CsaV3_5G014680 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G014680
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Farnesyl pyrophosphate synthase
Location	chr5: 11741906 .. 11743435 (-)
RNA-Seq Expression	CsaV3_5G014680
Synteny	CsaV3_5G014680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGATTTCTCATCTCTGTTGTCGTCTCTCTGCTCGTCGTTGCTATGTTCGTCAGATTGACTTGAGGAAGGTAGATGGGCAACTTCAAGCTATAACTTTCAGACATCGCTCCCTACCCTATTGATTGACAGTGGTTGAATCAGGAGCCGAAACCCACCCTCAAACGAAGATTTCTCATCTCTTTTTCGGTGATACCCTCCCTTTCACGACTGCCGTTCAATCGAAGACGACGATACTTTCATCTCATTCCATCGTCTCTCTGTCCGTCTTCACTTTCATCACACGATTTCCCAAGAATTTTCTATTTCCCGGCTTCAATCTCTCAGACTTGTGATCTCTTGGCTTCATCTGAACACCGTCGTTCACATGGGTTTTGCTTAGGGTTCTTCGTCCAGTTTTTTAGCTTTAAACAATGGGTTATTTTGATGTTTTGGCTTAAAAAATCCTTCCACATTTGTTCTTCATATTTTTCTTCATGCCCTAATCTCCAATTTTTGTTTATTACATTAATCCCTTTCATGTTTTGTTCTTAAAAAAAGTATTGAGGTTTTGTTTTCTTAATTGATTTCTTGCAGTTTTAATCCCTCACAGCAAAGGCTTCTCTTTCCATTGGCAAATCCTCCATTTGCTCGATGAAATTGAGATTGGAGATTTTCAACAAGAGGTAAATTTACACAATCTCTCTCTGTCTTTTATTACAGATTTCTCTCCCACATCCTACGACCTTTTTTTGTTGTTTTCACTTCCATATATTATTTTTGGGTGTTTTCTAATGCTCATATAATGTAACTTTTGTAGTCATCAGCATATTGTACAGTACAAAACTGCCTATTATTCATTTTGCCTTCCAGTGAGTAGCTTTTCCTTGCTCTACTTTAAGAAAGCAGTGTTTGTGAAGTGGTTGAAGAATTAGTAGCTTCTTGGTGGCTTGCATTATCCATTTTTGTAAAATACATTGTGTGAAGTTTTATTCTTCAGATCATTTCTTTAATAAAATACTCACTATTGTTTGTGAAAGATTTGACTGACAGTGTGCTATTTTTGTCATGATTGCAGGTGGCTTGTGCACTGGTTATGGCAGGTGAAGATCTTGAGAAACATACTGCAGTTAAGGACATTCTTATTCAGATTGATGTTTATTTTCAAGTTCAGGTATATTACTTTCACTTGAATGGTTGATTAATGATTTTGATTTTCTCTACATTTCTTAGGGTTGATGCCACATTCACATTATTTGAACTACCCTTAGTTTTTTAAGAAGTGTTTGTTTAATGAAGGGCTGACCTTGCTTCCTATCAATTCTTCTTTTGAGTTCCATATTTCCTGCTCTAGAATTAGACTATTCTATATATATACTAAGACATATCTTCAGGCTTTTAAGCCTATTTAGTTGCCTTATCATTCAAGATCTTCTTTCAGAGATGAGGCTGCTGAGGCAGGAACTACTACTGCTACAGAAAGAACTGGGACAAGAACTGAAACTACTTCCCTTGAAACCACAACTTCAATGGATGACTCTTCAACATAG

mRNA sequence

ATGACGATTTCTCATCTCTGTTGTCGTCTCTCTGCTCGTCGTTGCTATGTTCGTCAGATTGACTTGAGGAAGGTGGCTTGTGCACTGGTTATGGCAGGTGAAGATCTTGAGAAACATACTGCAGTTAAGGACATTCTTATTCAGATTGATGTTTATTTTCAAGTTCAGTTGCCTTATCATTCAAGATCTTCTTTCAGAGATGAGGCTGCTGAGGCAGGAACTACTACTGCTACAGAAAGAACTGGGACAAGAACTGAAACTACTTCCCTTGAAACCACAACTTCAATGGATGACTCTTCAACATAG

Coding sequence (CDS)

ATGACGATTTCTCATCTCTGTTGTCGTCTCTCTGCTCGTCGTTGCTATGTTCGTCAGATTGACTTGAGGAAGGTGGCTTGTGCACTGGTTATGGCAGGTGAAGATCTTGAGAAACATACTGCAGTTAAGGACATTCTTATTCAGATTGATGTTTATTTTCAAGTTCAGTTGCCTTATCATTCAAGATCTTCTTTCAGAGATGAGGCTGCTGAGGCAGGAACTACTACTGCTACAGAAAGAACTGGGACAAGAACTGAAACTACTTCCCTTGAAACCACAACTTCAATGGATGACTCTTCAACATAG

