CsaV3_5G017440 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G017440
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5: 13998857 .. 14002304 (-)
RNA-Seq ExpressionCsaV3_5G017440
SyntenyCsaV3_5G017440
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAGCCACAATCTTTCTCATCCTCTTAGCTATGAGATCCATGTATGTAACTGTTGAAATTAATAGCCTCTTATATGAGATTAAAGTGATTACTATGCATGATGCATTCCTCCTGCATGTCTTCTGTCAACTAATTTAGCATGCTGGTTTCCAGGTCCAAAGAGGATTCCAGTGGCACAATATATGGATTTACATGGAATCATTCTACTGAAAATTCCTATCTGTTATTTTGCTGATGGAAGCATATTCATTCGAGTTTGACGCTCAGCTGGCTTACAATGAGCAAGGTGTTAACCTGACTCTTCATGCTTATTTATATTTGAAATTTGATATTCAGCACCGTAAGCATATGGTCACCTATGGAATGGGTGAAATCATTAAGAAAAGCTGCCTCTTCTCGTGGGACTGAAGGTTCTAACATGATCCATTTTTTCTCTGCTGTTCTTTCTTCCCTTGCGGGGGTGGTCTGTTCTTTCTTCCCTTGCGGGGTGGTCTATTCTTTCCTCCATTGAGGACTGTAGGTTCTTATGGAGATTATTGAAAACCTTAAACCTGATCCTACAGAGACTCTCTGAAATGCATCCTTGGTTTTTTCCAATTGTTTGTGAGCATTTTCTTATTTGGAGTTTTCATGAATGGTTATGATTTTTGCCAACAGATCTTTCTAGTGTGGCAAAATTCCTATGAAACTCAGAATCTTCTTCTGATGATCTCCTACTCTCAATTCTACGTATACACCAAGTCCACCAATGACATGATTCGTTGGGAGAAAACCTCAGTTATCTTCTTCCTTAAATATTTTCTCACAGATGCAGGACCTCTCTCTTCCCTTGTTTGGTTCCTTAGATTGGTTGGCTAAGAGCATGAATGTAAATGGGGTAGGTTTTTGGTCAACTATTTGAAACTTACATGTCAACACAGGATAAAATTGAAAAGCAAAACTACAACAAAATCTTTAACCAAACAGACAAAGCCAATGAACCAAAATCCCCATCTGAAGTCGAGAACCTAACTTCAGGGTTCAGGCTAGACAATCAAATCTATGAAACATTTCACAAATTCAGAATTGAAGTATTTCTGGTATTGAAACTGTACAGAATTGAATAGATTTGGCACCAGTACCATGGGGCCTTGGTCTGTGATTGGGTGGACGTGGACTATCATACAGCTTTTCATCCGTTGGATCATGAGAAAAATACGAAGGTCTTTCAAGTATGTGTAGAGGGATTCTTGTTTATGATTATAGGGCCCCTTTTGGTAATGGTAGTAGTATTCTTGTATCCTGTTGTAGTTAGAATTCTATTGAATTTTTATAGCCGTTCTACTACTAATATGCTTAGCAACTGGTCAATTTTTTTTTAATTTCTAGTTGGTTGGGGGGCATGAAAGGTGCTTTTATCTCCTCTTTCTTACTTGAGTGAAAACTCGGTGGCTTTTTTTTCCCCTCAAATGATAGTTTTCTTCACGAATAAGGGGACACGTCTCTGTGGTATTTATATTCGAAAATTTGTATATATCTTGAAGTAGGGTATTTTATTTATAGGGTATTTTATTTATCTTTCATAAACACTATAATTACTCTTATGTGGTTGTTCAGTTGTTCCTATTTCTATTTCTATTTCTAGACATAGTTTTTTACAGCATTTGTGGGAGTGAATTCTACTTATCACTTACGAAGGTTACATAGGCTTATAGGAACCAAGGTAGTATGAGATGTCTTTCTTCCACGTTGGTTAAAATGGGATTACCAATGTGGTACTTAAGTAACTTGGTTCTCCCACCCCAACAACTGACTTATGGGGTATGGTTCTCCAAGGTGCTTAAGTTCCTAACAATGACATTAGAGCCAATTCTCGACGTTTTGGAGTGGAACCAGTGGAGGGTTCTGATCGGGTGTGGTTGAGTGAAATACCATTGTAGTAGCCGGTAGGTTGACTTTTCGAGGATAGGATATTGTTCAGAACCAAGGTAGTACGAGATGCCTTTGTCCCACATTGGTTAAAATGGGATGACCAATGTGGTACTTAAAGTGGTTGGGCTCTCTTATCCCAAATACTGGCTTTTAGGGTGTGGTTCTTCTAGGTGCTTAAGTACCTAACACATCAGTTAGGCATTTCGAAGCTGCTTCCCCTTTTCAATTTGTAGATCGAACTAATTGTCTGTGCAATCTACAGTTCTGTACCGTGATTTTTGGCACATCCATTCATTTAAGTTGAAAAAAGCAACAACTGAGATCTGCCACAATACCATACTAATGCTTGACTTACTGATGTCTTTGCAAAAGCTTCAGAGTTCGGTTACTGTTTCATAGGGAACAAAACACTGTATAAGCTTGGGTACATAAAGAAGTGTACTTCATTGTTCTGATCATTTGAATATTTGTACTTATTATGTCATGTATACACCTGTTTTACTGTTAAAGTCACGTGATGAACGATTTTCTAGCATATGTTTCTTTGAATTTCTCAGGTCGTTGATTTGGATGAGAGCTTATTTTGGCACATCAATTGTAGAAGTTATTCGTGTTGATGGCTTCCATATTGGTGTTGGAAGGAGCAGGAAGCTGCAAGCTGCACAATAAAGATGTGGCAGAATGAAGCCTGAAAGGTTAGGTGATATGCACTGATTCTCGATGTTAAAAAATCTCCACATTCCACATGATTTTAAGAAAAAATCAGAAGAGAAGCATGGAGAATAGTGTGTTACTTTCCTAAAACTGTAAACAAGAAACGGGAAGGTTACGACATAAATAACACTCTTGTATAATGTGTTGTTTATTGGTTGCATAAAACCCTAAACCAAATAACTTCAATTTTAGAAAAATCGCAGGGTTACATATGTACTGTTGCTACGTTTTGATCTTGTGGATTGCAGTGTAATGTCCATAGGCTAGAAAAACAACTAGATTCACTTTTGTTGGTGTACACTGACGTGTAATGAGAATGAGTTGAACTGTAATAAAAACTCAATGGTGGTGCCTATTTTTTTAAGTAATGGAAATGAAATTTGAAAGAACATCAAAATACCCTTTTATATTTCTAATTGATCTTGCGATCTATTCATTTGATATCCAAACCATAAAATGTAGGATCTCAAAAAAAGTAATAGTAATTGTTTAAGATTTGAAATTTAATTCAAATTTTGACGTTGTAGATTTATGTTTTCAAAATAATCTTTTTATTTGAAAAAAAAAGTGATACAAATATTTCTAATAGATATTAATCTATACAACGAACAATATATTGTTTTTGGTTTTAAGAAAATGATGATAGTCTTGCTCTCTAGTCTAAGAATGAGAGGTATTCAATGTGTTTGGTCTTGGTTTTAGATTTTTTTATTGTATGTTTTAATCCTACTCTTTAAAGGTTTGTAGCCCTCGTAATGTTTTTTCCCAAAAGAGACATCCCCAGTCAAGATTGTTGAAGTGTTCCAAATCATCCACATAG

