Homology
BLAST of CsaV3_5G011200 vs. NCBI nr
Match:
NP_001267692.1 (RNA-dependent RNA polymerase 1-like [Cucumis sativus] >XP_031740799.1 RNA-dependent RNA polymerase 1-like isoform X1 [Cucumis sativus] >XP_031740800.1 RNA-dependent RNA polymerase 1-like isoform X1 [Cucumis sativus] >XP_031740801.1 RNA-dependent RNA polymerase 1-like isoform X1 [Cucumis sativus] >ADU77015.1 RNA-dependent RNA polymerase 1a [Cucumis sativus] >ALM88233.1 RNA-dependent RNA polymerase 1a [Cucumis sativus] >KAE8648062.1 hypothetical protein Csa_005834 [Cucumis sativus])
HSP 1 Score: 2313.1 bits (5993), Expect = 0.0e+00
Identity = 1130/1130 (100.00%), Postives = 1130/1130 (100.00%), Query Frame = 0
Query: 1 MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE
Sbjct: 1 MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
Query: 61 LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120
LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN
Sbjct: 61 LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120
Query: 121 VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180
VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY
Sbjct: 121 VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180
Query: 181 KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240
KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ
Sbjct: 181 KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240
Query: 241 NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL 300
NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL
Sbjct: 241 NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL 300
Query: 301 DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLD 360
DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLD
Sbjct: 301 DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLD 360
Query: 361 DGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLP 420
DGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLP
Sbjct: 361 DGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLP 420
Query: 421 RMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480
RMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY
Sbjct: 421 RMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480
Query: 481 IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGI 540
IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGI
Sbjct: 481 IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGI 540
Query: 541 GKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNTK 600
GKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNTK
Sbjct: 541 GKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNTK 600
Query: 601 LDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM 660
LDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM
Sbjct: 601 LDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM 660
Query: 661 SPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE 720
SPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE
Sbjct: 661 SPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE 720
Query: 721 TRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLKA 780
TRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLKA
Sbjct: 721 TRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLKA 780
Query: 781 VNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMDYTPAP 840
VNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMDYTPAP
Sbjct: 781 VNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMDYTPAP 840
Query: 841 PNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLELAKLFSVAV 900
PNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLELAKLFSVAV
Sbjct: 841 PNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLELAKLFSVAV 900
Query: 901 DFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTLSHIRSFTR 960
DFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTLSHIRSFTR
Sbjct: 901 DFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTLSHIRSFTR 960
Query: 961 DVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSIMRMSKS 1020
DVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSIMRMSKS
Sbjct: 961 DVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSIMRMSKS 1020
Query: 1021 FTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGCYNE 1080
FTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGCYNE
Sbjct: 1021 FTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGCYNE 1080
Query: 1081 GMKRDHYLSFPWCVYDKLMQIKENNLRRRERAARLASFDRFGHVLNLGGS 1131
GMKRDHYLSFPWCVYDKLMQIKENNLRRRERAARLASFDRFGHVLNLGGS
Sbjct: 1081 GMKRDHYLSFPWCVYDKLMQIKENNLRRRERAARLASFDRFGHVLNLGGS 1130
BLAST of CsaV3_5G011200 vs. NCBI nr
Match:
