CsaV3_5G014430 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGACAGTTTTCAAAGCTACGGTTGTCAATCTAAGCCTTTCCAAGTCTGTGAAATTTACTAATTTTTTTGTCGTTGCTTCACGTATCTTTAGCAAAAATCTCTCCTATGGTTTCTCAACCTTATAGATCAATTTGTACAGAAGTAATCAATGTTCTTCTTCCTCAAGATGAAACCTATATCGGTAATAACTTCATTTCCCTCTTTAGCCAACAAAAAATTTCCCTTGATGACCCTCAGCTGAAAAATTTAGCTCCAAGTCTCCACCCTCGAATTGTTGAAACTGTCTTGAATGGCTTGAGGAGTTGGAAGATTGCTCATATGTTCTTCACCTGGGCCTCAAAACAACATGAGTACAAACATAATTGTTATACTTTCACTGCCATTGCTAGACAAAATGCCCTACTACGAGCCGTTGCTATGGATGTCCTTAACTTTGGGAGTCTCTTTAAGATGTTTGGGAAGTGTGGGGTTGGTTGA ATGACAGTTTTCAAAGCTACGGTTGTCAATCTAAGCCTTTCCAAATCAATTTGTACAGAAGTAATCAATGTTCTTCTTCCTCAAGATGAAACCTATATCGGTAATAACTTCATTTCCCTCTTTAGCCAACAAAAAATTTCCCTTGATGACCCTCAGCTGAAAAATTTAGCTCCAAGTCTCCACCCTCGAATTGTTGAAACTGTCTTGAATGGCTTGAGGAGTTGGAAGATTGCTCATATGTTCTTCACCTGGGCCTCAAAACAACATGAGTACAAACATAATTGTTATACTTTCACTGCCATTGCTAGACAAAATGCCCTACTACGAGCCGTTGCTATGGATGTCCTTAACTTTGGGAGTCTCTTTAAGATGTTTGGGAAGTGTGGGGTTGGTTGA ATGACAGTTTTCAAAGCTACGGTTGTCAATCTAAGCCTTTCCAAATCAATTTGTACAGAAGTAATCAATGTTCTTCTTCCTCAAGATGAAACCTATATCGGTAATAACTTCATTTCCCTCTTTAGCCAACAAAAAATTTCCCTTGATGACCCTCAGCTGAAAAATTTAGCTCCAAGTCTCCACCCTCGAATTGTTGAAACTGTCTTGAATGGCTTGAGGAGTTGGAAGATTGCTCATATGTTCTTCACCTGGGCCTCAAAACAACATGAGTACAAACATAATTGTTATACTTTCACTGCCATTGCTAGACAAAATGCCCTACTACGAGCCGTTGCTATGGATGTCCTTAACTTTGGGAGTCTCTTTAAGATGTTTGGGAAGTGTGGGGTTGGTTGA MTVFKATVVNLSLSKSICTEVINVLLPQDETYIGNNFISLFSQQKISLDDPQLKNLAPSLHPRIVETVLNGLRSWKIAHMFFTWASKQHEYKHNCYTFTAIARQNALLRAVAMDVLNFGSLFKMFGKCGVG* Homology
BLAST of CsaV3_5G014430 vs. NCBI nr
Match: KAE8648181.1 (hypothetical protein Csa_018533 [Cucumis sativus]) HSP 1 Score: 265.8 bits (678), Expect = 2.0e-67 Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0
BLAST of CsaV3_5G014430 vs. NCBI nr
Match: XP_011654469.1 (putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Cucumis sativus] >XP_011654470.1 putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Cucumis sativus] >XP_011654471.1 putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Cucumis sativus] >KAE8648179.1 hypothetical protein Csa_018469 [Cucumis sativus]) HSP 1 Score: 178.3 bits (451), Expect = 4.3e-41 Identity = 100/151 (66.23%), Postives = 105/151 (69.54%), Query Frame = 0
BLAST of CsaV3_5G014430 vs. NCBI nr
Match: XP_038894372.1 (LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Benincasa hispida]) HSP 1 Score: 161.8 bits (408), Expect = 4.1e-36 Identity = 82/110 (74.55%), Postives = 90/110 (81.82%), Query Frame = 0
BLAST of CsaV3_5G014430 vs. NCBI nr
Match: XP_022141713.1 (putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial [Momordica charantia]) HSP 1 Score: 161.0 bits (406), Expect = 7.0e-36 Identity = 82/110 (74.55%), Postives = 91/110 (82.73%), Query Frame = 0
BLAST of CsaV3_5G014430 vs. NCBI nr
Match: KAA0056820.1 (putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYJ99942.1 putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 155.6 bits (392), Expect = 3.0e-34 Identity = 79/108 (73.15%), Postives = 87/108 (80.56%), Query Frame = 0
BLAST of CsaV3_5G014430 vs. ExPASy Swiss-Prot
Match: P0C8Q6 (Putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g08310 PE=3 SV=1) HSP 1 Score: 93.6 bits (231), Expect = 1.8e-18 Identity = 50/134 (37.31%), Postives = 80/134 (59.70%), Query Frame = 0
BLAST of CsaV3_5G014430 vs. ExPASy TrEMBL
Match: A0A0A0KL85 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G021860 PE=4 SV=1) HSP 1 Score: 241.1 bits (614), Expect = 2.6e-60 Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0
BLAST of CsaV3_5G014430 vs. ExPASy TrEMBL
Match: A0A0A0KMI5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G021350 PE=4 SV=1) HSP 1 Score: 178.3 bits (451), Expect = 2.1e-41 Identity = 100/151 (66.23%), Postives = 105/151 (69.54%), Query Frame = 0
BLAST of CsaV3_5G014430 vs. ExPASy TrEMBL
Match: A0A6J1CLB5 (putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111012005 PE=3 SV=1) HSP 1 Score: 161.0 bits (406), Expect = 3.4e-36 Identity = 82/110 (74.55%), Postives = 91/110 (82.73%), Query Frame = 0
BLAST of CsaV3_5G014430 vs. ExPASy TrEMBL
Match: A0A5A7UP07 (Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold701G00750 PE=4 SV=1) HSP 1 Score: 155.6 bits (392), Expect = 1.4e-34 Identity = 79/108 (73.15%), Postives = 87/108 (80.56%), Query Frame = 0
BLAST of CsaV3_5G014430 vs. ExPASy TrEMBL
Match: A0A1S3BTR3 (putative pentatricopeptide repeat-containing protein At5g08310, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103493457 PE=4 SV=1) HSP 1 Score: 155.6 bits (392), Expect = 1.4e-34 Identity = 79/108 (73.15%), Postives = 87/108 (80.56%), Query Frame = 0
BLAST of CsaV3_5G014430 vs. TAIR 10
Match: AT5G08310.1 (Tetratricopeptide repeat (TPR)-like superfamily protein ) HSP 1 Score: 93.6 bits (231), Expect = 1.3e-19 Identity = 50/134 (37.31%), Postives = 80/134 (59.70%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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