CsaV3_5G012380 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G012380
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Retrotran_gag_3 domain-containing protein
Location	chr5: 7663051 .. 7663446 (+)
RNA-Seq Expression	CsaV3_5G012380
Synteny	CsaV3_5G012380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACCTCCAACTCTCAATTTGATCTCATCTCCACTAAAACTCCTAATCCCATCCCCACAAATTCATCACCACAAAATCAATTTGTTCCTACTTCCACTCTCTTTTTGCTATCCAATATTTGTAACTTTGTTCCCCTTCGTCTAGACTCCACCAATTATGTTCTAGGGAAATACCAGGTTTCTTCCATCCTCAAAGCCCATTTCGTGTTTGGTCACATTGACGATTCTTTCTCGTGTCCTCCAAAATTTTTATCTTCACCAACTACTGGAACCACTCCTAAAACCAGTTCTTATCATCTTCATTGGCTCTCCCGTGACCAAGCCCTTATCACCCTTATAAACGCAACCTTATCACCTTCTGCCCTTGCTCATGTTGTCGGCTCACCCTCATAA

mRNA sequence

ATGGCCACCTCCAACTCTCAATTTGATCTCATCTCCACTAAAACTCCTAATCCCATCCCCACAAATTCATCACCACAAAATCAATTTGTTCCTACTTCCACTCTCTTTTTGCTATCCAATATTTGTAACTTTGTTCCCCTTCGTCTAGACTCCACCAATTATGTTCTAGGGAAATACCAGGTTTCTTCCATCCTCAAAGCCCATTTCGTGTTTGGTCACATTGACGATTCTTTCTCGTGTCCTCCAAAATTTTTATCTTCACCAACTACTGGAACCACTCCTAAAACCAGTTCTTATCATCTTCATTGGCTCTCCCGTGACCAAGCCCTTATCACCCTTATAAACGCAACCTTATCACCTTCTGCCCTTGCTCATGTTGTCGGCTCACCCTCATAA

Coding sequence (CDS)

ATGGCCACCTCCAACTCTCAATTTGATCTCATCTCCACTAAAACTCCTAATCCCATCCCCACAAATTCATCACCACAAAATCAATTTGTTCCTACTTCCACTCTCTTTTTGCTATCCAATATTTGTAACTTTGTTCCCCTTCGTCTAGACTCCACCAATTATGTTCTAGGGAAATACCAGGTTTCTTCCATCCTCAAAGCCCATTTCGTGTTTGGTCACATTGACGATTCTTTCTCGTGTCCTCCAAAATTTTTATCTTCACCAACTACTGGAACCACTCCTAAAACCAGTTCTTATCATCTTCATTGGCTCTCCCGTGACCAAGCCCTTATCACCCTTATAAACGCAACCTTATCACCTTCTGCCCTTGCTCATGTTGTCGGCTCACCCTCATAA

Protein sequence

MATSNSQFDLISTKTPNPIPTNSSPQNQFVPTSTLFLLSNICNFVPLRLDSTNYVLGKYQVSSILKAHFVFGHIDDSFSCPPKFLSSPTTGTTPKTSSYHLHWLSRDQALITLINATLSPSALAHVVGSPS*

Homology

[Close]

BLAST of CsaV3_5G012380 vs. NCBI nr
Match: KGN50818.1 (hypothetical protein Csa_018838 [Cucumis sativus])

HSP 1 Score: 263.8 bits (673), Expect = 7.7e-67
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 1   MATSNSQFDLISTKTPNPIPTNSSPQNQFVPTSTLFLLSNICNFVPLRLDSTNYVLGKYQ 60
           MATSNSQFDLISTKTPNPIPTNSSPQNQFVPTSTLFLLSNICNFVPLRLDSTNYVLGKYQ
Sbjct: 1   MATSNSQFDLISTKTPNPIPTNSSPQNQFVPTSTLFLLSNICNFVPLRLDSTNYVLGKYQ 60

Query: 61  VSSILKAHFVFGHIDDSFSCPPKFLSSPTTGTTPKTSSYHLHWLSRDQALITLINATLSP 120
           VSSILKAHFVFGHIDDSFSCPPKFLSSPTTGTTPKTSSYHLHWLSRDQALITLINATLSP
Sbjct: 61  VSSILKAHFVFGHIDDSFSCPPKFLSSPTTGTTPKTSSYHLHWLSRDQALITLINATLSP 120