XP_008465250.1 (PREDICTED: RNA-dependent RNA polymerase 1 [Cucumis melo] >XP_008465251.1 PREDICTED: RNA-dependent RNA polymerase 1 [Cucumis melo] >XP_008465253.1 PREDICTED: RNA-dependent RNA polymerase 1 [Cucumis melo] >XP_008465254.1 PREDICTED: RNA-dependent RNA polymerase 1 [Cucumis melo] >KAA0067106.1 RNA-dependent RNA polymerase 1 [Cucumis melo var. makuwa] >TYJ97491.1 RNA-dependent RNA polymerase 1 [Cucumis melo var. makuwa])
HSP 1 Score: 2182.9 bits (5655), Expect = 0.0e+00
Identity = 1063/1129 (94.15%), Postives = 1093/1129 (96.81%), Query Frame = 0
Query: 1 MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE
Sbjct: 1 MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
Query: 61 LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120
LI+SLANQRLWYGSSYLKAR+TEVDIVPKP+TYMY L++LLLCFGCQVS+EKFRVLWEGN
Sbjct: 61 LIVSLANQRLWYGSSYLKARSTEVDIVPKPKTYMYMLKDLLLCFGCQVSSEKFRVLWEGN 120
Query: 121 VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180
VDLVTFGIGMRKMNFHLKY SVEYRLELSYE IWQIQLH P+ QSMKYLLIQL GAPRIY
Sbjct: 121 VDLVTFGIGMRKMNFHLKYNSVEYRLELSYENIWQIQLHSPQCQSMKYLLIQLYGAPRIY 180
Query: 181 KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240
KKVAP+SGQIFDNP+LNFF E DDQWVRTTDFTSSCSIGQSSSLCLKLPNG +LP FKQ
Sbjct: 181 KKVAPSSGQIFDNPILNFFMEVPDDQWVRTTDFTSSCSIGQSSSLCLKLPNGLELPTFKQ 240
Query: 241 NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL 300
NFAYYEEFEHEFRLIDEDA+FSFCRDLAPIVDSR HVLPY+I+FKINALVQ+GCIPW LL
Sbjct: 241 NFAYYEEFEHEFRLIDEDASFSFCRDLAPIVDSRPHVLPYEIIFKINALVQHGCIPWSLL 300
Query: 301 DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLD 360
D SFYRLVERIIT RIEFVEHALEKLFHLKECNYDPSNFLTEQ+R+YSRHPPNSPVISLD
Sbjct: 301 DTSFYRLVERIITIRIEFVEHALEKLFHLKECNYDPSNFLTEQFRRYSRHPPNSPVISLD 360
Query: 361 DGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLP 420
DGLVYVRRVQITPCKV+FCGPEVNVSNRVLRHFS+YIDNFLRVSFVDEEWDKMRSTDLLP
Sbjct: 361 DGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSKYIDNFLRVSFVDEEWDKMRSTDLLP 420
Query: 421 RMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480
RMSSKSED KTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY
Sbjct: 421 RMSSKSEDSKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480
Query: 481 IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGI 540
IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQ GE+KYVFSDGI
Sbjct: 481 IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQHGEVKYVFSDGI 540
Query: 541 GKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNTK 600
GKISSKFAKEVA KCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDN K
Sbjct: 541 GKISSKFAKEVATKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNIK 600
Query: 601 LDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM 660
LDVLGHSKYQPCFLNRQLITL+STLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM
Sbjct: 601 LDVLGHSKYQPCFLNRQLITLLSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM 660
Query: 661 SPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE 720
SPGENTNILKEMLKCGY+PDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE
Sbjct: 661 SPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE 720
Query: 721 TRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLKA 780
T TLEYGQVFVQIS GRHRNLSESFAFN G+EH LVIEG VTVAKNPCLHPGDVRVLKA
Sbjct: 721 TMTLEYGQVFVQISGGRHRNLSESFAFNS-GQEHCLVIEGKVTVAKNPCLHPGDVRVLKA 780
Query: 781 VNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMDYTPAP 840
VN+PGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIP RQI PMDYTPA
Sbjct: 781 VNVPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPPRQITPMDYTPAL 840
Query: 841 PNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLELAKLFSVAV 900
P ELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKE FKARSSPC+ELAK FS+AV
Sbjct: 841 PIELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSSPCVELAKQFSIAV 900
Query: 901 DFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTLSHIRSFTR 960
DFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYES VIGKLFRAVKDIAPTLSHI+ FTR
Sbjct: 901 DFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESKNVIGKLFRAVKDIAPTLSHIQPFTR 960
Query: 961 DVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSIMRMSKS 1020
DVARRCYDCDMEVEGFEDY EDAFYHKSNYD KLGNLLDYYGIKSEAE+LSGSIMRMSKS
Sbjct: 961 DVARRCYDCDMEVEGFEDYFEDAFYHKSNYDDKLGNLLDYYGIKSEAEILSGSIMRMSKS 1020
Query: 1021 FTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGCYNE 1080
FTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGCYNE
Sbjct: 1021 FTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGCYNE 1080
Query: 1081 GMKRDHYLSFPWCVYDKLMQIKENNLRRRERAARLASFDRFGHVLNLGG 1130
GMKRDHYLSFPWC+YDKLMQIKENNLR+RERAARLA+FDRFGHVLNLGG
Sbjct: 1081 GMKRDHYLSFPWCIYDKLMQIKENNLRKRERAARLATFDRFGHVLNLGG 1128
BLAST of CsaV3_5G011200 vs. NCBI nr
Match:
NP_001315397.1 (RNA-dependent RNA polymerase 1 [Cucumis melo] >ALM88236.1 RNA-dependent RNA polymerase 1a [Cucumis melo])
