CsaV3_5G017180 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G017180
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5: 13771784 .. 13772034 (-)
RNA-Seq ExpressionCsaV3_5G017180
SyntenyCsaV3_5G017180
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ACAACGGAGGAGAAGGGATCGGCGGCGGCTGGCTGAAAACAGAGGAGAAAGGAGAGGAATGGGCGGCGGCTGGCTTGGACGGCGGTTGTGAGCGGAGGACGTGGCGGTTACTGGTTCACGCGGCGGCTTTGACTTCGACGGAGACAGAGCAGGGACGCGGAAACGGTTGCAGCGGCGGTGAGGCTGGGCACGGCGACGCAGATCTGGACCGGGCAGCGGCGGAAGAGCAACGGCGCGGTCTTGCTTCGTGA

mRNA sequence

AACGGAGGAGAAGGGATCGGCGGCGGCTGGCTGAAAACAGAGGAGAAAGGAGAGGAATGGGCGGCGGCTGGCTTGGACGGCGGTTGTGAGCGGAGGACGTGGCGGTTACTGGTTCACGCGGCGGCTTTGACTTCGACGGAGACAGAGCAGGGACGCGGAAACGGTTGCAGCGGCGGTGAGGCTGGGCACGGCGACGCAGATCTGGACCGGGCAGCGGCGGAAGAGCAACGGCGCGGTCTTGCTTCGTG

Coding sequence (CDS)

AACGGAGGAGAAGGGATCGGCGGCGGCTGGCTGAAAACAGAGGAGAAAGGAGAGGAATGGGCGGCGGCTGGCTTGGACGGCGGTTGTGAGCGGAGGACGTGGCGGTTACTGGTTCACGCGGCGGCTTTGACTTCGACGGAGACAGAGCAGGGACGCGGAAACGGTTGCAGCGGCGGTGAGGCTGGGCACGGCGACGCAGATCTGGACCGGGCAGCGGCGGAAGAGCAACGGCGCGGTCTTGCTTCGTG

Protein sequence

NGGEGIGGGWLKTEEKGEEWAAAGLDGGCERRTWRLLVHAAALTSTETEQGRGNGCSGGEAGHGDADLDRAAAEEQRRGLASX
Homology
BLAST of CsaV3_5G017180 vs. NCBI nr
Match: KAE8648283.1 (hypothetical protein Csa_023875, partial [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 2.3e-37
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0

Query: 1  NGGEGIGGGWLKTEEKGEEWAAAGLDGGCERRTWRLLVHAAALTSTETEQGRGNGCSGGE 60
          NGGEGIGGGWLKTEEKGEEWAAAGLDGGCERRTWRLLVHAAALTSTETEQGRGNGCSGGE
Sbjct: 1  NGGEGIGGGWLKTEEKGEEWAAAGLDGGCERRTWRLLVHAAALTSTETEQGRGNGCSGGE 60

Query: 61 AGHGDADLDRAAAEEQRRGLAS 83
          AGHGDADLDRAAAEEQRRGLAS
Sbjct: 61 AGHGDADLDRAAAEEQRRGLAS 82

BLAST of CsaV3_5G017180 vs. NCBI nr
Match: KAE8637257.1 (hypothetical protein CSA_004647, partial [Cucumis sativus] >KAE8649441.1 hypothetical protein Csa_018905, partial [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 2.5e-07
Identity = 38/60 (63.33%), Postives = 41/60 (68.33%), Query Frame = 0

Query: 22 AAGLDGGCERRTWRLLVHAAALTSTETEQGRGNGCSGGEAGHGDADLDRAAAEEQRRGLA 81
          AAGLDGGCERRTWRLL+H  A       + R       EA HGDA+LDRAAAE QRRGLA
Sbjct: 17 AAGLDGGCERRTWRLLLHTVARLRRRQNKTR-KRLQRREAVHGDANLDRAAAEGQRRGLA 75

BLAST of CsaV3_5G017180 vs. NCBI nr
Match: KAE8637196.1 (hypothetical protein CSA_019087, partial [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 9.6e-07
Identity = 37/62 (59.68%), Postives = 42/62 (67.74%), Query Frame = 0

Query: 13 TEEKGEEWAAAGLDGGCERRTWRLLVHAAALTSTETE-------QGRGNGCSGGEAGHGD 68
          TE+KG   AAAGLDGGCERRTWRLLVH AA  ST+TE       + + NGCSGG +   D
Sbjct: 2  TEKKGS--AAAGLDGGCERRTWRLLVHTAARASTKTEPAETAGQRRKSNGCSGGRSCGTD 61

BLAST of CsaV3_5G017180 vs. NCBI nr
Match: KAE8652767.1 (hypothetical protein Csa_022880, partial [Cucumis sativus])

HSP 1 Score: 55.5 bits (132), Expect = 2.6e-04
Identity = 30/43 (69.77%), Postives = 31/43 (72.09%), Query Frame = 0

Query: 13 TEEKGEEWAAAGLDGGCERRTWRLLVHAAALTSTETEQGRGNG 56
          TEEKG   AAAGLDGGCE RTWRLLVH AA  ST+TE     G
Sbjct: 21 TEEKGS--AAAGLDGGCEWRTWRLLVHMAARASTKTEPAETAG 61

BLAST of CsaV3_5G017180 vs. NCBI nr
Match: KGN64826.2 (hypothetical protein Csa_022831 [Cucumis sativus])

HSP 1 Score: 55.5 bits (132), Expect = 2.6e-04
Identity = 30/43 (69.77%), Postives = 31/43 (72.09%), Query Frame = 0

Query: 13 TEEKGEEWAAAGLDGGCERRTWRLLVHAAALTSTETEQGRGNG 56
          TEEKG   AAAGLDGGCE RTWRLLVH AA  ST+TE     G
Sbjct: 21 TEEKGS--AAAGLDGGCEWRTWRLLVHMAARASTKTEPAETAG 61

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8648283.12.3e-37100.00hypothetical protein Csa_023875, partial [Cucumis sativus][more]
KAE8637257.12.5e-0763.33hypothetical protein CSA_004647, partial [Cucumis sativus] >KAE8649441.1 hypothe... [more]
KAE8637196.19.6e-0759.68hypothetical protein CSA_019087, partial [Cucumis sativus][more]
KAE8652767.12.6e-0469.77hypothetical protein Csa_022880, partial [Cucumis sativus][more]
KGN64826.22.6e-0469.77hypothetical protein Csa_022831 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..82
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..82

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G017180.1CsaV3_5G017180.1mRNA