CsaV3_5G014430 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G014430
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionZinc finger, RING-type
Locationchr5: 11422677 .. 11423154 (+)
RNA-Seq ExpressionCsaV3_5G014430
SyntenyCsaV3_5G014430
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAGTTTTCAAAGCTACGGTTGTCAATCTAAGCCTTTCCAAGTCTGTGAAATTTACTAATTTTTTTGTCGTTGCTTCACGTATCTTTAGCAAAAATCTCTCCTATGGTTTCTCAACCTTATAGATCAATTTGTACAGAAGTAATCAATGTTCTTCTTCCTCAAGATGAAACCTATATCGGTAATAACTTCATTTCCCTCTTTAGCCAACAAAAAATTTCCCTTGATGACCCTCAGCTGAAAAATTTAGCTCCAAGTCTCCACCCTCGAATTGTTGAAACTGTCTTGAATGGCTTGAGGAGTTGGAAGATTGCTCATATGTTCTTCACCTGGGCCTCAAAACAACATGAGTACAAACATAATTGTTATACTTTCACTGCCATTGCTAGACAAAATGCCCTACTACGAGCCGTTGCTATGGATGTCCTTAACTTTGGGAGTCTCTTTAAGATGTTTGGGAAGTGTGGGGTTGGTTGA

mRNA sequence

ATGACAGTTTTCAAAGCTACGGTTGTCAATCTAAGCCTTTCCAAATCAATTTGTACAGAAGTAATCAATGTTCTTCTTCCTCAAGATGAAACCTATATCGGTAATAACTTCATTTCCCTCTTTAGCCAACAAAAAATTTCCCTTGATGACCCTCAGCTGAAAAATTTAGCTCCAAGTCTCCACCCTCGAATTGTTGAAACTGTCTTGAATGGCTTGAGGAGTTGGAAGATTGCTCATATGTTCTTCACCTGGGCCTCAAAACAACATGAGTACAAACATAATTGTTATACTTTCACTGCCATTGCTAGACAAAATGCCCTACTACGAGCCGTTGCTATGGATGTCCTTAACTTTGGGAGTCTCTTTAAGATGTTTGGGAAGTGTGGGGTTGGTTGA

Coding sequence (CDS)

ATGACAGTTTTCAAAGCTACGGTTGTCAATCTAAGCCTTTCCAAATCAATTTGTACAGAAGTAATCAATGTTCTTCTTCCTCAAGATGAAACCTATATCGGTAATAACTTCATTTCCCTCTTTAGCCAACAAAAAATTTCCCTTGATGACCCTCAGCTGAAAAATTTAGCTCCAAGTCTCCACCCTCGAATTGTTGAAACTGTCTTGAATGGCTTGAGGAGTTGGAAGATTGCTCATATGTTCTTCACCTGGGCCTCAAAACAACATGAGTACAAACATAATTGTTATACTTTCACTGCCATTGCTAGACAAAATGCCCTACTACGAGCCGTTGCTATGGATGTCCTTAACTTTGGGAGTCTCTTTAAGATGTTTGGGAAGTGTGGGGTTGGTTGA

Protein sequence

MTVFKATVVNLSLSKSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVLNGLRSWKIAHMFFTWASKQHEYKHNCYTFTAIARQNALLRAVAMDVLNFGSLFKMFGKCGVG*
Homology
BLAST of CsaV3_5G014430 vs. NCBI nr
Match: KAE8648181.1 (hypothetical protein Csa_018533 [Cucumis sativus])

HSP 1 Score: 265.8 bits (678), Expect = 2.0e-67
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0

Query: 1   MTVFKATVVNLSLSKSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSL 60
           MTVFKATVVNLSLSKSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSL
Sbjct: 1   MTVFKATVVNLSLSKSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSL 60

Query: 61  HPRIVETVLNGLRSWKIAHMFFTWASKQHEYKHNCYTFTAIARQNALLRAVAMDVLNFGS 120
           HPRIVETVLNGLRSWKIAHMFFTWASKQHEYKHNCYTFTAIARQNALLRAVAMDVLNFGS
Sbjct: 61  HPRIVETVLNGLRSWKIAHMFFTWASKQHEYKHNCYTFTAIARQNALLRAVAMDVLNFGS 120

