CsaV3_5G015480 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G015480
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr5: 12869527 .. 12871668 (+)
RNA-Seq Expression	CsaV3_5G015480
Synteny	CsaV3_5G015480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGCGGCGGTTGCTGGAGTTGGTGGCCCGAAGTTTGCTAGCGGAGTTGTTAGAAATGACACCCAATGGCCAGCCGACAATGGTCATCAGGATTGGTGTTCGGAGTTGGTCGACAAATTTTTTAGATTGAGTTAAAATAAAAAAGTAATTCATGGGATTGAATAGATTTTACTATTCAAACCCATGGAAAAGAGTGTAGGATGTGAAACTCACACCTAAGTTAAGAATTAAAAGAAATTTTTTTGACTAAGTGTTTAAACTAAGCGTTTTGCATAAGAAGGCATTTTGAATTGGGTGCGCGTTAAGAATCTATTCCTAAGGTAGTCCGCAAGAAGGATATGCGATAAGACCTATAAGTTTAAGAGTTTTTATGAAAGAAAAGGGTTTCGCGAATTGGTGTTAGGCGAGAATAAGGATTTGGTGAGAAGAAGTAAGAAAAGTTCAAAGCAATTTCTTAAGTGTGTTAAATGGGCCATATGTAGAGTTTAATTTAAGCATGTTTAAGAGTTAACCTTAAGCTCACATGTGCATCACTAAGAGTAGGAGTTGGCAAGCTAACATGAGTTTAGGTATAACTAAGCTGGTCTAAGGACTAGTATAAATAAAGGACCTCAGTCAATTGTTAAGCATTGTTACTCTGCCTTTTTTAAGAGAAAAATTAAGTGTTGAAGTGTTGTTCGGGCGTTTTGCGAGAAGGCTATGCGAGAAGAGGAAAAAAATGAGCATTTCAGAATTAAGGCTAAGTGTTGTGAGTATTTTCACTCAAAGTTTTTTGCTAAAAGTTTTCTTATAAAATCTTAATTGATTTGAAAGGATGGTTTCAAATATGAAAGTTTGGAAAAGAAGATTTATATGCAAAGCTTACATGTTTTCCAGTTTTCAAGGAGATTTATATGAAAATTTGATGTTATGATTTTAAGCATGATCTGATTATTGTGATTTCATTACTATAAATGGTGTTTAGGCCATTAGTTGCTTCCTTTGAAACGAGCTAACTTTTATGTGCACATAAAGACTAAAGGACACAATGAGTAAAGAAACTATGCAGTGATGATATGTTAGTTAATACGTTGAAATGAGCGTATTATACTTAACGACCTAAGCAACAAGGACATATTTGTATACTCTCGGATGCTGATGATTTCAGTAGTCTAAACGCGAAGTTACGTGATCTAGCGTAGAGAGTGATTCAGGATCCTTGACGAAAGGAATGTTTGGTAAATAATGTATGATATGCAAAATGATGTATCTATGTAAAATGATATATTTCTTTATTATGTTGATAAAATGATATTTGTGAAAAGGTATTGCAAAAAGGACTTCATAAAACCTCACTGAGTATTGTAGATTTATGTTTTCAAAATCTCATCTTCCAGAAATCAGGCGTTAAGGCCAAATAGAGAAGAAAGGAAAGGCTTGTTGGACGAGAAGGCTGCCAGTCATTTAGTTTAAGATTAATTAAAGTGTTGTATAGTACTTTTGGTTAAGTATTGTATTTTGTATTAAGCATTAAAGGCCTTGTTAAGTTAATAAAGTTTATGTTTGGTATATTTATGTGTGAAGTTACTTATATCGCCTAGAAGTTGTTTGTTATGCATCAGTTCAAGAAATTCAGAGATTAAGTTGAGCTTAAACCTCAAGAATGAGTGTCTTTGGCATTTTTCGCGTCAAGATGCTCCAAGTTGCACAGTGTCTCCCATGGCAAGGAAGGTTGTGTGTTGGGCAAGGTGTGACATAAGAAGCCTTTGTTTACACTCTTGTTGAGCAATAGTGAAGACGGTCAACGATAGCCAATGTTTTAAGACAATTGGTTCGTTGCCAACCATCATAAAAATCGGCCGTCAAGCATTATGGCTATTGGTCATTAACCATCACAATGACCATTTGTTAATAGTTACGACATCGATAATTAATGATAATGATAAGTATTAGTCGATCAAGATGTTCACTTGACGACAGTAACGTCCAAATTAGTTGTAGGTCACCAATGACCAAGATGATTGATAACTGATGATCCATAATTGACGGTCAAGACAATATGAAGGCGACGATCAAGATGATCTGAAGCCAACCGTTAAGATAATCTGTTATCGTGGCCGTCATGATCGTCGATCGATCATAATCAGTCATCATGGTTGA

