CsaV3_5G015130 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G015130
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5: 12323638 .. 12324670 (-)
RNA-Seq ExpressionCsaV3_5G015130
SyntenyCsaV3_5G015130
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTACTATGGTACCACAAGGAAGGCCAAGGTGAGTCAAGCAAGTAGCAATAGAAGTTTAGGAATTGGGAGTTTCAATAGAGCGTATGCATCTGAGGTGTCTAGTAACCCCACATTTATTCGATGAGAAGAAGAGTCGAGGAAGACATCACTACAACAAAATCAGCTTCTATGACAGTTCAATGCAACCCAAATTAAAGAGAGGGAAGAAAAATTGTTGTAGAAGGTCAAAACACGCATTTTTGGTAGGAAAACACGTTGTTTTCGAATTCTACATTTTCGTGACAATTATTTGATGTCATAAAAGTTAAAAACATTAAGAAATTTATTTATTTAAATTTATTAAAATAAAACTTAATTTTATATTCCAAAAAATGTAAAACTCACTAGCCCTTCTCTAAATCGTGCCCTTGTTTAAATCATCTTCCTCTCAGACCCTCACTCTGCCAACCAGACCATTAGACGAACAACCACTGTCGATCTTTGAAAATGCCCCGACTATCTCCCAACATCATCCGTCACTGCCAATCGTCGCCTACAGTTTGTCTCTGGAACCAAATGCCCGCCGTCGAAGACATTTTCTAAGGTTAGGTTTTGTTGTTTTCTCTGATTCTTCTTCTTCTTTCTTCTCATTTCTTTCTTTTGCTTTTCTGTTTATGTATTAAAACTTTTTTTATGAGGAGATTGTATCAATAGAAATTAAAGATCCGATCACTATTTGCACTTCTCCTTTGACGTCTTTACACATTAGGGTGTTAAAATAAAGTAGTTATTATCAAGACAAAATTTGTTAACATACTGAAGATTGGAGGTTAACTGTGGAGCATGGTAGAGTTTGGAGAGATTAAAAGAGTTTAAACAAGTTGAAAAGGTACCACTACTATTGTGGTATTCAAGGGATGACCATTGTCGACAGTATCCATCTCCTCACCATTATAATGGTTGTATAACTTAAGAGCCAAAAATTACCATTAGGGAGAGAATTACGTGAATACATTATATTGGTAGCCATATGTCAGGATTCTAACACACTTTC

mRNA sequence

TACTATGGTACCACAAGGAAGGCCAAGGTGAGTCAAGCAAGTAGCAATAGAAGTTTAGGAATTGGGAGTTTCAATAGAGCGTATGCATCTGAGACCCTCACTCTGCCAACCAGACCATTAGACGAACAACCACTGTCGATCTTTGAAAATGCCCCGACTATCTCCCAACATCATCCGTCACTGCCAATCGTCGCCTACAGTTTGTCTCTGGAACCAAATGCCCGCCGTCGAAGACATTTTCTAAGGTTAGGTTTTGTTGTTTTCTCTGATTCTTCTTCTTCTTTCTTCTCATTTCTTTCTTTTGCTTTTCTGTTTATGTATTAA

Coding sequence (CDS)

TACTATGGTACCACAAGGAAGGCCAAGGTGAGTCAAGCAAGTAGCAATAGAAGTTTAGGAATTGGGAGTTTCAATAGAGCGTATGCATCTGAGACCCTCACTCTGCCAACCAGACCATTAGACGAACAACCACTGTCGATCTTTGAAAATGCCCCGACTATCTCCCAACATCATCCGTCACTGCCAATCGTCGCCTACAGTTTGTCTCTGGAACCAAATGCCCGCCGTCGAAGACATTTTCTAAGGTTAGGTTTTGTTGTTTTCTCTGATTCTTCTTCTTCTTTCTTCTCATTTCTTTCTTTTGCTTTTCTGTTTATGTATTAA

Protein sequence

YYGTTRKAKVSQASSNRSLGIGSFNRAYASETLTLPTRPLDEQPLSIFENAPTISQHHPSLPIVAYSLSLEPNARRRRHFLRLGFVVFSDSSSSFFSFLSFAFLFMY*
Homology
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BLAST of CsaV3_5G015130 vs. NCBI nr
Match: KAE8648212.1 (hypothetical protein Csa_018366, partial [Cucumis sativus])

HSP 1 Score: 206.8 bits (525), Expect = 9.1e-50
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 1   YYGTTRKAKVSQASSNRSLGIGSFNRAYASETLTLPTRPLDEQPLSIFENAPTISQHHPS 60
           YYGTTRKAKVSQASSNRSLGIGSFNRAYASETLTLPTRPLDEQPLSIFENAPTISQHHPS
Sbjct: 1   YYGTTRKAKVSQASSNRSLGIGSFNRAYASETLTLPTRPLDEQPLSIFENAPTISQHHPS 60

Query: 61  LPIVAYSLSLEPNARRRRHFLRLGFVVFSDSSSSFFSFLSFAFLFMY 108
           LPIVAYSLSLEPNARRRRHFLRLGFVVFSDSSSSFFSFLSFAFLFMY
Sbjct: 61  LPIVAYSLSLEPNARRRRHFLRLGFVVFSDSSSSFFSFLSFAFLFMY 107

The following BLAST results are available for this feature:
BLAST of CsaV3_5G015130 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8648212.19.1e-50100.00hypothetical protein Csa_018366, partial [Cucumis sativus][more]
BLAST of CsaV3_5G015130 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G015130 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G015130 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G015130.1CsaV3_5G015130.1mRNA