Protein sequence

MTISHLCCRLSARRCYVRQIDLRKVACALVMAGEDLEKHTAVKDILIQIDVYFQVQLPYHSRSSFRDEAAEAGTTTATERTGTRTETTSLETTTSMDDSST*

Homology

[Close]

BLAST of CsaV3_5G014680 vs. NCBI nr
Match: KAE8648192.1 (hypothetical protein Csa_018386 [Cucumis sativus])

HSP 1 Score: 189.1 bits (479), Expect = 1.9e-44
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MTISHLCCRLSARRCYVRQIDLRKVACALVMAGEDLEKHTAVKDILIQIDVYFQVQLPYH 60
           MTISHLCCRLSARRCYVRQIDLRKVACALVMAGEDLEKHTAVKDILIQIDVYFQVQLPYH
Sbjct: 1   MTISHLCCRLSARRCYVRQIDLRKVACALVMAGEDLEKHTAVKDILIQIDVYFQVQLPYH 60

Query: 61  SRSSFRDEAAEAGTTTATERTGTRTETTSLETTTSMDDSST 102
           SRSSFRDEAAEAGTTTATERTGTRTETTSLETTTSMDDSST
Sbjct: 61  SRSSFRDEAAEAGTTTATERTGTRTETTSLETTTSMDDSST 101

[Close]

BLAST of CsaV3_5G014680 vs. NCBI nr
Match: XP_008463060.1 (PREDICTED: farnesyl pyrophosphate synthase 1 [Cucumis melo] >TYK26960.1 farnesyl pyrophosphate synthase 1 [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 3.4e-06
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 25  VACALVMAGEDLEKHTAVKDILIQIDVYFQVQLPY 60
           VACALVMAGEDLEKHTAVKDIL+Q+ VYFQVQ  Y
Sbjct: 200 VACALVMAGEDLEKHTAVKDILVQMGVYFQVQDDY 234

[Close]

BLAST of CsaV3_5G014680 vs. NCBI nr
Match: KAA0039151.1 (farnesyl pyrophosphate synthase 1 [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 3.4e-06
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 25  VACALVMAGEDLEKHTAVKDILIQIDVYFQVQLPY 60
           VACALVMAGEDLEKHTAVKDIL+Q+ VYFQVQ  Y
Sbjct: 201 VACALVMAGEDLEKHTAVKDILVQMGVYFQVQDDY 235

[Close]

BLAST of CsaV3_5G014680 vs. NCBI nr
Match: XP_038893588.1 (farnesyl pyrophosphate synthase 1 [Benincasa hispida])

HSP 1 Score: 59.3 bits (142), Expect = 2.2e-05
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 25  VACALVMAGEDLEKHTAVKDILIQIDVYFQVQLPY 60
           VACALVM+GEDLEKHT VKDIL+Q+ VYFQVQ  Y
Sbjct: 200 VACALVMSGEDLEKHTVVKDILVQMGVYFQVQDDY 234

[Close]

BLAST of CsaV3_5G014680 vs. NCBI nr
Match: XP_022142632.1 (farnesyl pyrophosphate synthase 1 [Momordica charantia])

HSP 1 Score: 58.9 bits (141), Expect = 2.9e-05
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 25  VACALVMAGEDLEKHTAVKDILIQIDVYFQVQLPY 60
           VACALVM+GEDLEKHT VKD+L+Q+ VYFQVQ  Y
Sbjct: 200 VACALVMSGEDLEKHTVVKDVLVQMGVYFQVQDDY 234

[Close]

BLAST of CsaV3_5G014680 vs. ExPASy Swiss-Prot
Match: Q4JHN6 (Farnesyl pyrophosphate synthase OS=Panax ginseng OX=4054 GN=FPS PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 5.5e-07
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 25  VACALVMAGEDLEKHTAVKDILIQIDVYFQVQLPY 60
           VACAL+M+GEDLEKHT VKDILI++  YFQVQ  Y
Sbjct: 200 VACALLMSGEDLEKHTNVKDILIEMGTYFQVQDDY 234

[Close]

BLAST of CsaV3_5G014680 vs. ExPASy Swiss-Prot
Match: O24242 (Farnesyl pyrophosphate synthase 2 OS=Parthenium argentatum OX=35935 GN=FPS2 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.3e-05
Identity = 22/35 (62.86%), Postives = 28/35 (80.00%), Query Frame = 0


Query: 25  VACALVMAGEDLEKHTAVKDILIQIDVYFQVQLPY 60
           VACAL+M GEDLEKH  VK++L+++  YFQVQ  Y
Sbjct: 200 VACALLMFGEDLEKHVEVKNVLVEMGTYFQVQDDY 234