HSP 1 Score: 2176.0 bits (5637), Expect = 0.0e+00
Identity = 1061/1130 (93.89%), Postives = 1094/1130 (96.81%), Query Frame = 0
Query: 1 MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE
Sbjct: 1 MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
Query: 61 LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120
LI+SLANQRLWYGSSYLKAR+TEVDIVPKP+TYMYTL++LLLCFGCQVS+EKFRVLWEGN
Sbjct: 61 LIVSLANQRLWYGSSYLKARSTEVDIVPKPKTYMYTLKDLLLCFGCQVSSEKFRVLWEGN 120
Query: 121 VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180
VDLVTFGIGMRKMNFHLKY SVEYRLELSYE IWQIQLH P+ QSMKYLLIQL GAPRIY
Sbjct: 121 VDLVTFGIGMRKMNFHLKYNSVEYRLELSYENIWQIQLHSPQCQSMKYLLIQLYGAPRIY 180
Query: 181 KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240
KKVAP+SGQIFDNP+LNFF E DDQWVRTTDFTSSCSIGQSSSLCLKLPNG +LP FKQ
Sbjct: 181 KKVAPSSGQIFDNPILNFFMEVPDDQWVRTTDFTSSCSIGQSSSLCLKLPNGLELPTFKQ 240
Query: 241 NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL 300
NFAYYEEFEHEFRLIDE A+FSFCRDLAPIVDSR HVLPY+I+FKINALVQ+GCIPW LL
Sbjct: 241 NFAYYEEFEHEFRLIDEGASFSFCRDLAPIVDSRPHVLPYEIIFKINALVQHGCIPWSLL 300
Query: 301 DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLD 360
D SFYRLVERIIT RIEFVEHALEKLFHLKECNYDPSNFLTEQ+R+YSRHPPNSPVISLD
Sbjct: 301 DTSFYRLVERIITIRIEFVEHALEKLFHLKECNYDPSNFLTEQFRRYSRHPPNSPVISLD 360
Query: 361 DGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLP 420
DGLVYVRRVQITPCKV+FCGPEVNVSNRVLRHFS+YIDNFLRVSFVDEEWDKMRSTDLLP
Sbjct: 361 DGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSKYIDNFLRVSFVDEEWDKMRSTDLLP 420
Query: 421 RMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480
RMSSKSED KTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY
Sbjct: 421 RMSSKSEDSKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480
Query: 481 IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGI 540
IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQ GE+KYVFSDGI
Sbjct: 481 IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQHGEVKYVFSDGI 540
Query: 541 GKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNTK 600
GKISSKFAKEVA KCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDN K
Sbjct: 541 GKISSKFAKEVATKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNIK 600
Query: 601 LDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM 660
LDVLGHSKYQPCFLNRQLITL+STLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM
Sbjct: 601 LDVLGHSKYQPCFLNRQLITLLSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM 660
Query: 661 SPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE 720
SPGENTNILKEMLKCGY+PDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE
Sbjct: 661 SPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE 720
Query: 721 TRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLKA 780
T TLEYGQVFVQIS GRHRNLSESFAFN G+EH LVIEG VTVAKNPCLHPGDVRVLKA
Sbjct: 721 TMTLEYGQVFVQISGGRHRNLSESFAFNS-GQEHCLVIEGKVTVAKNPCLHPGDVRVLKA 780
Query: 781 VNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMDYTPAP 840
VN+PGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIP R+I PMDYTPA
Sbjct: 781 VNVPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPPRRITPMDYTPAL 840
Query: 841 PNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLELAKLFSVAV 900
P ELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKE FKARSSPC+ELAK FS+AV
Sbjct: 841 PIELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSSPCVELAKQFSIAV 900
Query: 901 DFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTLSHIRSFTR 960
DFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYES VIGKLFRAVKDIAPTLSHI+ FTR
Sbjct: 901 DFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESKNVIGKLFRAVKDIAPTLSHIQPFTR 960
Query: 961 DVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSIMRMSKS 1020
DVARRCYDCDMEVEGFEDYVEDAFYHKSNYD KLGNLLDYYGIKSEAE+LSGSIMRMSKS
Sbjct: 961 DVARRCYDCDMEVEGFEDYVEDAFYHKSNYDDKLGNLLDYYGIKSEAEILSGSIMRMSKS 1020
Query: 1021 FTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGCYNE 1080
FTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWG YNE
Sbjct: 1021 FTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGYYNE 1080
Query: 1081 GMKRDHYLSFPWCVYDKLMQIKENNLRRRERAARLASFDRFGHVLNLGGS 1131
GMKRD+YLSFPWC+YDKLMQIKENNLR+RERAARLA+FDRFG+VLNLGGS
Sbjct: 1081 GMKRDYYLSFPWCIYDKLMQIKENNLRKRERAARLATFDRFGYVLNLGGS 1129
BLAST of CsaV3_5G011200 vs. NCBI nr
Match:
XP_038891504.1 (RNA-dependent RNA polymerase 1 isoform X1 [Benincasa hispida] >XP_038891505.1 RNA-dependent RNA polymerase 1 isoform X2 [Benincasa hispida])
HSP 1 Score: 2037.7 bits (5278), Expect = 0.0e+00
Identity = 998/1133 (88.08%), Postives = 1059/1133 (93.47%), Query Frame = 0
Query: 1 MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
MGKT+HISGFPS+VTADAVK+FLEG TG GTVYAIKVR PKRGG R+YAIVQFTSATQAE