Query: 121 SALAHVVGSPS 132
           SALAHVVGSPS
Sbjct: 121 SALAHVVGSPS 131

[Close]

BLAST of CsaV3_5G012380 vs. NCBI nr
Match: TYJ97594.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 169.1 bits (427), Expect = 2.6e-38
Identity = 92/129 (71.32%), Postives = 102/129 (79.07%), Query Frame = 0


Query: 1   MATSNSQFDLISTKTPNPIPTNSSPQNQFVPTSTLFLLSNICNFVPLRLDSTNYVLGKYQ 60
           MAT + Q DL  +KT NPIP +SS  N +VPTSTLFLLSNICN VP+RLDSTNYVL KYQ
Sbjct: 1   MATPSFQSDL--SKTSNPIPESSS--NPYVPTSTLFLLSNICNLVPIRLDSTNYVLWKYQ 60

Query: 61  VSSILKAHFVFGHIDDSFSCPPKFLSSPTTGTTPKTSSYHLHWLSRDQALITLINATLSP 120
           VSSILKAH +FGHIDD+  CPPK L S T GT  + +  +L WLSRDQALITLINATLS 
Sbjct: 61  VSSILKAHSLFGHIDDTLPCPPKHLPSSTLGTNSEINPEYLQWLSRDQALITLINATLSS 120

Query: 121 SALAHVVGS 130
           SAL HVVGS
Sbjct: 121 SALTHVVGS 125

[Close]

BLAST of CsaV3_5G012380 vs. NCBI nr
Match: KAA0056771.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 169.1 bits (427), Expect = 2.6e-38
Identity = 92/129 (71.32%), Postives = 102/129 (79.07%), Query Frame = 0


Query: 1   MATSNSQFDLISTKTPNPIPTNSSPQNQFVPTSTLFLLSNICNFVPLRLDSTNYVLGKYQ 60
           MAT + Q DL  +KT NPIP +SS  N +VPTSTLFLLSNICN VP+RLDSTNYVL KYQ
Sbjct: 1   MATPSFQSDL--SKTSNPIPESSS--NPYVPTSTLFLLSNICNLVPIRLDSTNYVLWKYQ 60

Query: 61  VSSILKAHFVFGHIDDSFSCPPKFLSSPTTGTTPKTSSYHLHWLSRDQALITLINATLSP 120
           VSSILKAH +FGHIDD+  CPPK L S T GT  + +  +L WLSRDQALITLINATLS 
Sbjct: 61  VSSILKAHSLFGHIDDTLPCPPKHLPSSTLGTNSEINPKYLQWLSRDQALITLINATLSS 120

Query: 121 SALAHVVGS 130
           SAL HVVGS
Sbjct: 121 SALTHVVGS 125

[Close]

BLAST of CsaV3_5G012380 vs. NCBI nr
Match: KAA0067173.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK26022.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 168.3 bits (425), Expect = 4.4e-38
Identity = 93/131 (70.99%), Postives = 103/131 (78.63%), Query Frame = 0


Query: 1   MATSNSQFDLISTKTPNPIPTNSSPQNQFVPTSTLFLLSNICNFVPLRLDSTNYVLGKYQ 60
           MAT +SQ DL  ++T NPI  +SS  N FVPTSTLFLLSNICN VP+RLDSTNY+L KYQ
Sbjct: 1   MATPSSQSDL--SETSNPILESSS--NSFVPTSTLFLLSNICNLVPIRLDSTNYILWKYQ 60

Query: 61  VSSILKAHFVFGHIDDSFSCPPKFLSSPTTGTTPKTSSYHLHWLSRDQALITLINATLSP 120
           VSSILKAH  FGHIDD+  CPPK LSS T GT  + +  +L WLSR QALITLINATLS 
Sbjct: 61  VSSILKAHSFFGHIDDTLPCPPKHLSSSTLGTNSEINPEYLQWLSRSQALITLINATLSS 120

Query: 121 SALAHVVGSPS 132
           SALAHVVGS S
Sbjct: 121 SALAHVVGSVS 127

[Close]

BLAST of CsaV3_5G012380 vs. NCBI nr
Match: KAA0061282.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK09861.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 164.9 bits (416), Expect = 4.9e-37
Identity = 92/131 (70.23%), Postives = 100/131 (76.34%), Query Frame = 0


