CsaV3_5G012920 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G012920
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Cystatin/monellin superfamily protein
Location	chr5: 9162439 .. 9162759 (-)
RNA-Seq Expression	CsaV3_5G012920
Synteny	CsaV3_5G012920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTGTGTACAAGTACCTCCAAATACTCATGACTTGATTAAGGATGTCCATAGCCCAGACGTAGTAGAAGCTGGAAAGGTAGCAGTGGAAGAACATAACAAGAAAGAAAATGACAATTTAGTTTTCATTCGTGTAGTGAGTGCTATAGCACCCCGAGCTCTTATTTTTATTAAATTGTGGTCATTTATCCTTGTGATAGAAGCTAAAACTTGCAATGGATTTCCTGTCACATATGTGGTTGAAATAGATAAGTATCTTACAATTCCAGAGGAAAGCTATAAACTTATCAGGTTTGAAGCAGTACTCGAGTATAAGTAG

mRNA sequence

ATGAGTTGTGTACAAGTACCTCCAAATACTCATGACTTGATTAAGGATGTCCATAGCCCAGACGTAGTAGAAGCTGGAAAGGTAGCAGTGGAAGAACATAACAAGAAAGAAAATGACAATTTAGTTTTCATTCGTGTAGTGAGTGCTATAGCACCCCGAGCTCTTATTTTTATTAAATTGTGGTCATTTATCCTTGTGATAGAAGCTAAAACTTGCAATGGATTTCCTGTCACATATGTGGTTGAAATAGATAAGTATCTTACAATTCCAGAGGAAAGCTATAAACTTATCAGGTTTGAAGCAGTACTCGAGTATAAGTAG

Coding sequence (CDS)

ATGAGTTGTGTACAAGTACCTCCAAATACTCATGACTTGATTAAGGATGTCCATAGCCCAGACGTAGTAGAAGCTGGAAAGGTAGCAGTGGAAGAACATAACAAGAAAGAAAATGACAATTTAGTTTTCATTCGTGTAGTGAGTGCTATAGCACCCCGAGCTCTTATTTTTATTAAATTGTGGTCATTTATCCTTGTGATAGAAGCTAAAACTTGCAATGGATTTCCTGTCACATATGTGGTTGAAATAGATAAGTATCTTACAATTCCAGAGGAAAGCTATAAACTTATCAGGTTTGAAGCAGTACTCGAGTATAAGTAG

Protein sequence

MSCVQVPPNTHDLIKDVHSPDVVEAGKVAVEEHNKKENDNLVFIRVVSAIAPRALIFIKLWSFILVIEAKTCNGFPVTYVVEIDKYLTIPEESYKLIRFEAVLEYK*

Homology

[Close]

BLAST of CsaV3_5G012920 vs. NCBI nr
Match: KAE8648094.1 (hypothetical protein Csa_004738 [Cucumis sativus])

HSP 1 Score: 212.6 bits (540), Expect = 1.6e-51
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MSCVQVPPNTHDLIKDVHSPDVVEAGKVAVEEHNKKENDNLVFIRVVSAIAPRALIFIKL 60
           MSCVQVPPNTHDLIKDVHSPDVVEAGKVAVEEHNKKENDNLVFIRVVSAIAPRALIFIKL
Sbjct: 1   MSCVQVPPNTHDLIKDVHSPDVVEAGKVAVEEHNKKENDNLVFIRVVSAIAPRALIFIKL 60

Query: 61  WSFILVIEAKTCNGFPVTYVVEIDKYLTIPEESYKLIRFEAVLEYK 107
           WSFILVIEAKTCNGFPVTYVVEIDKYLTIPEESYKLIRFEAVLEYK
Sbjct: 61  WSFILVIEAKTCNGFPVTYVVEIDKYLTIPEESYKLIRFEAVLEYK 106

[Close]

BLAST of CsaV3_5G012920 vs. NCBI nr
Match: KAE8648095.1 (hypothetical protein Csa_004720 [Cucumis sativus])

HSP 1 Score: 166.4 bits (420), Expect = 1.4e-37
Identity = 79/106 (74.53%), Postives = 93/106 (87.74%), Query Frame = 0


Query: 1   MSCVQVPPNTHDLIKDVHSPDVVEAGKVAVEEHNKKENDNLVFIRVVSAIAPRALIFIKL 60
           MSCVQV PNTHDLIKDVHSP+V+EAGK+AV+EHNKKENDNLVF RVVS +APRA+I   L
Sbjct: 1   MSCVQVLPNTHDLIKDVHSPNVIEAGKIAVDEHNKKENDNLVFTRVVSGLAPRAIIGTIL 60

Query: 61  WSFILVIEAKTCNGFPVTYVVEIDKYLTIPEESYKLIRFEAVLEYK 107
           WS+ILVIEAK C+G+PV YV +I KYLTIPE SY+L+ F+A+L YK
Sbjct: 61  WSYILVIEAKNCDGYPVAYVAKIVKYLTIPENSYELVSFQAILGYK 106

[Close]

BLAST of CsaV3_5G012920 vs. TAIR 10
Match: AT4G16500.1 (Cystatin/monellin superfamily protein )

HSP 1 Score: 43.1 bits (100), Expect = 1.6e-04
Identity = 19/34 (55.88%), Postives = 25/34 (73.53%), Query Frame = 0


Query: 14 IKDVHSPDVVEAGKVAVEEHNKKENDNLVFIRVV 48
          IK+V  PDVV   K A+EEHNK+  + LVF++VV
Sbjct: 35 IKNVSDPDVVAVAKYAIEEHNKESKEKLVFVKVV 68

The following BLAST results are available for this feature:

BLAST of CsaV3_5G012920 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648094.1	1.6e-51	100.00	hypothetical protein Csa_004738 [Cucumis sativus]	[more]
KAE8648095.1	1.4e-37	74.53	hypothetical protein Csa_004720 [Cucumis sativus]	[more]

BLAST of CsaV3_5G012920 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G012920 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G012920 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16500.1	1.6e-04	55.88	Cystatin/monellin superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000010	Cystatin domain	PFAM	PF16845	SQAPI	coord: 14..49 e-value: 5.3E-8 score: 33.1
None	No IPR available	GENE3D	3.10.450.10		coord: 9..106 e-value: 5.6E-10 score: 41.1
None	No IPR available	SUPERFAMILY	54403	Cystatin/monellin	coord: 14..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G012920.1	CsaV3_5G012920.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0004869	cysteine-type endopeptidase inhibitor activity