Sbjct: 1 MGKTVHISGFPSNVTADAVKSFLEGRTGVGTVYAIKVRAPKRGGARVYAIVQFTSATQAE 60
Query: 61 LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120
LIISLANQ LWYGSSYLKARA EVDIVPKPRTYMYTLE+L LCFGCQVS+EKFRVLWEG+
Sbjct: 61 LIISLANQSLWYGSSYLKARAAEVDIVPKPRTYMYTLEDLPLCFGCQVSSEKFRVLWEGD 120
Query: 121 VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180
+DLVTFGIGMRKMNFHLK+ SV+YRLELSYE IWQIQLH P+ +SMKYL+IQL GAPRIY
Sbjct: 121 IDLVTFGIGMRKMNFHLKHNSVKYRLELSYENIWQIQLHHPQHRSMKYLIIQLYGAPRIY 180
Query: 181 KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240
K VAP S QIFD+PL NFF E DDQW+RT DFT SCSIGQSSSLCLKLPN QLP F+Q
Sbjct: 181 KNVAPCSVQIFDDPLFNFFMEVPDDQWIRTADFTPSCSIGQSSSLCLKLPNRCQLPNFRQ 240
Query: 241 NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL 300
NFAYYEEFE+EF+L+D DA+FSFCRDLAPIVDSR HVLPY+I+FKINALVQ+GCIPWPL+
Sbjct: 241 NFAYYEEFENEFQLVDGDASFSFCRDLAPIVDSRPHVLPYEIMFKINALVQHGCIPWPLI 300
Query: 301 DASFYRLVE--RIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVIS 360
D SFYRLV+ RI RIEFVEHALEKLFHLKEC+Y+PS+F+TEQYRKYSRHPPNSP IS
Sbjct: 301 DTSFYRLVDPRRI---RIEFVEHALEKLFHLKECSYEPSSFITEQYRKYSRHPPNSPAIS 360
Query: 361 LDDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDL 420
LD GLVYVRRVQITPCKV+FCGPEVNVSNRVLRHF Q DNFLRVSFVDEEWDKMRSTDL
Sbjct: 361 LDAGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFPQDTDNFLRVSFVDEEWDKMRSTDL 420
Query: 421 LPRMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDA 480
LPRMS SED KTDIY+RILSVL+NGIVIGDKTFQFLAFSSSQLRDNSLWMFAS P +DA
Sbjct: 421 LPRMSPTSEDSKTDIYKRILSVLRNGIVIGDKTFQFLAFSSSQLRDNSLWMFASRPGLDA 480
Query: 481 AYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSD 540
A IRAWMGDFRHIKNPAKYAARLGQSFGSSTE LSVA +EREIIPDIE+Q GE+KYVFSD
Sbjct: 481 ADIRAWMGDFRHIKNPAKYAARLGQSFGSSTETLSVARDEREIIPDIELQHGEVKYVFSD 540
Query: 541 GIGKISSKFAKEVAAKCGFQ-AVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESD 600
GIGKIS+ FAK+VAAKCGFQ + PSAFQIRYGGYKGVVAVDP+S+IKLSLRKSMCKFESD
Sbjct: 541 GIGKISNDFAKKVAAKCGFQGSTPSAFQIRYGGYKGVVAVDPHSSIKLSLRKSMCKFESD 600
Query: 601 NTKLDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEAL 660
NTKLDVLG+SKYQPCFLNRQLITL+STLGVRDEIFE KQ EAVEQLDAILTDPLKA+EAL
Sbjct: 601 NTKLDVLGYSKYQPCFLNRQLITLLSTLGVRDEIFENKQREAVEQLDAILTDPLKAREAL 660
Query: 661 ELMSPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGC 720
ELM+PGENTNILKEMLKCGY+PDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGC
Sbjct: 661 ELMAPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGC 720
Query: 721 LDETRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRV 780
LDETRTLEYGQVFVQISS R RNLS+SFAFN G EH LVIEGNVTVAKNPCLHPGDVRV
Sbjct: 721 LDETRTLEYGQVFVQISSARRRNLSDSFAFNMSGPEHRLVIEGNVTVAKNPCLHPGDVRV 780
Query: 781 LKAVNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMDYT 840
LKAVNIP LYH+VDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIP RQIPPMDYT
Sbjct: 781 LKAVNIPWLYHLVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPPRQIPPMDYT 840
Query: 841 PAPPNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLELAKLFS 900
PAPP +LDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKE FKAR SPC+ELAKLFS
Sbjct: 841 PAPPIQLDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKEPFKARGSPCVELAKLFS 900
Query: 901 VAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTLSHIRS 960
+AVDFPKTGVPAIIP HLYVKEFPDFMEKPD+PSYES VIGKLFRAVKDIAPTLS+IRS
Sbjct: 901 IAVDFPKTGVPAIIPPHLYVKEFPDFMEKPDKPSYESKNVIGKLFRAVKDIAPTLSYIRS 960
Query: 961 FTRDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSIMRM 1020
FTRDVA +CYD DMEVEGFEDYV DAFYHKSNYDYKLGNLLDYYGIKSEAE+LSGSIMRM
Sbjct: 961 FTRDVAMQCYDSDMEVEGFEDYVGDAFYHKSNYDYKLGNLLDYYGIKSEAEILSGSIMRM 1020
Query: 1021 SKSFTRRRDAEAINLAVRSLRKEARTWFNARE-GADSNSDDLFAKASAWYYVTYHHSYWG 1080
SKSFTRRRDAEAINLAVRSLRKEARTWFNARE G++S+SDDLFAKASAWY+VTYHHSYWG
Sbjct: 1021 SKSFTRRRDAEAINLAVRSLRKEARTWFNAREGGSNSDSDDLFAKASAWYHVTYHHSYWG 1080
Query: 1081 CYNEGMKRDHYLSFPWCVYDKLMQIKENNLRRRERAARLASFDRFGHVLNLGG 1130
CYNE MKRDHYLSFPWCVYDKLMQIKE NLR+RERA RLA+ DRFGH LNLGG
Sbjct: 1081 CYNEEMKRDHYLSFPWCVYDKLMQIKEKNLRKRERALRLATLDRFGHALNLGG 1130
BLAST of CsaV3_5G011200 vs. NCBI nr
Match:
XP_031740802.1 (RNA-dependent RNA polymerase 1-like isoform X2 [Cucumis sativus])
HSP 1 Score: 1960.7 bits (5078), Expect = 0.0e+00
Identity = 958/958 (100.00%), Postives = 958/958 (100.00%), Query Frame = 0
Query: 173 LSGAPRIYKKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNG 232
LSGAPRIYKKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNG
Sbjct: 28 LSGAPRIYKKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNG 87
Query: 233 RQLPPFKQNFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQY 292
RQLPPFKQNFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQY
Sbjct: 88 RQLPPFKQNFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQY 147
