CsaV3_5G018920 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G018920
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	plastid transcriptionally active 6
Location	chr5: 14399803 .. 14401492 (-)
RNA-Seq Expression	CsaV3_5G018920
Synteny	CsaV3_5G018920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGTGGATTATAGGATAAATGAGGAGGAATTTCATAAGATTAGTTTTATGCACTGTGATTTCTTCATTAGGAAGTCGTCGGATCCCAACAGCGATGTTTATGATTTTAGAGAGGTTAGTGGCAAAATTTGCTTAGTTTCATTTCAAACTTTGCTTTATCAGATTCATTTGATAGTTAAAAAAAGTTTTCGTTGATGTGTTTTTTGGTTGTAGATGTATGTTACTCCTCCGGATACTGATGTTTATGCCGTCCCCAAAGTTCTTGCTCCCTCCAATGCCTCAAAAGGTATTATTGTTCTTTCTTTGCATTTATATACATGATAAAATGGTGTAAATTATTATGTTTTAGTCTTGAACTCTAGATTAAAAACCCGTTTCAACCATTTTCATTAGTTTTTAACTAACAATTGAACAGAAACTTAGCCTGTTAGTTTAGCCATTTTCATTAACTTTACATTAACAATAACTAGTGCAATTGGCCGGCATTTATCAAGCCTCTCTAAGTTTTTATTTACTTTTTAAAGTCTTACTACTTGAGCCTTACCACATTTGCCTTTAATCCTCTGCGGTTAATTGTTTACATTATGCTATGTTTTTGTTGTATCCTTTTGTATCTGGAAGCACTTGTCTCTGTTCATCTCCTTTATGAAAAGTTTCAATCATTTTCTATAAACAGATTTCAATTTAGCATGTTCATTTAGCTAGTCGGCAACTGTTTACAGACGGTCATTTAAGTTTTTGTGGAAGAACTGTTGGTAAGTTAACAGTTAATTTGATGAAGAAATCTGAGACTAAAACTGACTTATTGAAGGTTAAGGGACTTAAACACAATAATTAAAAGATAATAGAACAATATGGAACAAACATCATAGTTCAAGGACCAAAATAAGATTTTAAGGAATTTTGTTTATATCATAGTTCAAGGACCAAAATAAGATTTTAAGGAATTTCAGCAGTGTATGATCTTACTTTTCTTCACAACTGCAGTATATTAGATGTGCTTAGAGTGATTATGGATGCTACAATGTCACAGAACCATCTATTGATGCACTTAGAGATCCATTATACAAGTCCGAAAATGAGGTTCTTAAGGTAAGGTTGGACTTAAGAATTTGATGATTGTTCACTCTATTTTTCTATTTCTAGTGAAAGTGATGATAATTTAATGGACTATTCGATTTCTTTGTAAATCCGAGTAAAGGTTTCGCTGCGATACGTTAGAATAGAAGTAACTAGCATATACATACAAAGTGACGTTCATTGACTCAACGACGTTTGAAATTTAAGAATATTATGCATGTGATGGTCCTCTCTTAAGGATGGGAATGTGAACAAAAGATATAAGAATGTGCAAACAATTCATTTATCTTTTGCAGGTTTTCTTGACGAAGAACTTTAGAAATTAAAGGCTGTGGGACCCTGAATTTGTCTTAGATTTTGAGAAAATATATGTAATTGATTCAAAAACCAACTCAATCACCAGGCAAAAGTCCTGGTAAGACTTTTTTTTCTTGGCTTTTGCACTGTTTCAGTAATAAGTGAAGTTCTAAACTTCAAGTCGAATTGAAGATTTCAAGCTGCTTCTTCTCTGTTAAAAGGGTTTAAACTACTTCCTTTTGCTCTAACACAGGTCACAGTTCCAGGAGGAAGAGATAGGAACAGAAGAAGCGACTTGCTTGTAGTTTGA

mRNA sequence

ATGATTGTGGATTATAGGATAAATGAGGAGGAATTTCATAAGATTAGTTTTATGCACTGTGATTTCTTCATTAGGAAGTCGTCGGATCCCAACAGCGATGTTTATGATTTTAGAGAGATGTATGTTACTCCTCCGGATACTGATGTTTATGCCGTCCCCAAAGTTCTTGCTCCCTCCAATGCCTCAAAAGAACCATCTATTGATGCACTTAGAGATCCATTATACAAGTCCGAAAATGAGGTTCTTAAGGTCACAGTTCCAGGAGGAAGAGATAGGAACAGAAGAAGCGACTTGCTTGTAGTTTGA