mRNA sequence

ATGTTTGCGGCGGTTGCTGGAGTTGGTGGCCCGAAGTTTGCTAGCGGAGTTGTTAGAAATGACACCCAATGGCCAGCCGACAATGGTCATCAGGATTGGTGTTCGGAACAATATGAAGGCGACGATCAAGATGATCTGAAGCCAACCGTTAAGATAATCTGTTATCGTGGCCGTCATGATCGTCGATCGATCATAATCAGTCATCATGGTTGA

Coding sequence (CDS)

ATGTTTGCGGCGGTTGCTGGAGTTGGTGGCCCGAAGTTTGCTAGCGGAGTTGTTAGAAATGACACCCAATGGCCAGCCGACAATGGTCATCAGGATTGGTGTTCGGAACAATATGAAGGCGACGATCAAGATGATCTGAAGCCAACCGTTAAGATAATCTGTTATCGTGGCCGTCATGATCGTCGATCGATCATAATCAGTCATCATGGTTGA

Protein sequence

MFAAVAGVGGPKFASGVVRNDTQWPADNGHQDWCSEQYEGDDQDDLKPTVKIICYRGRHDRRSIIISHHG*

Homology

[Close]

BLAST of CsaV3_5G015480 vs. NCBI nr
Match: KGN49688.1 (hypothetical protein Csa_018362 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 2.7e-34
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MFAAVAGVGGPKFASGVVRNDTQWPADNGHQDWCSEQYEGDDQDDLKPTVKIICYRGRHD 60
          MFAAVAGVGGPKFASGVVRNDTQWPADNGHQDWCSEQYEGDDQDDLKPTVKIICYRGRHD
Sbjct: 1  MFAAVAGVGGPKFASGVVRNDTQWPADNGHQDWCSEQYEGDDQDDLKPTVKIICYRGRHD 60

Query: 61 RRSIIISHHG 71
          RRSIIISHHG
Sbjct: 61 RRSIIISHHG 70

[Close]

BLAST of CsaV3_5G015480 vs. ExPASy TrEMBL
Match: A0A0A0KJE6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G067660 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.3e-34
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MFAAVAGVGGPKFASGVVRNDTQWPADNGHQDWCSEQYEGDDQDDLKPTVKIICYRGRHD 60
          MFAAVAGVGGPKFASGVVRNDTQWPADNGHQDWCSEQYEGDDQDDLKPTVKIICYRGRHD
Sbjct: 1  MFAAVAGVGGPKFASGVVRNDTQWPADNGHQDWCSEQYEGDDQDDLKPTVKIICYRGRHD 60

Query: 61 RRSIIISHHG 71
          RRSIIISHHG
Sbjct: 61 RRSIIISHHG 70

The following BLAST results are available for this feature:

BLAST of CsaV3_5G015480 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49688.1	2.7e-34	100.00	hypothetical protein Csa_018362 [Cucumis sativus]	[more]

BLAST of CsaV3_5G015480 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G015480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJE6	1.3e-34	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G067660 PE=4 SV=1	[more]

BLAST of CsaV3_5G015480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G015480.1	CsaV3_5G015480.1	mRNA