Query: 293 GCIPWPLLDASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPP 352
GCIPWPLLDASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPP
Sbjct: 148 GCIPWPLLDASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPP 207
Query: 353 NSPVISLDDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDK 412
NSPVISLDDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDK
Sbjct: 208 NSPVISLDDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDK 267
Query: 413 MRSTDLLPRMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFAS 472
MRSTDLLPRMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFAS
Sbjct: 268 MRSTDLLPRMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFAS 327
Query: 473 GPDIDAAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEI 532
GPDIDAAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEI
Sbjct: 328 GPDIDAAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEI 387
Query: 533 KYVFSDGIGKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMC 592
KYVFSDGIGKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMC
Sbjct: 388 KYVFSDGIGKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMC 447
Query: 593 KFESDNTKLDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLK 652
KFESDNTKLDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLK
Sbjct: 448 KFESDNTKLDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLK 507
Query: 653 AQEALELMSPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGR 712
AQEALELMSPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGR
Sbjct: 508 AQEALELMSPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGR 567
Query: 713 AMMGCLDETRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHP 772
AMMGCLDETRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHP
Sbjct: 568 AMMGCLDETRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHP 627
Query: 773 GDVRVLKAVNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIP 832
GDVRVLKAVNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIP
Sbjct: 628 GDVRVLKAVNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIP 687
Query: 833 PMDYTPAPPNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLEL 892
PMDYTPAPPNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLEL
Sbjct: 688 PMDYTPAPPNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLEL 747
Query: 893 AKLFSVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTL 952
AKLFSVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTL
Sbjct: 748 AKLFSVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTL 807
Query: 953 SHIRSFTRDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSG 1012
SHIRSFTRDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSG
Sbjct: 808 SHIRSFTRDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSG 867
Query: 1013 SIMRMSKSFTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHH 1072
SIMRMSKSFTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHH
Sbjct: 868 SIMRMSKSFTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHH 927
Query: 1073 SYWGCYNEGMKRDHYLSFPWCVYDKLMQIKENNLRRRERAARLASFDRFGHVLNLGGS 1131
SYWGCYNEGMKRDHYLSFPWCVYDKLMQIKENNLRRRERAARLASFDRFGHVLNLGGS
Sbjct: 928 SYWGCYNEGMKRDHYLSFPWCVYDKLMQIKENNLRRRERAARLASFDRFGHVLNLGGS 985
BLAST of CsaV3_5G011200 vs. ExPASy Swiss-Prot
Match:
Q9LQV2 (RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1)
HSP 1 Score: 1423.7 bits (3684), Expect = 0.0e+00
Identity = 722/1133 (63.72%), Postives = 870/1133 (76.79%), Query Frame = 0
Query: 1 MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
MGKTI + GFP+ V+A+ VK FLE TG GTVYAIKVR PK+GG R+YAIVQFTS
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 60
Query: 61 LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120
LII+ A +RL+YG SYLKA E DIVPKPR ++T+ L + FGCQVST+KF LW
Sbjct: 61 LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 120
Query: 121 VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180
V+FGIGMRK++F + +YRLELSYE IWQI LH P+ +S K+L+IQ+ GAP+I+
Sbjct: 121 DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKIF 180
Query: 181 KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240
+K +F +++F+ + SD+QW+RTTDFTSS IGQS++ CL+LP +P F++
Sbjct: 181 EKEDQPINLLFG--IMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRE 240
Query: 241 NFAYYEEFEHEFRLIDEDANFSF-CRDLAPIVD-SRSHVLPYKILFKINALVQYGCIPWP 300
NFA Y E LI+ +++S L P+VD LP++ILFK+N LVQ C+ P
Sbjct: 241 NFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGP 300
Query: 301 LLDASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKY--SRHPPNSPV 360
LD FYRL+ + R ++H LEKLFHL EC Y+P+++L ++Y+K+ P SP
Sbjct: 301 ALDLDFYRLLNQKKYDR-ALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPT 360
Query: 361 ISLDDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRST 420