[Close]

BLAST of CsaV3_5G014680 vs. ExPASy Swiss-Prot
Match: O24241 (Farnesyl pyrophosphate synthase 1 OS=Parthenium argentatum OX=35935 GN=FPS1 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.0e-05
Identity = 22/35 (62.86%), Postives = 28/35 (80.00%), Query Frame = 0


Query: 25  VACALVMAGEDLEKHTAVKDILIQIDVYFQVQLPY 60
           VACAL+M GEDLEKH  VK++L+++  YFQVQ  Y
Sbjct: 200 VACALLMFGEDLEKHEEVKNVLVEMGTYFQVQDDY 234

[Close]

BLAST of CsaV3_5G014680 vs. ExPASy Swiss-Prot
Match: Q43315 (Farnesyl pyrophosphate synthase 2 OS=Arabidopsis thaliana OX=3702 GN=FPS2 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.0e-05
Identity = 22/35 (62.86%), Postives = 28/35 (80.00%), Query Frame = 0


Query: 25  VACALVMAGEDLEKHTAVKDILIQIDVYFQVQLPY 60
           VACAL+MAGE+LE HT VK +L+ + +YFQVQ  Y
Sbjct: 200 VACALLMAGENLENHTDVKTVLVDMGIYFQVQDDY 234

[Close]

BLAST of CsaV3_5G014680 vs. ExPASy Swiss-Prot
Match: Q7XYS9 (Farnesyl diphosphate synthase 1 OS=Artemisia spiciformis OX=235357 GN=FDS-1 PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 5.1e-05
Identity = 21/35 (60.00%), Postives = 28/35 (80.00%), Query Frame = 0


Query: 25  VACALVMAGEDLEKHTAVKDILIQIDVYFQVQLPY 60
           VACAL+M GEDL+KH  VK++L+++  YFQVQ  Y
Sbjct: 204 VACALLMFGEDLDKHVEVKNVLVEMGTYFQVQDDY 238

[Close]

BLAST of CsaV3_5G014680 vs. ExPASy TrEMBL
Match: A0A0A0KPI3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G031950 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.6e-30
Identity = 77/79 (97.47%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 23  RKVACALVMAGEDLEKHTAVKDILIQIDVYFQVQLPYHSRSSFRDEAAEAGTTTATERTG 82
           ++VACALVMAGEDLEKHTAVKDILIQIDVYFQVQLPYHSRSSFRDEAAEAGTTTATERTG
Sbjct: 30  QEVACALVMAGEDLEKHTAVKDILIQIDVYFQVQLPYHSRSSFRDEAAEAGTTTATERTG 89

Query: 83  TRTETTSLETTTSMDDSST 102
           TRTETTSLETTTSMDDSST
Sbjct: 90  TRTETTSLETTTSMDDSST 108

[Close]

BLAST of CsaV3_5G014680 vs. ExPASy TrEMBL
Match: A0A5D3DUI0 (Farnesyl pyrophosphate synthase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold322G00220 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.7e-06
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 25  VACALVMAGEDLEKHTAVKDILIQIDVYFQVQLPY 60
           VACALVMAGEDLEKHTAVKDIL+Q+ VYFQVQ  Y
Sbjct: 200 VACALVMAGEDLEKHTAVKDILVQMGVYFQVQDDY 234

[Close]

BLAST of CsaV3_5G014680 vs. ExPASy TrEMBL
Match: A0A5A7TC04 (Farnesyl pyrophosphate synthase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold121G00500 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.7e-06
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 25  VACALVMAGEDLEKHTAVKDILIQIDVYFQVQLPY 60
           VACALVMAGEDLEKHTAVKDIL+Q+ VYFQVQ  Y
Sbjct: 201 VACALVMAGEDLEKHTAVKDILVQMGVYFQVQDDY 235

[Close]

BLAST of CsaV3_5G014680 vs. ExPASy TrEMBL
Match: A0A1S3CIB9 (farnesyl pyrophosphate synthase 1 OS=Cucumis melo OX=3656 GN=LOC103501295 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.7e-06
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 25  VACALVMAGEDLEKHTAVKDILIQIDVYFQVQLPY 60
           VACALVMAGEDLEKHTAVKDIL+Q+ VYFQVQ  Y
Sbjct: 200 VACALVMAGEDLEKHTAVKDILVQMGVYFQVQDDY 234

[Close]

BLAST of CsaV3_5G014680 vs. ExPASy TrEMBL
Match: A0A6J1CNE7 (farnesyl pyrophosphate synthase 1 OS=Momordica charantia OX=3673 GN=LOC111012696 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.4e-05
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 25  VACALVMAGEDLEKHTAVKDILIQIDVYFQVQLPY 60
           VACALVM+GEDLEKHT VKD+L+Q+ VYFQVQ  Y
Sbjct: 200 VACALVMSGEDLEKHTVVKDVLVQMGVYFQVQDDY 234

