GD  I+ VQSKSF+ TQGWDS+M+V
Sbjct: 70  MDDEEVEEVDNKKDYDVEYDPLAAAIAAAGGGGD-GD--IAFVQSKSFISTQGWDSDMVV 129

Query: 61  DHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVTPPDTDVYVVPKVLTPSNASK 120
           D+RINE+EFH +S M C FFIRK  DP++DVYDF+EMYVTPPDTD+Y +P+VL P     
Sbjct: 130 DYRINEDEFHKLSLMDCDFFIRKPPDPDNDVYDFREMYVTPPDTDIYSIPRVLAP----- 189

Query: 121 DFDLACSFSQSANSDYGCYNVIEPPIDAPRDPLYKSEKEVLKVSPRYVRIEVASIVIQSD 180
              +   + + A SDYGCYNV EPPIDAPRDPLYKSE+E+                  S 
Sbjct: 190 ---MPQKYIRCAMSDYGCYNVTEPPIDAPRDPLYKSEREI------------------SK 249

Query: 181 VFLTKHFKNQRLWDPEFVLDFEKIYVIDSKTKSITRAKVL 221
           VFLTKH++N+R  DPEFVLD E+IYVIDSKTKSITRA+VL
Sbjct: 250 VFLTKHYRNRRTNDPEFVLDLEEIYVIDSKTKSITRARVL 260

[Close]

BLAST of CsaV3_5G019980 vs. ExPASy TrEMBL
Match: A0A5A7UA32 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00090 PE=4 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 3.9e-78
Identity = 156/220 (70.91%), Postives = 172/220 (78.18%), Query Frame = 0


Query: 1   MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIV 60
           MDDEEMEE ++ KDFDIEYDPL AA AAAAGS  VGDENISIVQSKSF+ TQGWDSEMIV
Sbjct: 76  MDDEEMEEVDNKKDFDIEYDPLAAAAAAAAGSDGVGDENISIVQSKSFVSTQGWDSEMIV 135

Query: 61  DHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVTPPDTDVYVVPKVLTPSNASK 120
           D+RINEEEFH IS +HC FFIRK  DP++DVYDF+EMYVTPPDTDVY +PKVL P     
Sbjct: 136 DYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAP----- 195

Query: 121 DFDLACSFSQSANSDYGCYNVIEPPIDAPRDPLYKSEKEVLKVSPRYVRIEVASIVIQSD 180
              +   + + A SDYGCYNV EPPIDAPRDPLYKSEKEVLK                  
Sbjct: 196 ---MPQKYIRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLK------------------ 255

Query: 181 VFLTKHFKNQRLWDPEFVLDFEKIYVIDSKTKSITRAKVL 221
           VFLTKHF+N+RL DPEFVLDFE+IYVIDSKTKSITRA+VL
Sbjct: 256 VFLTKHFRNRRLRDPEFVLDFEEIYVIDSKTKSITRARVL 269

[Close]

BLAST of CsaV3_5G019980 vs. ExPASy TrEMBL
Match: A0A1S3BAM8 (uncharacterized protein LOC103487613 OS=Cucumis melo OX=3656 GN=LOC103487613 PE=4 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 3.9e-78
Identity = 156/220 (70.91%), Postives = 172/220 (78.18%), Query Frame = 0


Query: 1   MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIV 60
           MDDEEMEE ++ KDFDIEYDPL AA AAAAGS  VGDENISIVQSKSF+ TQGWDSEMIV
Sbjct: 76  MDDEEMEEVDNKKDFDIEYDPLAAAAAAAAGSDGVGDENISIVQSKSFVSTQGWDSEMIV 135

Query: 61  DHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVTPPDTDVYVVPKVLTPSNASK 120
           D+RINEEEFH IS +HC FFIRK  DP++DVYDF+EMYVTPPDTDVY +PKVL P     
Sbjct: 136 DYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAP----- 195