ISLDDGLVY+ RVQ+TP +V+F GPEVNVSNRVLRH+S+YI+NFLRVSFVDE+ +K+RS
Sbjct: 361 ISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSM 420
Query: 421 DLLPRMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDI 480
DL PR S++ +T +Y RI SVL++GIVIGDK F+FLAFSSSQLR+NS WMFA I
Sbjct: 421 DLSPRSSTQR---RTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDRI 480
Query: 481 DAAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVF 540
AA+IRAWMGDF HI+N AKYAARLGQSF SS E L+V S+E E+IPD+E+ +YVF
Sbjct: 481 TAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVF 540
Query: 541 SDGIGKISSKFAKEVAAKCGF-QAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFE 600
SDGIGKIS++FA++VA KCG + PSAFQIRYGGYKGVVAVDP S+ KLSLRKSM KFE
Sbjct: 541 SDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFE 600
Query: 601 SDNTKLDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQE 660
S+NTKLDVL SKYQPC++NRQLITL+STLGV D +FEKKQ E V++LDAILT PL+A E
Sbjct: 601 SENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHE 660
Query: 661 ALELMSPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMM 720
AL LM+PGENTNILK ++ CGY+PD EP+LSMMLQ FRASKLLELRTK+RIFI GR+MM
Sbjct: 661 ALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMM 720
Query: 721 GCLDETRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDV 780
GCLDETRTLEYGQV VQ S R GR +I G V VAKNPCLHPGDV
Sbjct: 721 GCLDETRTLEYGQVVVQYSDPM-----------RPGR--RFIITGPVVVAKNPCLHPGDV 780
Query: 781 RVLKAVNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMD 840
RVL+AVN+P L HMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWD EL+P R PMD
Sbjct: 781 RVLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMD 840
Query: 841 YTPAPPNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLELAKL 900
YTP P LD DVT E+++EYF NY+VNDSLGIIANAHTAFADKE KA S PC+ELAK
Sbjct: 841 YTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKK 900
Query: 901 FSVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTLSHI 960
FS AVDFPKTGV A+IP HLYVKE+PDFMEKPD+P+YES VIGKLFR VK+ AP L I
Sbjct: 901 FSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISI 960
Query: 961 RSFTRDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSIM 1020
+SFT DVA + YD DMEV+GFE+YV++AFY K+NYD+KLGNL+DYYGIK+EAE+LSG IM
Sbjct: 961 KSFTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGIM 1020
Query: 1021 RMSKSFTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYW 1080
RMSKSFT+RRDAE+I AVR+LRKE + FNA E ++ S AKASAWY+VTYH SYW
Sbjct: 1021 RMSKSFTKRRDAESIGRAVRALRKETLSLFNASEEEENES----AKASAWYHVTYHSSYW 1080
Query: 1081 GCYNEGMKRDHYLSFPWCVYDKLMQIKENNLRRRERAARLASFDRFGHVLNLG 1129
G YNEG+ RDH+LSF WCVYDKL++IK+ NL RR+R L +R HVL G
Sbjct: 1081 GLYNEGLNRDHFLSFAWCVYDKLVRIKKTNLGRRQRQETL---ERLDHVLRFG 1107
BLAST of CsaV3_5G011200 vs. ExPASy Swiss-Prot
Match:
Q0DXS3 (Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR1 PE=2 SV=2)
HSP 1 Score: 956.8 bits (2472), Expect = 2.1e-277
Identity = 477/745 (64.03%), Postives = 579/745 (77.72%), Query Frame = 0
Query: 376 VFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLPRMSSKSEDGKTDIYR 435
V+F GPE+NVSNRV+R+FS I+NFLR+SFVDE+ +K+R+TDL PR +S + +T +Y+
Sbjct: 9 VYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSASGHDANRTALYK 68
Query: 436 RILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAYIRAWMGDFRHIKNPA 495
R+LSVL +GI IG K F+FLAFSSSQLRDNS WMFAS + A+ IR WMGDFR+I+N A
Sbjct: 69 RVLSVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNIRNVA 128
Query: 496 KYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGIGKISSKFAKEVAAKC 555
KYAARLGQSF SSTE L V E E I DI + ++VFSDGIGKISS FA EVA KC
Sbjct: 129 KYAARLGQSFSSSTETLKVQKYEVEEISDI---KNGTQHVFSDGIGKISSAFANEVAMKC 188
Query: 556 GFQA-VPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNTKLDVLGHSKYQPCFL 615
+ PSAFQIRYGGYKGVVAVDP S KLSLRKSM KF+SDN +DVL +SKYQP FL
Sbjct: 189 NLKRFAPSAFQIRYGGYKGVVAVDPTSRWKLSLRKSMLKFQSDNITVDVLAYSKYQPGFL 248
Query: 616 NRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELMSPGENTNILKEMLK 675
NRQLITL+STLGVRD +FE+KQ EAV QL+ ++TDP A EA+ELM GE TN +KE+L
Sbjct: 249 NRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVKELLL 308
Query: 676 CGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDETRTLEYGQVFVQIS 735
CGYQPD EPYLSM+LQTFRASKLLEL+TKSRI IP GRAMMGCLDETRTL+YGQVF++ +
Sbjct: 309 CGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVFIRAT 368
Query: 736 SGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLKAVNIPGLYHMVDCVV 795
SG + N + G V +AKNPCLHPGD+R+L AV++P L+HM +CVV
Sbjct: 369 SGVNDN-------------DRFTVTGKVVIAKNPCLHPGDIRILHAVDVPVLHHMFNCVV 428
Query: 796 FPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMDYTPAPPNELDRDVTTEDIQ 855
FPQ+G RPHPNECSGSDLDGDIYFV WD LIP R + PMDYTPAP LD DVT E+++
Sbjct: 429 FPQQGPRPHPNECSGSDLDGDIYFVSWDPSLIPPRMVTPMDYTPAPTETLDHDVTIEEVE 488