Coding sequence (CDS)

ATGATTGTGGATTATAGGATAAATGAGGAGGAATTTCATAAGATTAGTTTTATGCACTGTGATTTCTTCATTAGGAAGTCGTCGGATCCCAACAGCGATGTTTATGATTTTAGAGAGATGTATGTTACTCCTCCGGATACTGATGTTTATGCCGTCCCCAAAGTTCTTGCTCCCTCCAATGCCTCAAAAGAACCATCTATTGATGCACTTAGAGATCCATTATACAAGTCCGAAAATGAGGTTCTTAAGGTCACAGTTCCAGGAGGAAGAGATAGGAACAGAAGAAGCGACTTGCTTGTAGTTTGA

Protein sequence

MIVDYRINEEEFHKISFMHCDFFIRKSSDPNSDVYDFREMYVTPPDTDVYAVPKVLAPSNASKEPSIDALRDPLYKSENEVLKVTVPGGRDRNRRSDLLVV*

Homology

[Close]

BLAST of CsaV3_5G018920 vs. NCBI nr
Match: KAE8648319.1 (hypothetical protein Csa_004673 [Cucumis sativus])

HSP 1 Score: 206.5 bits (524), Expect = 1.1e-49
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MIVDYRINEEEFHKISFMHCDFFIRKSSDPNSDVYDFREMYVTPPDTDVYAVPKVLAPSN 60
           MIVDYRINEEEFHKISFMHCDFFIRKSSDPNSDVYDFREMYVTPPDTDVYAVPKVLAPSN
Sbjct: 1   MIVDYRINEEEFHKISFMHCDFFIRKSSDPNSDVYDFREMYVTPPDTDVYAVPKVLAPSN 60

Query: 61  ASKEPSIDALRDPLYKSENEVLKVTVPGGRDRNRRSDLLVV 102
           ASKEPSIDALRDPLYKSENEVLKVTVPGGRDRNRRSDLLVV
Sbjct: 61  ASKEPSIDALRDPLYKSENEVLKVTVPGGRDRNRRSDLLVV 101

[Close]

BLAST of CsaV3_5G018920 vs. NCBI nr
Match: KAE8637331.1 (hypothetical protein CSA_000002 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 9.9e-38
Identity = 93/141 (65.96%), Postives = 93/141 (65.96%), Query Frame = 0


Query: 1   MIVDYRINEEEFHKISFMHCDFFIRKSSDPNSDVYDFREMYVTPPDTDVYAVPKVLAPSN 60
           MIVDYRINEEEFHKISFMHC FFIRKSSD NSDVYDFREMYVTPPDTDVY VPKVLAPSN
Sbjct: 58  MIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVTPPDTDVYVVPKVLAPSN 117

Query: 61  ASKEPSIDALRDPLYKSENEVLKV------------------------------------ 102
           ASKEP IDA RDPLYKSE EVLKV                                    
Sbjct: 118 ASKEPPIDAPRDPLYKSEKEVLKVFLTKHFKIEGCGPEFVLDFEKIYVIDSKPSQSLGKS 177

[Close]

BLAST of CsaV3_5G018920 vs. NCBI nr
Match: XP_031745328.1 (uncharacterized protein LOC116401683 [Cucumis sativus])

HSP 1 Score: 163.7 bits (413), Expect = 8.4e-37
Identity = 91/139 (65.47%), Postives = 91/139 (65.47%), Query Frame = 0


Query: 1   MIVDYRINEEEFHKISFMHCDFFIRKSSDPNSDVYDFREMYVTPPDTDVYAVPKVLAPSN 60
           MIVDYRINEEEFHKISFMHC FFIRKSSD NSDVYDFREMYVTPPDTDVY VPKVLAPSN
Sbjct: 58  MIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVTPPDTDVYVVPKVLAPSN 117

Query: 61  ASKEPSIDALRDPLYKSENEVLKV------------------------------------ 100
           ASKEP IDA RDPLYKSE EVLKV                                    
Sbjct: 118 ASKEPPIDAPRDPLYKSEKEVLKVFLTKHFKIEGCGPEFVLDFEKIYVIDSKPSQSLGKS 177