Query: 121 DFDLACSFSQSANSDYGCYNVIEPPIDAPRDPLYKSEKEVLKVSPRYVRIEVASIVIQSD 180
              +   + + A SDYGCYNV EPPIDAPRDPLYKSEKEVLK                  
Sbjct: 196 ---MPQKYIRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLK------------------ 255

Query: 181 VFLTKHFKNQRLWDPEFVLDFEKIYVIDSKTKSITRAKVL 221
           VFLTKHF+N+RL DPEFVLDFE+IYVIDSKTKSITRA+VL
Sbjct: 256 VFLTKHFRNRRLRDPEFVLDFEEIYVIDSKTKSITRARVL 269

[Close]

BLAST of CsaV3_5G019980 vs. ExPASy TrEMBL
Match: A0A6J1IGR4 (uncharacterized protein LOC111477076 OS=Cucurbita maxima OX=3661 GN=LOC111477076 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 1.5e-74
Identity = 154/223 (69.06%), Postives = 170/223 (76.23%), Query Frame = 0


Query: 1   MDDEEMEEFNSNKDFDIEYDPL---VAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSE 60
           M D+EMEE ++ KDFDIEYD L    AA AAAAGS  VGDENISIVQSKSF+ TQGWDSE
Sbjct: 78  MYDDEMEEVDNKKDFDIEYDTLAAAAAAAAAAAGSEGVGDENISIVQSKSFVSTQGWDSE 137

Query: 61  MIVDHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVTPPDTDVYVVPKVLTPSN 120
           MIVD+RINEEEFH IS +HC FFIRK  DP++DVYDF+EMYVTPPDTDVY +PKVL P  
Sbjct: 138 MIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAP-- 197

Query: 121 ASKDFDLACSFSQSANSDYGCYNVIEPPIDAPRDPLYKSEKEVLKVSPRYVRIEVASIVI 180
                 +   + + A SDYGCYNV EPPIDAPRDPLYKSEKEVLK               
Sbjct: 198 ------MPQKYIRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLK--------------- 257

Query: 181 QSDVFLTKHFKNQRLWDPEFVLDFEKIYVIDSKTKSITRAKVL 221
              VFLTKHF+N+RL DPEFVLDFE+IYVIDSKTKSITRAKVL
Sbjct: 258 ---VFLTKHFRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVL 274

[Close]

BLAST of CsaV3_5G019980 vs. ExPASy TrEMBL
Match: A0A6J1F6A7 (uncharacterized protein LOC111442572 OS=Cucurbita moschata OX=3662 GN=LOC111442572 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 1.5e-74
Identity = 154/223 (69.06%), Postives = 170/223 (76.23%), Query Frame = 0


Query: 1   MDDEEMEEFNSNKDFDIEYDPL---VAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSE 60
           M D+EMEE ++ KDFDIEYD L    AA AAAAGS  VGDENISIVQSKSF+ TQGWDSE
Sbjct: 76  MYDDEMEEVDNKKDFDIEYDTLAAAAAAAAAAAGSEGVGDENISIVQSKSFVSTQGWDSE 135

Query: 61  MIVDHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVTPPDTDVYVVPKVLTPSN 120
           MIVD+RINEEEFH IS +HC FFIRK  DP++DVYDF+EMYVTPPDTDVY +PKVL P  
Sbjct: 136 MIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAP-- 195

Query: 121 ASKDFDLACSFSQSANSDYGCYNVIEPPIDAPRDPLYKSEKEVLKVSPRYVRIEVASIVI 180
                 +   + + A SDYGCYNV EPPIDAPRDPLYKSEKEVLK               
Sbjct: 196 ------MPQKYIRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLK--------------- 255

Query: 181 QSDVFLTKHFKNQRLWDPEFVLDFEKIYVIDSKTKSITRAKVL 221
              VFLTKHF+N+RL DPEFVLDFE+IYVIDSKTKSITRAKVL
Sbjct: 256 ---VFLTKHFRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKVL 272