mRNA sequence

ATGTTAGCCACAATCTTTCTCATCCTCTTAGCTATGAGATCCATCACCGTAAGCATATGGTCACCTATGGAATGGGTGAAATCATTAAGAAAAGCTGCCTCTTCTCGTGGGACTGAAGGTTCTAACATGATCCATTTTTTCTCTGCTGTTCTTTCTTCCCTTGCGGGGGTGATGCAGGACCTCTCTCTTCCCTTGTTTGGTTCCTTAGATTGGTTGGCTAAGAGCATGAATGATAAAATTGAAAAGCAAAACTACAACAAAATCTTTAACCAAACAGACAAAGCCAATGAACCAAAATCCCCATCTGAAGTCGAGAACCTAACTTCAGGGTTCAGGCTAGACAATCAAATCTATGAAACATTTCACAAATTCAGAATTGAAGTATTTCTGGTTTGTAGCCCTCGTAATGTTTTTTCCCAAAAGAGACATCCCCAGTCAAGATTGTTGAAGTGTTCCAAATCATCCACATAG

Coding sequence (CDS)

ATGTTAGCCACAATCTTTCTCATCCTCTTAGCTATGAGATCCATCACCGTAAGCATATGGTCACCTATGGAATGGGTGAAATCATTAAGAAAAGCTGCCTCTTCTCGTGGGACTGAAGGTTCTAACATGATCCATTTTTTCTCTGCTGTTCTTTCTTCCCTTGCGGGGGTGATGCAGGACCTCTCTCTTCCCTTGTTTGGTTCCTTAGATTGGTTGGCTAAGAGCATGAATGATAAAATTGAAAAGCAAAACTACAACAAAATCTTTAACCAAACAGACAAAGCCAATGAACCAAAATCCCCATCTGAAGTCGAGAACCTAACTTCAGGGTTCAGGCTAGACAATCAAATCTATGAAACATTTCACAAATTCAGAATTGAAGTATTTCTGGTTTGTAGCCCTCGTAATGTTTTTTCCCAAAAGAGACATCCCCAGTCAAGATTGTTGAAGTGTTCCAAATCATCCACATAG

Protein sequence

MLATIFLILLAMRSITVSIWSPMEWVKSLRKAASSRGTEGSNMIHFFSAVLSSLAGVMQDLSLPLFGSLDWLAKSMNDKIEKQNYNKIFNQTDKANEPKSPSEVENLTSGFRLDNQIYETFHKFRIEVFLVCSPRNVFSQKRHPQSRLLKCSKSST*
Homology
[Close]
BLAST of CsaV3_5G017440 vs. NCBI nr
Match: KAE8648297.1 (hypothetical protein Csa_017838 [Cucumis sativus])

HSP 1 Score: 303.5 bits (776), Expect = 1.0e-78
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0 

Query: 1   MLATIFLILLAMRSITVSIWSPMEWVKSLRKAASSRGTEGSNMIHFFSAVLSSLAGVMQD 60
           MLATIFLILLAMRSITVSIWSPMEWVKSLRKAASSRGTEGSNMIHFFSAVLSSLAGVMQD
Sbjct: 1   MLATIFLILLAMRSITVSIWSPMEWVKSLRKAASSRGTEGSNMIHFFSAVLSSLAGVMQD 60

Query: 61  LSLPLFGSLDWLAKSMNDKIEKQNYNKIFNQTDKANEPKSPSEVENLTSGFRLDNQIYET 120
           LSLPLFGSLDWLAKSMNDKIEKQNYNKIFNQTDKANEPKSPSEVENLTSGFRLDNQIYET
Sbjct: 61  LSLPLFGSLDWLAKSMNDKIEKQNYNKIFNQTDKANEPKSPSEVENLTSGFRLDNQIYET 120

Query: 121 FHKFRIEVFLVCSPRNVFSQKRHPQSRLLKCSKSST 157
           FHKFRIEVFLVCSPRNVFSQKRHPQSRLLKCSKSST
Sbjct: 121 FHKFRIEVFLVCSPRNVFSQKRHPQSRLLKCSKSST 156

The following BLAST results are available for this feature:
BLAST of CsaV3_5G017440 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8648297.11.0e-78100.00hypothetical protein Csa_017838 [Cucumis sativus][more]
BLAST of CsaV3_5G017440 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G017440 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G017440 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G017440.1CsaV3_5G017440.1mRNA