[Close]

BLAST of CsaV3_5G018920 vs. NCBI nr
Match: XP_031745857.1 (uncharacterized protein LOC116406303 [Cucumis sativus])

HSP 1 Score: 158.3 bits (399), Expect = 3.5e-35
Identity = 78/84 (92.86%), Postives = 78/84 (92.86%), Query Frame = 0


Query: 1   MIVDYRINEEEFHKISFMHCDFFIRKSSDPNSDVYDFREMYVTPPDTDVYAVPKVLAPSN 60
           MIVDYRINEEEFHKISFMHC FFIRKSSD NSDVYDFREMYVTPPDTDVY VPKVLAPSN
Sbjct: 58  MIVDYRINEEEFHKISFMHCHFFIRKSSDSNSDVYDFREMYVTPPDTDVYVVPKVLAPSN 117

Query: 61  ASKEPSIDALRDPLYKSENEVLKV 85
           ASKEP IDA RDPLYKSE EVLKV
Sbjct: 118 ASKEPPIDAPRDPLYKSEKEVLKV 141

[Close]

BLAST of CsaV3_5G018920 vs. NCBI nr
Match: XP_030937036.1 (uncharacterized protein LOC115962270 isoform X2 [Quercus lobata])

HSP 1 Score: 158.3 bits (399), Expect = 3.5e-35
Identity = 77/115 (66.96%), Postives = 89/115 (77.39%), Query Frame = 0


Query: 1   MIVDYRINEEEFHKISFMHCDFFIRKSSDPNSDVYDFREMYVTPPDTDVYAVPKVLAPSN 60
           M+VDYRINE+EFHKIS +HCDFFIRK  DP++DVYDFREMYVTPPDTDVYA+PKVLAP  
Sbjct: 125 MVVDYRINEDEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMP 184

Query: 61  AS--------------KEPSIDALRDPLYKSENEVLKVTVPGGRDRNRRSDLLVV 102
                            EP IDA RDPLYK+E E+ KVTVPGGR+R+R+SDLLV+
Sbjct: 185 QKYIRCAMSDYGCYNVTEPPIDAPRDPLYKTEREIFKVTVPGGRNRDRKSDLLVI 239

[Close]

BLAST of CsaV3_5G018920 vs. ExPASy Swiss-Prot
Match: Q9XI19 (PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PTAC6 PE=1 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 7.9e-30
Identity = 73/155 (47.10%), Postives = 86/155 (55.48%), Query Frame = 0


Query: 1   MIVDYRINEEEFHKISFMHCDFFIRKSSDPNSDVYDFREMYVTPPDTDVYAVPKVLAPSN 60
           M+VDYRINE+EFHK+S M CDFFIRK  DP++DVYDFREMYVTPPDTD+Y++P+VLAP  
Sbjct: 124 MVVDYRINEDEFHKLSLMDCDFFIRKPPDPDNDVYDFREMYVTPPDTDIYSIPRVLAPMP 183

Query: 61  AS--------------KEPSIDALRDPLYKSENEVLK----------------------- 102
                            EP IDA RDPLYKSE E+ K                       
Sbjct: 184 QKYIRCAMSDYGCYNVTEPPIDAPRDPLYKSEREISKVFLTKHYRNRRTNDPEFVLDLEE 243

[Close]

BLAST of CsaV3_5G018920 vs. ExPASy TrEMBL
Match: A0A4D9BFC7 (Uncharacterized protein OS=Salvia splendens OX=180675 GN=Saspl_033614 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.6e-33
Identity = 77/114 (67.54%), Postives = 85/114 (74.56%), Query Frame = 0


Query: 2   IVDYRINEEEFHKISFMHCDFFIRKSSDPNSDVYDFREMYVTPPDTDVYAVPKVLAPSNA 61
           IVDYRINE+EFHKI  + CDFFIRK  DP++DVYDFREMYVTPPDTDVYA+PKVLAP   
Sbjct: 120 IVDYRINEDEFHKICLLDCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMPE 179

Query: 62  S--------------KEPSIDALRDPLYKSENEVLKVTVPGGRDRNRRSDLLVV 102
                           EP IDA RDP+YKSE EVLKVTVP GRDR+R+ DLLVV
Sbjct: 180 KYIRCAQSDYGCYNVTEPPIDAPRDPMYKSEREVLKVTVPDGRDRDRKKDLLVV 233