Query: 1   MATSNSQFDLISTKTPNPIPTNSSPQNQFVPTSTLFLLSNICNFVPLRLDSTNYVLGKYQ 60
           MAT +SQ DL  T   NPIP +SS  N  VPTSTLFLLSNICN VP+RLDSTNYVL KYQ
Sbjct: 1   MATPSSQSDLPGTS--NPIPESSS--NPSVPTSTLFLLSNICNLVPIRLDSTNYVLWKYQ 60

Query: 61  VSSILKAHFVFGHIDDSFSCPPKFLSSPTTGTTPKTSSYHLHWLSRDQALITLINATLSP 120
           VSSILKAH +FGHIDD+  CPPK L S T GT  + +  +L WLSRDQALITLIN TLS 
Sbjct: 61  VSSILKAHSLFGHIDDTLPCPPKHLPSSTLGTNSEINPEYLQWLSRDQALITLINDTLSS 120

Query: 121 SALAHVVGSPS 132
           SALAHVV S S
Sbjct: 121 SALAHVVSSVS 127

[Close]

BLAST of CsaV3_5G012380 vs. ExPASy TrEMBL
Match: A0A0A0KMJ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G272910 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 3.7e-67
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 1   MATSNSQFDLISTKTPNPIPTNSSPQNQFVPTSTLFLLSNICNFVPLRLDSTNYVLGKYQ 60
           MATSNSQFDLISTKTPNPIPTNSSPQNQFVPTSTLFLLSNICNFVPLRLDSTNYVLGKYQ
Sbjct: 1   MATSNSQFDLISTKTPNPIPTNSSPQNQFVPTSTLFLLSNICNFVPLRLDSTNYVLGKYQ 60

Query: 61  VSSILKAHFVFGHIDDSFSCPPKFLSSPTTGTTPKTSSYHLHWLSRDQALITLINATLSP 120
           VSSILKAHFVFGHIDDSFSCPPKFLSSPTTGTTPKTSSYHLHWLSRDQALITLINATLSP
Sbjct: 61  VSSILKAHFVFGHIDDSFSCPPKFLSSPTTGTTPKTSSYHLHWLSRDQALITLINATLSP 120

Query: 121 SALAHVVGSPS 132
           SALAHVVGSPS
Sbjct: 121 SALAHVVGSPS 131

[Close]

BLAST of CsaV3_5G012380 vs. ExPASy TrEMBL
Match: A0A5D3BEU0 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold690G00250 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.2e-38
Identity = 92/129 (71.32%), Postives = 102/129 (79.07%), Query Frame = 0


Query: 1   MATSNSQFDLISTKTPNPIPTNSSPQNQFVPTSTLFLLSNICNFVPLRLDSTNYVLGKYQ 60
           MAT + Q DL  +KT NPIP +SS  N +VPTSTLFLLSNICN VP+RLDSTNYVL KYQ
Sbjct: 1   MATPSFQSDL--SKTSNPIPESSS--NPYVPTSTLFLLSNICNLVPIRLDSTNYVLWKYQ 60

Query: 61  VSSILKAHFVFGHIDDSFSCPPKFLSSPTTGTTPKTSSYHLHWLSRDQALITLINATLSP 120
           VSSILKAH +FGHIDD+  CPPK L S T GT  + +  +L WLSRDQALITLINATLS 
Sbjct: 61  VSSILKAHSLFGHIDDTLPCPPKHLPSSTLGTNSEINPEYLQWLSRDQALITLINATLSS 120

Query: 121 SALAHVVGS 130
           SAL HVVGS
Sbjct: 121 SALTHVVGS 125

[Close]

BLAST of CsaV3_5G012380 vs. ExPASy TrEMBL
Match: A0A5A7UTE5 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold486G00610 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.2e-38
Identity = 92/129 (71.32%), Postives = 102/129 (79.07%), Query Frame = 0


Query: 1   MATSNSQFDLISTKTPNPIPTNSSPQNQFVPTSTLFLLSNICNFVPLRLDSTNYVLGKYQ 60
           MAT + Q DL  +KT NPIP +SS  N +VPTSTLFLLSNICN VP+RLDSTNYVL KYQ
Sbjct: 1   MATPSFQSDL--SKTSNPIPESSS--NPYVPTSTLFLLSNICNLVPIRLDSTNYVLWKYQ 60