Query: 856 EYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLELAKLFSVAVDFPKTGVPAIIPSH 915
EYF NY+VN+SLG+IANAH FADKE KA SSPC+ELAKLFS+AVDFPKTGVPA+IP
Sbjct: 489 EYFTNYIVNESLGMIANAHVVFADKEDLKAESSPCIELAKLFSIAVDFPKTGVPALIPPE 548
Query: 916 LYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTLSHIRSFTRDVARRCYDCDMEVE 975
L+VKE+PDFMEK D+ +YES VIGKL+R +K P HI+ FTR+VARR YD DM V+
Sbjct: 549 LHVKEYPDFMEKLDKVTYESKGVIGKLYREIKKHTP---HIKHFTREVARRSYDTDMIVD 608
Query: 976 GFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSIMRMSKSFTRRRDAEAINLAV 1035
G+EDY+ +A K YD+KLGNL+D+YGIKSEAE++SG I++M+K+FT++ DA+AI LAV
Sbjct: 609 GYEDYITEAMALKDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTKKSDADAIRLAV 668
Query: 1036 RSLRKEARTWFNAREGADS--NSDDLFAKASAWYYVTYHHSYWGCYNEGMKRDHYLSFPW 1095
RSLRKEAR+ F+ D+ D AKASAWY+VTYH +WGCYNEG +R H++SFPW
Sbjct: 669 RSLRKEARSRFSEMSLDDNGHGHDASEAKASAWYHVTYHPEFWGCYNEGYERPHFISFPW 728
Query: 1096 CVYDKLMQIKENNLRRRERAARLAS 1118
C+Y+KL++IK+ R+ L S
Sbjct: 729 CIYEKLLRIKQRRKFVRKMQPELFS 734
BLAST of CsaV3_5G011200 vs. ExPASy Swiss-Prot
Match:
O82504 (RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=RDR2 PE=1 SV=1)
HSP 1 Score: 771.2 bits (1990), Expect = 1.7e-221
Identity = 458/1135 (40.35%), Postives = 661/1135 (58.24%), Query Frame = 0
Query: 4 TIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGG--GRLYAIVQFTS---ATQ 63
T+ IS P + AD + FLE H G TV+A+++ P R R +A VQFT+ ++
Sbjct: 11 TVKISNVPQTIVADELLRFLELHLGEDTVFALEI-PTTRDNWKPRDFARVQFTTLEVKSR 70
Query: 64 AELIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEK-FRVL- 123
A+L+ S +L + + L+ DI+P+P L++++L G S EK F L
Sbjct: 71 AQLLSS--QSKLLFKTHNLRLSEAYDDIIPRPVDPRKRLDDIVLTVGFPESDEKRFCALE 130
Query: 124 -WEGNVDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKY--LLIQL 183
W+G + R++ F + Y++E+ +E I + C + + L++L
Sbjct: 131 KWDGVRCWIL--TEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDASEIDAFLLKL 190
Query: 184 SGAPRIYKKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGR 243
P+++K+V + F + F KE D W+RTTDF+ S SIG S+ CL++ NG
Sbjct: 191 KYGPKVFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLEVHNGS 250
Query: 244 QLPPFKQNFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVL--PYKILFKINALVQ 303
+ YY E +D F+ + P++++ L PY+ILF++NALV
Sbjct: 251 TMLDIFSGLPYYREDTLSLTYVD-GKTFASAAQIVPLLNAAILGLEFPYEILFQLNALVH 310
Query: 304 YGCIPWPLLDASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYR---KYS 363
I L AS L++ + +E L+KL YDP F+ Q + K
Sbjct: 311 AQKI--SLFAASDMELIKILRGMSLETALVILKKLHQQSSICYDPVFFVKTQMQSVVKKM 370
Query: 364 RHPPNSPVISL-DDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVD 423
+H P S L + ++ +R +TP K++ GPE+ +N V+++F++++ +F+RV+FV+
Sbjct: 371 KHSPASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTFVE 430
Query: 424 EEWDKMRSTDLLPRMSSKSEDG------KTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQ 483
E+W K+ + L S S++G +T+IY R+LS+L GI +G K F+FLAFS+SQ
Sbjct: 431 EDWSKLPANAL----SVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSASQ 490
Query: 484 LRDNSLWMFASGPDIDAAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREI 543
LR NS+WMFAS + A IR WMG FR I++ +K AAR+GQ F +S + L V + + E
Sbjct: 491 LRGNSVWMFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVEQ 550
Query: 544 IPDIEVQQGEIKYVFSDGIGKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYS 603
IPDIEV Y FSDGIGKIS FAK+VA KCG VPSAFQIRYGGYKGV+AVD S
Sbjct: 551 IPDIEVTTDGADYCFSDGIGKISLAFAKQVAQKCGLSHVPSAFQIRYGGYKGVIAVDRSS 610
Query: 604 TIKLSLRKSMCKFESDNTKLDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVE 663
KLSLR SM KF+S+N L+V ++ PCFLNR++I L+STLG+ D +FE Q+ +
Sbjct: 611 FRKLSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHLS 670
Query: 664 QLDAILTDPLKAQEALELMSPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELR 723
L +L D A L+ +S + N+L +ML GY P EPYLSMML+ S+L EL+
Sbjct: 671 MLGNMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELK 730
Query: 724 TKSRIFIPNGRAMMGCLDETRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGN 783
++ RI +P GR ++GC+DE LEYGQV+V+++ + S ++ R E V+ G
Sbjct: 731 SRCRILVPKGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEETSVVIGK 790
Query: 784 VTVAKNPCLHPGDVRVLKAVNIPGLYH--MVDCVVFPQKGSRPHPNECSGSDLDGDIYFV 843
V V KNPCLHPGD+RVL A+ +DC++FPQKG RPHPNECSG DLDGD +FV
Sbjct: 791 VVVTKNPCLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQFFV 850
Query: 844 CWDTELIPSRQIPPMDYTPAPPNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADK 903
WD ++IPS PPMDY + P +D DVT E+I ++FV+YM++D+LG+I+ AH AD+
Sbjct: 851 SWDEKIIPSEMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHADR 910
Query: 904 ELFKARSSPCLELAKLFSVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIG 963
+ KARS CLELA L S AVDF KTG PA +P L +EFPDF+E+ ++P+Y S V G