[Close]

BLAST of CsaV3_5G014680 vs. TAIR 10
Match: AT4G17190.2 (farnesyl diphosphate synthase 2 )

HSP 1 Score: 49.3 bits (116), Expect = 2.1e-06
Identity = 22/35 (62.86%), Postives = 28/35 (80.00%), Query Frame = 0


Query: 25  VACALVMAGEDLEKHTAVKDILIQIDVYFQVQLPY 60
           VACAL+MAGE+LE HT VK +L+ + +YFQVQ  Y
Sbjct: 105 VACALLMAGENLENHTDVKTVLVDMGIYFQVQDDY 139

[Close]

BLAST of CsaV3_5G014680 vs. TAIR 10
Match: AT4G17190.1 (farnesyl diphosphate synthase 2 )

HSP 1 Score: 49.3 bits (116), Expect = 2.1e-06
Identity = 22/35 (62.86%), Postives = 28/35 (80.00%), Query Frame = 0


Query: 25  VACALVMAGEDLEKHTAVKDILIQIDVYFQVQLPY 60
           VACAL+MAGE+LE HT VK +L+ + +YFQVQ  Y
Sbjct: 200 VACALLMAGENLENHTDVKTVLVDMGIYFQVQDDY 234

[Close]

BLAST of CsaV3_5G014680 vs. TAIR 10
Match: AT5G47770.1 (farnesyl diphosphate synthase 1 )

HSP 1 Score: 47.8 bits (112), Expect = 6.2e-06
Identity = 21/35 (60.00%), Postives = 28/35 (80.00%), Query Frame = 0


Query: 25  VACALVMAGEDLEKHTAVKDILIQIDVYFQVQLPY 60
           VACAL+MAGE+LE H  VK++L+ + +YFQVQ  Y
Sbjct: 242 VACALLMAGENLENHIDVKNVLVDMGIYFQVQDDY 276

The following BLAST results are available for this feature:

BLAST of CsaV3_5G014680 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648192.1	1.9e-44	100.00	hypothetical protein Csa_018386 [Cucumis sativus]	[more]
XP_008463060.1	3.4e-06	85.71	PREDICTED: farnesyl pyrophosphate synthase 1 [Cucumis melo] >TYK26960.1 farnesyl...	[more]
KAA0039151.1	3.4e-06	85.71	farnesyl pyrophosphate synthase 1 [Cucumis melo var. makuwa]	[more]
XP_038893588.1	2.2e-05	80.00	farnesyl pyrophosphate synthase 1 [Benincasa hispida]	[more]
XP_022142632.1	2.9e-05	77.14	farnesyl pyrophosphate synthase 1 [Momordica charantia]	[more]

BLAST of CsaV3_5G014680 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4JHN6	5.5e-07	74.29	Farnesyl pyrophosphate synthase OS=Panax ginseng OX=4054 GN=FPS PE=2 SV=1	[more]
O24242	2.3e-05	62.86	Farnesyl pyrophosphate synthase 2 OS=Parthenium argentatum OX=35935 GN=FPS2 PE=2...	[more]
O24241	3.0e-05	62.86	Farnesyl pyrophosphate synthase 1 OS=Parthenium argentatum OX=35935 GN=FPS1 PE=2...	[more]
Q43315	3.0e-05	62.86	Farnesyl pyrophosphate synthase 2 OS=Arabidopsis thaliana OX=3702 GN=FPS2 PE=2 S...	[more]
Q7XYS9	5.1e-05	60.00	Farnesyl diphosphate synthase 1 OS=Artemisia spiciformis OX=235357 GN=FDS-1 PE=1...	[more]

BLAST of CsaV3_5G014680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPI3	1.6e-30	97.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G031950 PE=4 SV=1	[more]
A0A5D3DUI0	1.7e-06	85.71	Farnesyl pyrophosphate synthase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TC04	1.7e-06	85.71	Farnesyl pyrophosphate synthase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A1S3CIB9	1.7e-06	85.71	farnesyl pyrophosphate synthase 1 OS=Cucumis melo OX=3656 GN=LOC103501295 PE=3 S...	[more]
A0A6J1CNE7	1.4e-05	77.14	farnesyl pyrophosphate synthase 1 OS=Momordica charantia OX=3673 GN=LOC111012696...	[more]

BLAST of CsaV3_5G014680 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G17190.2	2.1e-06	62.86	farnesyl diphosphate synthase 2	[more]
AT4G17190.1	2.1e-06	62.86	farnesyl diphosphate synthase 2	[more]
AT5G47770.1	6.2e-06	60.00	farnesyl diphosphate synthase 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G014680.1	CsaV3_5G014680.1	mRNA