Query: 61  VSSILKAHFVFGHIDDSFSCPPKFLSSPTTGTTPKTSSYHLHWLSRDQALITLINATLSP 120
           VSSILKAH +FGHIDD+  CPPK L S T GT  + +  +L WLSRDQALITLINATLS 
Sbjct: 61  VSSILKAHSLFGHIDDTLPCPPKHLPSSTLGTNSEINPKYLQWLSRDQALITLINATLSS 120

Query: 121 SALAHVVGS 130
           SAL HVVGS
Sbjct: 121 SALTHVVGS 125

[Close]

BLAST of CsaV3_5G012380 vs. ExPASy TrEMBL
Match: A0A5A7VGG0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1567G00280 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 2.1e-38
Identity = 93/131 (70.99%), Postives = 103/131 (78.63%), Query Frame = 0


Query: 1   MATSNSQFDLISTKTPNPIPTNSSPQNQFVPTSTLFLLSNICNFVPLRLDSTNYVLGKYQ 60
           MAT +SQ DL  ++T NPI  +SS  N FVPTSTLFLLSNICN VP+RLDSTNY+L KYQ
Sbjct: 1   MATPSSQSDL--SETSNPILESSS--NSFVPTSTLFLLSNICNLVPIRLDSTNYILWKYQ 60

Query: 61  VSSILKAHFVFGHIDDSFSCPPKFLSSPTTGTTPKTSSYHLHWLSRDQALITLINATLSP 120
           VSSILKAH  FGHIDD+  CPPK LSS T GT  + +  +L WLSR QALITLINATLS 
Sbjct: 61  VSSILKAHSFFGHIDDTLPCPPKHLSSSTLGTNSEINPEYLQWLSRSQALITLINATLSS 120

Query: 121 SALAHVVGSPS 132
           SALAHVVGS S
Sbjct: 121 SALAHVVGSVS 127

[Close]

BLAST of CsaV3_5G012380 vs. ExPASy TrEMBL
Match: A0A5A7UZE5 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold39G00300 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 2.4e-37
Identity = 92/131 (70.23%), Postives = 100/131 (76.34%), Query Frame = 0


Query: 1   MATSNSQFDLISTKTPNPIPTNSSPQNQFVPTSTLFLLSNICNFVPLRLDSTNYVLGKYQ 60
           MAT +SQ DL  T   NPIP +SS  N  VPTSTLFLLSNICN VP+RLDSTNYVL KYQ
Sbjct: 1   MATPSSQSDLPGTS--NPIPESSS--NPSVPTSTLFLLSNICNLVPIRLDSTNYVLWKYQ 60

Query: 61  VSSILKAHFVFGHIDDSFSCPPKFLSSPTTGTTPKTSSYHLHWLSRDQALITLINATLSP 120
           VSSILKAH +FGHIDD+  CPPK L S T GT  + +  +L WLSRDQALITLIN TLS 
Sbjct: 61  VSSILKAHSLFGHIDDTLPCPPKHLPSSTLGTNSEINPEYLQWLSRDQALITLINDTLSS 120

Query: 121 SALAHVVGSPS 132
           SALAHVV S S
Sbjct: 121 SALAHVVSSVS 127

The following BLAST results are available for this feature:

BLAST of CsaV3_5G012380 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN50818.1	7.7e-67	100.00	hypothetical protein Csa_018838 [Cucumis sativus]	[more]
TYJ97594.1	2.6e-38	71.32	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0056771.1	2.6e-38	71.32	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0067173.1	4.4e-38	70.99	retrotransposon protein [Cucumis melo var. makuwa] >TYK26022.1 retrotransposon p...	[more]
KAA0061282.1	4.9e-37	70.23	putative mitochondrial protein [Cucumis melo var. makuwa] >TYK09861.1 putative m...	[more]

BLAST of CsaV3_5G012380 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G012380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMJ5	3.7e-67	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G272910 PE=4 SV=1	[more]
A0A5D3BEU0	1.2e-38	71.32	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7UTE5	1.2e-38	71.32	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5A7VGG0	2.1e-38	70.99	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UZE5	2.4e-37	70.23	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of CsaV3_5G012380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR37610	FAMILY NOT NAMED	coord: 15..129
None	No IPR available	PANTHER	PTHR37610:SF56	GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 15..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G012380.1	CsaV3_5G012380.1	mRNA