[Close]

BLAST of CsaV3_5G018920 vs. ExPASy TrEMBL
Match: A0A0R0KCM0 (Uncharacterized protein OS=Glycine max OX=3847 GN=100782614 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.8e-32
Identity = 73/114 (64.04%), Postives = 86/114 (75.44%), Query Frame = 0


Query: 2   IVDYRINEEEFHKISFMHCDFFIRKSSDPNSDVYDFREMYVTPPDTDVYAVPKVLAP--- 61
           ++DY+INE+EFHKI  + CDFFIRK  DP++DVYDFREMYVTPPDTDVY++PKVLAP   
Sbjct: 125 VLDYKINEDEFHKICLVDCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYSIPKVLAPMPQ 184

Query: 62  -----------SNASKEPSIDALRDPLYKSENEVLKVTVPGGRDRNRRSDLLVV 102
                      S    EP IDA RDPLYK+E E+LKVT PGGR R+RRSDLLV+
Sbjct: 185 KYIRCAQSDYGSYNVTEPPIDAPRDPLYKTEREILKVTAPGGRTRDRRSDLLVI 238

[Close]

BLAST of CsaV3_5G018920 vs. ExPASy TrEMBL
Match: A0A5A7UA32 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00090 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 5.1e-32
Identity = 85/155 (54.84%), Postives = 90/155 (58.06%), Query Frame = 0


Query: 1   MIVDYRINEEEFHKISFMHCDFFIRKSSDPNSDVYDFREMYVTPPDTDVYAVPKVLAPSN 60
           MIVDYRINEEEFHKIS +HCDFFIRK  DP++DVYDFREMYVTPPDTDVYA+PKVLAP  
Sbjct: 133 MIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMP 192

Query: 61  AS--------------KEPSIDALRDPLYKSENEVLK----------------------- 102
                            EP IDA RDPLYKSE EVLK                       
Sbjct: 193 QKYIRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLKVFLTKHFRNRRLRDPEFVLDFEE 252

[Close]

BLAST of CsaV3_5G018920 vs. ExPASy TrEMBL
Match: A0A1S3BAM8 (uncharacterized protein LOC103487613 OS=Cucumis melo OX=3656 GN=LOC103487613 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 5.1e-32
Identity = 85/155 (54.84%), Postives = 90/155 (58.06%), Query Frame = 0


Query: 1   MIVDYRINEEEFHKISFMHCDFFIRKSSDPNSDVYDFREMYVTPPDTDVYAVPKVLAPSN 60
           MIVDYRINEEEFHKIS +HCDFFIRK  DP++DVYDFREMYVTPPDTDVYA+PKVLAP  
Sbjct: 133 MIVDYRINEEEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMP 192

Query: 61  AS--------------KEPSIDALRDPLYKSENEVLK----------------------- 102
                            EP IDA RDPLYKSE EVLK                       
Sbjct: 193 QKYIRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLKVFLTKHFRNRRLRDPEFVLDFEE 252

[Close]

BLAST of CsaV3_5G018920 vs. ExPASy TrEMBL
Match: A0A6J1CDU8 (uncharacterized protein LOC111010309 OS=Momordica charantia OX=3673 GN=LOC111010309 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.1e-31
Identity = 84/155 (54.19%), Postives = 90/155 (58.06%), Query Frame = 0


Query: 1   MIVDYRINEEEFHKISFMHCDFFIRKSSDPNSDVYDFREMYVTPPDTDVYAVPKVLAPSN 60
           MIVDYRINE+EFHKIS +HCDFFIRK  DP++DVYDFREMYVTPPDTDVYA+PKVLAP  
Sbjct: 1   MIVDYRINEDEFHKISLLHCDFFIRKPPDPDNDVYDFREMYVTPPDTDVYAIPKVLAPMP 60

Query: 61  AS--------------KEPSIDALRDPLYKSENEVLK----------------------- 102
                            EP IDA RDPLYKSE EVLK                       
Sbjct: 61  QKYIRCAQSDYGCYNVTEPPIDAPRDPLYKSEKEVLKVFLTKHFRNRRLRDPEFVLDFEE 120

[Close]

BLAST of CsaV3_5G018920 vs. TAIR 10
Match: AT1G21600.1 (plastid transcriptionally active 6 )