[Close]

BLAST of CsaV3_5G019980 vs. ExPASy TrEMBL
Match: A0A1Q3D9Q6 (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_32645 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 4.3e-69
Identity = 137/220 (62.27%), Postives = 163/220 (74.09%), Query Frame = 0


Query: 1   MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIV 60
           M++EEMEE ++ KD+D+EYDPL  A A  A +   GDE+I+IV SKSF+FTQGWDSE++V
Sbjct: 71  MNEEEMEEVDNKKDYDVEYDPLANAAATTATASGDGDEDIAIVDSKSFVFTQGWDSEIVV 130

Query: 61  DHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVTPPDTDVYVVPKVLTPSNASK 120
           D+RINEEEFH IS +HC FFIRK  DP++DVYDF+EMY TPPD DVY +PKVL P     
Sbjct: 131 DYRINEEEFHKISLIHCDFFIRKPPDPDNDVYDFREMYFTPPDMDVYAIPKVLAP----- 190

Query: 121 DFDLACSFSQSANSDYGCYNVIEPPIDAPRDPLYKSEKEVLKVSPRYVRIEVASIVIQSD 180
              +   + + A SDYGCYNV EPPIDAPRDPLYKSE EV K                  
Sbjct: 191 ---MPQKYIRCAKSDYGCYNVTEPPIDAPRDPLYKSEYEVTK------------------ 250

Query: 181 VFLTKHFKNQRLWDPEFVLDFEKIYVIDSKTKSITRAKVL 221
           VFLTKH++N+RL DPEFVLDFE+IYVIDSKTKSITRAK+L
Sbjct: 251 VFLTKHYRNRRLGDPEFVLDFEEIYVIDSKTKSITRAKIL 264

[Close]

BLAST of CsaV3_5G019980 vs. TAIR 10
Match: AT1G21600.1 (plastid transcriptionally active 6 )

HSP 1 Score: 266.2 bits (679), Expect = 2.6e-71
Identity = 137/220 (62.27%), Postives = 165/220 (75.00%), Query Frame = 0


Query: 1   MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIV 60
           MDDEE+EE ++ KD+D+EYDPL AAIAAA G GD GD  I+ VQSKSF+ TQGWDS+M+V
Sbjct: 70  MDDEEVEEVDNKKDYDVEYDPLAAAIAAAGGGGD-GD--IAFVQSKSFISTQGWDSDMVV 129

Query: 61  DHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVTPPDTDVYVVPKVLTPSNASK 120
           D+RINE+EFH +S M C FFIRK  DP++DVYDF+EMYVTPPDTD+Y +P+VL P     
Sbjct: 130 DYRINEDEFHKLSLMDCDFFIRKPPDPDNDVYDFREMYVTPPDTDIYSIPRVLAP----- 189

Query: 121 DFDLACSFSQSANSDYGCYNVIEPPIDAPRDPLYKSEKEVLKVSPRYVRIEVASIVIQSD 180
              +   + + A SDYGCYNV EPPIDAPRDPLYKSE+E+                  S 
Sbjct: 190 ---MPQKYIRCAMSDYGCYNVTEPPIDAPRDPLYKSEREI------------------SK 249

Query: 181 VFLTKHFKNQRLWDPEFVLDFEKIYVIDSKTKSITRAKVL 221
           VFLTKH++N+R  DPEFVLD E+IYVIDSKTKSITRA+VL
Sbjct: 250 VFLTKHYRNRRTNDPEFVLDLEEIYVIDSKTKSITRARVL 260

[Close]

BLAST of CsaV3_5G019980 vs. TAIR 10
Match: AT1G21600.2 (plastid transcriptionally active 6 )

HSP 1 Score: 266.2 bits (679), Expect = 2.6e-71
Identity = 137/220 (62.27%), Postives = 165/220 (75.00%), Query Frame = 0