Query: 121 LFKMFGKCGVG 132
           LFKMFGKCGVG
Sbjct: 121 LFKMFGKCGVG 131

BLAST of CsaV3_5G014430 vs. NCBI nr
Match: XP_011654469.1 (putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Cucumis sativus] >XP_011654470.1 putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Cucumis sativus] >XP_011654471.1 putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Cucumis sativus] >KAE8648179.1 hypothetical protein Csa_018469 [Cucumis sativus])

HSP 1 Score: 178.3 bits (451), Expect = 4.3e-41
Identity = 100/151 (66.23%), Postives = 105/151 (69.54%), Query Frame = 0

Query: 1   MTVFKATVVNLSLSK---------------------------SICTEVINVLLPQDETYI 60
           M +FK T+ N SLSK                           SICTEVINVL P DETYI
Sbjct: 11  MALFKTTLANPSLSKSGKFTNSFAVASRIFSKNLSYVSQPYRSICTEVINVLPPLDETYI 70

Query: 61  GNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVLNGLRSWKIAHMFFTWASKQHEYKH 119
            NNFISLFSQQK SLDDPQLKNLAPSL+PRIVETVLNGL SWKIAHMFFTWASKQH Y+H
Sbjct: 71  SNNFISLFSQQKFSLDDPQLKNLAPSLNPRIVETVLNGLGSWKIAHMFFTWASKQHGYRH 130

BLAST of CsaV3_5G014430 vs. NCBI nr
Match: XP_038894372.1 (LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Benincasa hispida])

HSP 1 Score: 161.8 bits (408), Expect = 4.1e-36
Identity = 82/110 (74.55%), Postives = 90/110 (81.82%), Query Frame = 0

Query: 15  KSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVLNGLRS 74
           +SICTEVINV    DET+I +NFISLFSQQK S DDP+LKNLA  L+ RIVETVLNGLRS
Sbjct: 74  RSICTEVINVRPSLDETHISSNFISLFSQQKFSPDDPKLKNLASRLNTRIVETVLNGLRS 133

Query: 75  WKIAHMFFTWASKQHEYKHNCYTFTAI------ARQNALLRAVAMDVLNF 119
           WK+AHMFFTWASKQH Y+HNCYTF AI      ARQNA LRA+A DVLNF
Sbjct: 134 WKVAHMFFTWASKQHGYRHNCYTFNAIASILSHARQNAPLRAIAKDVLNF 183

BLAST of CsaV3_5G014430 vs. NCBI nr
Match: XP_022141713.1 (putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Momordica charantia])

HSP 1 Score: 161.0 bits (406), Expect = 7.0e-36
Identity = 82/110 (74.55%), Postives = 91/110 (82.73%), Query Frame = 0

Query: 15  KSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVLNGLRS 74
           + ICTEVINVL P DET+I NNFISLFSQ+K S DDP+LK LAP L+ +IVETVLNGLRS
Sbjct: 42  RPICTEVINVLPPLDETHISNNFISLFSQRKFSPDDPELKILAPRLNTQIVETVLNGLRS 101

Query: 75  WKIAHMFFTWASKQHEYKHNCYTFTAI------ARQNALLRAVAMDVLNF 119
           WKIAHMFF WASKQ+ Y+HNCYT+ AI      ARQNA LRAVAMDVLNF
Sbjct: 102 WKIAHMFFIWASKQNGYRHNCYTYNAIASILSRARQNAPLRAVAMDVLNF 151

BLAST of CsaV3_5G014430 vs. NCBI nr
Match: KAA0056820.1 (putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYJ99942.1 putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 155.6 bits (392), Expect = 3.0e-34
Identity = 79/108 (73.15%), Postives = 87/108 (80.56%), Query Frame = 0

Query: 15  KSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVLNGLRS 74
           +S+CTEVIN+L   DET I NNFISL SQQK SLDDP+LKNLA SL+PRIVETVLNGLR 
Sbjct: 7   RSVCTEVINILPSPDETCISNNFISLLSQQKFSLDDPELKNLASSLNPRIVETVLNGLRR 66