HSP 1 Score: 131.0 bits (328), Expect = 5.6e-31
Identity = 73/155 (47.10%), Postives = 86/155 (55.48%), Query Frame = 0


Query: 1   MIVDYRINEEEFHKISFMHCDFFIRKSSDPNSDVYDFREMYVTPPDTDVYAVPKVLAPSN 60
           M+VDYRINE+EFHK+S M CDFFIRK  DP++DVYDFREMYVTPPDTD+Y++P+VLAP  
Sbjct: 124 MVVDYRINEDEFHKLSLMDCDFFIRKPPDPDNDVYDFREMYVTPPDTDIYSIPRVLAPMP 183

Query: 61  AS--------------KEPSIDALRDPLYKSENEVLK----------------------- 102
                            EP IDA RDPLYKSE E+ K                       
Sbjct: 184 QKYIRCAMSDYGCYNVTEPPIDAPRDPLYKSEREISKVFLTKHYRNRRTNDPEFVLDLEE 243

[Close]

BLAST of CsaV3_5G018920 vs. TAIR 10
Match: AT1G21600.2 (plastid transcriptionally active 6 )

HSP 1 Score: 131.0 bits (328), Expect = 5.6e-31
Identity = 73/155 (47.10%), Postives = 86/155 (55.48%), Query Frame = 0


Query: 1   MIVDYRINEEEFHKISFMHCDFFIRKSSDPNSDVYDFREMYVTPPDTDVYAVPKVLAPSN 60
           M+VDYRINE+EFHK+S M CDFFIRK  DP++DVYDFREMYVTPPDTD+Y++P+VLAP  
Sbjct: 124 MVVDYRINEDEFHKLSLMDCDFFIRKPPDPDNDVYDFREMYVTPPDTDIYSIPRVLAPMP 183

Query: 61  AS--------------KEPSIDALRDPLYKSENEVLK----------------------- 102
                            EP IDA RDPLYKSE E+ K                       
Sbjct: 184 QKYIRCAMSDYGCYNVTEPPIDAPRDPLYKSEREISKVFLTKHYRNRRTNDPEFVLDLEE 243

The following BLAST results are available for this feature:

BLAST of CsaV3_5G018920 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648319.1	1.1e-49	100.00	hypothetical protein Csa_004673 [Cucumis sativus]	[more]
KAE8637331.1	9.9e-38	65.96	hypothetical protein CSA_000002 [Cucumis sativus]	[more]
XP_031745328.1	8.4e-37	65.47	uncharacterized protein LOC116401683 [Cucumis sativus]	[more]
XP_031745857.1	3.5e-35	92.86	uncharacterized protein LOC116406303 [Cucumis sativus]	[more]
XP_030937036.1	3.5e-35	66.96	uncharacterized protein LOC115962270 isoform X2 [Quercus lobata]	[more]

BLAST of CsaV3_5G018920 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XI19	7.9e-30	47.10	PLASTID TRANSCRIPTIONALLY ACTIVE protein 6, chloroplastic OS=Arabidopsis thalian...	[more]

BLAST of CsaV3_5G018920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4D9BFC7	1.6e-33	67.54	Uncharacterized protein OS=Salvia splendens OX=180675 GN=Saspl_033614 PE=4 SV=1	[more]
A0A0R0KCM0	1.8e-32	64.04	Uncharacterized protein OS=Glycine max OX=3847 GN=100782614 PE=4 SV=1	[more]
A0A5A7UA32	5.1e-32	54.84	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BAM8	5.1e-32	54.84	uncharacterized protein LOC103487613 OS=Cucumis melo OX=3656 GN=LOC103487613 PE=...	[more]
A0A6J1CDU8	1.1e-31	54.19	uncharacterized protein LOC111010309 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]

BLAST of CsaV3_5G018920 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21600.1	5.6e-31	47.10	plastid transcriptionally active 6	[more]
AT1G21600.2	5.6e-31	47.10	plastid transcriptionally active 6	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35994:SF1	EXPRESSED PROTEIN	coord: 1..84
IPR044710	PLASTID TRANSCRIPTIONALLY ACTIVE protein 6	PANTHER	PTHR35994	EXPRESSED PROTEIN	coord: 1..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G018920.1	CsaV3_5G018920.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0000427	plastid-encoded plastid RNA polymerase complex