Query: 1   MDDEEMEEFNSNKDFDIEYDPLVAAIAAAAGSGDVGDENISIVQSKSFMFTQGWDSEMIV 60
           MDDEE+EE ++ KD+D+EYDPL AAIAAA G GD GD  I+ VQSKSF+ TQGWDS+M+V
Sbjct: 70  MDDEEVEEVDNKKDYDVEYDPLAAAIAAAGGGGD-GD--IAFVQSKSFISTQGWDSDMVV 129

Query: 61  DHRINEEEFHNISFMHCHFFIRKSSDPNSDVYDFKEMYVTPPDTDVYVVPKVLTPSNASK 120
           D+RINE+EFH +S M C FFIRK  DP++DVYDF+EMYVTPPDTD+Y +P+VL P     
Sbjct: 130 DYRINEDEFHKLSLMDCDFFIRKPPDPDNDVYDFREMYVTPPDTDIYSIPRVLAP----- 189

Query: 121 DFDLACSFSQSANSDYGCYNVIEPPIDAPRDPLYKSEKEVLKVSPRYVRIEVASIVIQSD 180
              +   + + A SDYGCYNV EPPIDAPRDPLYKSE+E+                  S 
Sbjct: 190 ---MPQKYIRCAMSDYGCYNVTEPPIDAPRDPLYKSEREI------------------SK 249

Query: 181 VFLTKHFKNQRLWDPEFVLDFEKIYVIDSKTKSITRAKVL 221
           VFLTKH++N+R  DPEFVLD E+IYVIDSKTKSITRA+VL
Sbjct: 250 VFLTKHYRNRRTNDPEFVLDLEEIYVIDSKTKSITRARVL 260

The following BLAST results are available for this feature:

BLAST of CsaV3_5G019980 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648326.1	2.7e-134	100.00	hypothetical protein Csa_023109, partial [Cucumis sativus]	[more]
XP_031745857.1	8.8e-85	77.13	uncharacterized protein LOC116406303 [Cucumis sativus]	[more]
XP_038896770.1	3.6e-78	71.36	uncharacterized protein LOC120085024 [Benincasa hispida]	[more]
XP_031740569.1	3.6e-78	71.36	uncharacterized protein LOC101213327 [Cucumis sativus] >KGN54809.2 hypothetical ...	[more]
KAA0052214.1	8.0e-78	70.91	uncharacterized protein E6C27_scaffold207G00250 [Cucumis melo var. makuwa] >TYK0...	[more]

BLAST of CsaV3_5G019980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XI19	3.7e-70	62.27	PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic OS=Arabidopsis thalian...	[more]

BLAST of CsaV3_5G019980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UA32	3.9e-78	70.91	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BAM8	3.9e-78	70.91	uncharacterized protein LOC103487613 OS=Cucumis melo OX=3656 GN=LOC103487613 PE=...	[more]
A0A6J1IGR4	1.5e-74	69.06	uncharacterized protein LOC111477076 OS=Cucurbita maxima OX=3661 GN=LOC111477076...	[more]
A0A6J1F6A7	1.5e-74	69.06	uncharacterized protein LOC111442572 OS=Cucurbita moschata OX=3662 GN=LOC1114425...	[more]
A0A1Q3D9Q6	4.3e-69	62.27	Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_32645 PE=4...	[more]

BLAST of CsaV3_5G019980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21600.1	2.6e-71	62.27	plastid transcriptionally active 6	[more]
AT1G21600.2	2.6e-71	62.27	plastid transcriptionally active 6	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35994:SF1	EXPRESSED PROTEIN	coord: 1..220
IPR044710	PLASTID TRANSCRIPTIONALLY ACTIVE protein 6	PANTHER	PTHR35994	EXPRESSED PROTEIN	coord: 1..220

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G019980.1	CsaV3_5G019980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0000427	plastid-encoded plastid RNA polymerase complex