Query: 75  WKIAHMFFTWASKQHEYKHNCYTFTAI------ARQNALLRAVAMDVL 117
           W+IAHMFFTWASKQ  Y+HNCYTF AI      AR+ A LRAVA DVL
Sbjct: 67  WEIAHMFFTWASKQQGYRHNCYTFNAIASVLSHARKKAPLRAVARDVL 114

BLAST of CsaV3_5G014430 vs. ExPASy Swiss-Prot
Match: P0C8Q6 (Putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g08310 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.8e-18
Identity = 50/134 (37.31%), Postives = 80/134 (59.70%), Query Frame = 0

Query: 13  LSKSICTEVINV-LLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVLNG 72
           L + + T++ N   L  +++ +  N I +F++Q  S DDP+L  L+P L+ ++VETVLNG
Sbjct: 23  LHRPLTTKLDNTRFLHPNQSKLAQNLIVIFTRQPFSPDDPELLILSPELNTKVVETVLNG 82

Query: 73  LRSWKIAHMFFTWASKQHEYKHNCYTFTAI------ARQNALLRAVAMDVLN-------- 131
            + W +A++FF WASKQ  Y+++ Y + A+      ARQNA L+A+ +DVLN        
Sbjct: 83  FKRWGLAYLFFNWASKQEGYRNDMYAYNAMASILSRARQNASLKALVVDVLNSRCFMSPG 142

BLAST of CsaV3_5G014430 vs. ExPASy TrEMBL
Match: A0A0A0KL85 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G021860 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 2.6e-60
Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0

Query: 15  KSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVLNGLRS 74
           +SICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVLNGLRS
Sbjct: 7   RSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVLNGLRS 66

Query: 75  WKIAHMFFTWASKQHEYKHNCYTFTAIARQNALLRAVAMDVLNFGSLFKMFGKCGVG 132
           WKIAHMFFTWASKQHEYKHNCYTFTAIARQNALLRAVAMDVLNFGSLFKMFGKCGVG
Sbjct: 67  WKIAHMFFTWASKQHEYKHNCYTFTAIARQNALLRAVAMDVLNFGSLFKMFGKCGVG 123

BLAST of CsaV3_5G014430 vs. ExPASy TrEMBL
Match: A0A0A0KMI5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G021350 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 2.1e-41
Identity = 100/151 (66.23%), Postives = 105/151 (69.54%), Query Frame = 0

Query: 1   MTVFKATVVNLSLSK---------------------------SICTEVINVLLPQDETYI 60
           M +FK T+ N SLSK                           SICTEVINVL P DETYI
Sbjct: 1   MALFKTTLANPSLSKSGKFTNSFAVASRIFSKNLSYVSQPYRSICTEVINVLPPLDETYI 60

Query: 61  GNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVLNGLRSWKIAHMFFTWASKQHEYKH 119
            NNFISLFSQQK SLDDPQLKNLAPSL+PRIVETVLNGL SWKIAHMFFTWASKQH Y+H
Sbjct: 61  SNNFISLFSQQKFSLDDPQLKNLAPSLNPRIVETVLNGLGSWKIAHMFFTWASKQHGYRH 120

BLAST of CsaV3_5G014430 vs. ExPASy TrEMBL
Match: A0A6J1CLB5 (putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111012005 PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 3.4e-36
Identity = 82/110 (74.55%), Postives = 91/110 (82.73%), Query Frame = 0

Query: 15  KSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVLNGLRS 74
           + ICTEVINVL P DET+I NNFISLFSQ+K S DDP+LK LAP L+ +IVETVLNGLRS
Sbjct: 42  RPICTEVINVLPPLDETHISNNFISLFSQRKFSPDDPELKILAPRLNTQIVETVLNGLRS 101

Query: 75  WKIAHMFFTWASKQHEYKHNCYTFTAI------ARQNALLRAVAMDVLNF 119
           WKIAHMFF WASKQ+ Y+HNCYT+ AI      ARQNA LRAVAMDVLNF
Sbjct: 102 WKIAHMFFIWASKQNGYRHNCYTYNAIASILSRARQNAPLRAVAMDVLNF 151

BLAST of CsaV3_5G014430 vs. ExPASy TrEMBL
Match: A0A5A7UP07 (Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold701G00750 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.4e-34
Identity = 79/108 (73.15%), Postives = 87/108 (80.56%), Query Frame = 0

Query: 15  KSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVLNGLRS 74
           +S+CTEVIN+L   DET I NNFISL SQQK SLDDP+LKNLA SL+PRIVETVLNGLR 
Sbjct: 7   RSVCTEVINILPSPDETCISNNFISLLSQQKFSLDDPELKNLASSLNPRIVETVLNGLRR 66

Query: 75  WKIAHMFFTWASKQHEYKHNCYTFTAI------ARQNALLRAVAMDVL 117
           W+IAHMFFTWASKQ  Y+HNCYTF AI      AR+ A LRAVA DVL
Sbjct: 67  WEIAHMFFTWASKQQGYRHNCYTFNAIASVLSHARKKAPLRAVARDVL 114

BLAST of CsaV3_5G014430 vs. ExPASy TrEMBL
Match: A0A1S3BTR3 (putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103493457 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.4e-34
Identity = 79/108 (73.15%), Postives = 87/108 (80.56%), Query Frame = 0

Query: 15  KSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVLNGLRS 74
           +S+CTEVIN+L   DET I NNFISL SQQK SLDDP+LKNLA SL+PRIVETVLNGLR 
Sbjct: 73  RSVCTEVINILPSPDETCISNNFISLLSQQKFSLDDPELKNLASSLNPRIVETVLNGLRR 132

Query: 75  WKIAHMFFTWASKQHEYKHNCYTFTAI------ARQNALLRAVAMDVL 117
           W+IAHMFFTWASKQ  Y+HNCYTF AI      AR+ A LRAVA DVL
Sbjct: 133 WEIAHMFFTWASKQQGYRHNCYTFNAIASVLSHARKKAPLRAVARDVL 180

BLAST of CsaV3_5G014430 vs. TAIR 10
Match: AT5G08310.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-19
Identity = 50/134 (37.31%), Postives = 80/134 (59.70%), Query Frame = 0

Query: 13  LSKSICTEVINV-LLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVLNG 72
           L + + T++ N   L  +++ +  N I +F++Q  S DDP+L  L+P L+ ++VETVLNG
Sbjct: 23  LHRPLTTKLDNTRFLHPNQSKLAQNLIVIFTRQPFSPDDPELLILSPELNTKVVETVLNG 82

Query: 73  LRSWKIAHMFFTWASKQHEYKHNCYTFTAI------ARQNALLRAVAMDVLN-------- 131
            + W +A++FF WASKQ  Y+++ Y + A+      ARQNA L+A+ +DVLN        
Sbjct: 83  FKRWGLAYLFFNWASKQEGYRNDMYAYNAMASILSRARQNASLKALVVDVLNSRCFMSPG 142

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8648181.12.0e-67100.00hypothetical protein Csa_018533 [Cucumis sativus][more]
XP_011654469.14.3e-4166.23putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [C... [more]
XP_038894372.14.1e-3674.55LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At5g08... [more]
XP_022141713.17.0e-3674.55putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [M... [more]
KAA0056820.13.0e-3473.15putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] ... [more]
Match NameE-valueIdentityDescription
P0C8Q61.8e-1837.31Putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS... [more]
Match NameE-valueIdentityDescription
A0A0A0KL852.6e-6099.15Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G021860 PE=4 SV=1[more]
A0A0A0KMI52.1e-4166.23Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G021350 PE=4 SV=1[more]
A0A6J1CLB53.4e-3674.55putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS... [more]
A0A5A7UP071.4e-3473.15Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa... [more]
A0A1S3BTR31.4e-3473.15putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS... [more]
Match NameE-valueIdentityDescription
AT5G08310.11.3e-1937.31Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR47938RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATEDcoord: 32..121
NoneNo IPR availablePANTHERPTHR47938:SF24PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL-RELATEDcoord: 32..121

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G014430.1CsaV3_5G014430.1mRNA