Sbjct: 911 DPEKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISESVFG 970
Query: 964 KLFRAVKDIAPTLSHIRSFTRDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLD 1023
KL+RAVK +L+ + YD +E GFE ++E A H+ Y KL +L+
Sbjct: 971 KLYRAVKS---SLAQRKPEAESEDTVAYDVTLEEAGFESFIETAKAHRDMYGEKLTSLMI 1030
Query: 1024 YYGIKSEAEVLSGSI----MRMSKSFTRRRD-AEAINLAVRSLRKEARTWFNAREGADSN 1083
YYG +E E+L+G + M +++ R D + I L+V+ L KEA WF E + +
Sbjct: 1031 YYGAANEEEILTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWF---EKSCED 1090
Query: 1084 SDDLFAKASAWYYVTYHHSYWGCYNEGMKRDHYLSFPWCVYDKLMQIKENNLRRR 1110
ASAWYYVTY+ N ++ +LSFPW V D L+ IK N +R+
Sbjct: 1091 EQQKKKLASAWYYVTYNP------NHRDEKLTFLSFPWIVGDVLLDIKAENAQRQ 1121
BLAST of CsaV3_5G011200 vs. ExPASy Swiss-Prot
Match:
Q7XM31 (Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR2 PE=2 SV=1)
HSP 1 Score: 739.2 bits (1907), Expect = 7.0e-212
Identity = 442/1130 (39.12%), Postives = 654/1130 (57.88%), Query Frame = 0
Query: 11 PSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGG-GRLYAIVQFTSATQAELIISLANQ- 70
PS V A+ + F G +A ++ RG R + VQF SA A LA+
Sbjct: 19 PSAVAAELLAFFDSAVAVAGGAFACEIAAAHRGWLSRGHGTVQFGSAAAAAAAAGLASSG 78
Query: 71 RL-WYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRV--LWEG-NVDLV 130
RL + + L + VD++P+ L G +V+ F W+G +++
Sbjct: 79 RLPRFLGALLSVSPSPVDLLPRASDLSLRAAGAGLVVGDRVAERVFEAADAWDGVRAEVI 138
Query: 131 TFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIYKKVA 190
G R+++ +L++ S Y+LE+ +E + L C D M +L+QL+ APRI+ ++
Sbjct: 139 P---GKRRVDLYLEHDSQRYKLEVLFEDMKDC-LGCTLD-GMGAILLQLNYAPRIHTAIS 198
Query: 191 -PNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQNFA 250
P F + + KE + WVR DFT + S G+ S+L LKL + ++
Sbjct: 199 GPAVNSRFMDDRFHACKEDAKFSWVRALDFTPNYSFGRCSTLVLKLGKSALVSDILKSLP 258
Query: 251 YYEEFEHEFRLIDEDANFSFCRDLAPIVD-SRSHVLPYKILFKINALVQYGCIPWPLLDA 310
+ E + D ++ P+V R + +PY++LF++N+L+ G I ++A
Sbjct: 259 FSGNL-GELTMNSMD-GVGASSNVVPLVHCPRDYSVPYEVLFRLNSLMHMGKIVAKHVNA 318
Query: 311 SFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLDD- 370
++ ++ + ++ EK+ L+ Y P F+ Q YS ++ ++S +
Sbjct: 319 DLFKALQEL---PVDVSRRIFEKMHKLESTCYGPLQFI--QQEAYSMKRSHNVLLSNEGE 378
Query: 371 -----GLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRST 430
L+ RV ITP K+F GPE V+N V++H S Y +F+RV+FVDE+W K+ S
Sbjct: 379 GEGERKLMKCYRVNITPSKIFCFGPEEEVTNYVVKHHSAYASDFVRVTFVDEDWSKLSSN 438
Query: 431 DLLPRMSSK--SEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGP 490
+ R+ S+ KT +Y RILS+LK G IG K F+FLAFS+SQLR NS+WMFAS
Sbjct: 439 AISARIEQGFFSKPFKTGLYYRILSILKKGFSIGPKNFEFLAFSASQLRGNSVWMFASNA 498
Query: 491 DIDAAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKY 550
++A IR WMG F +I++ +K AAR+GQ F SS + V + E+IPDIE+ KY
Sbjct: 499 SLNAGGIRRWMGHFENIRSVSKCAARMGQLFSSSRQTFEVLRWDVEVIPDIEITTDGSKY 558
Query: 551 VFSDGIGKISSKFAKEVAAKCGFQA--VPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMC 610
+FSDGIGKIS +FAK VA G +PSAFQIRYGGYKGV+A+DP S+I LSLR SM
Sbjct: 559 IFSDGIGKISLRFAKRVAHHVGLDPTNLPSAFQIRYGGYKGVIAIDPMSSIDLSLRPSMK 618
Query: 611 KFESDNTKLDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLK 670
KFES++ L++ SK QPC++NR++I+L+STLG+RDEIF Q + + + + +LT+
Sbjct: 619 KFESESRMLNITSWSKSQPCYVNREIISLLSTLGIRDEIFVAMQQDEMRETEEMLTNKEV 678
Query: 671 AQEALELMSPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGR 730
A L + G T +ML GY+P EPYLSM+L+ + ++L ++RT+ +I +P GR
Sbjct: 679 ALSVLGKLG-GSETKTAVKMLLQGYEPSSEPYLSMILKAHQENRLTDIRTRCKIHVPKGR 738
Query: 731 AMMGCLDETRTLEYGQVFVQI--SSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCL 790
++GCLDET LEYGQV+++I +S ++ ++S+ +N G+ +V G V + KNPCL
Sbjct: 739 VLIGCLDETGVLEYGQVYIRITKNSKEQKDSNQSYFYNDDGKTATVV--GKVAITKNPCL 798
Query: 791 HPGDVRVLKAVNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQ 850
HPGD+RVL+A+ P L MVDC+VFPQ+G RPHPNECSG DLDGD+YF+ WD +LIP +
Sbjct: 799 HPGDIRVLEAIYDPDLVGMVDCLVFPQRGERPHPNECSGGDLDGDLYFITWDDKLIPEKV 858
Query: 851 IPPMDYTPAPPNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCL 910
PMDYT P +D VT E+IQ++FV+YM+NDSLG I+ AH AD+ KARS CL
Sbjct: 859 DTPMDYTATRPRIMDHVVTLEEIQKHFVDYMINDSLGAISTAHLIHADRSPLKARSPECL 918
Query: 911 ELAKLFSVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAP 970
+LA L S+AVDF KTG PA +P L +E+PDFME+ ++P Y SN V+GKL+R+
Sbjct: 919 QLATLHSMAVDFAKTGAPAEMPRTLRPREYPDFMERWEKPMYISNGVLGKLYRSAMGHME 978
Query: 971 TLSHIRSFTRDVAR--RCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAE 1030
+ + A+ YD D+EV G +++++ A + Y+ KL L++YY + E E
Sbjct: 979 KSGDSGALSSSSAQPSPTYDPDLEVPGSDEFLQAAEEYYELYEEKLTTLMNYYRAELEDE 1038
Query: 1031 VLSGSIMRMSKSFTRRRD-------AEAINLAVRSLRKEARTWFNAREGADSNSDDLFAK 1090
+L+G+I +K +RD + I AV +L +EAR W + +D
Sbjct: 1039 ILTGNI--RNKMLYLKRDNKRYFEMKDRIVAAVDALHREARGWLL----SSRKEEDASRM 1098
Query: 1091 ASAWYYVTYHHSYWGCYNEGMKRDHYLSFPWCVYDKLMQIKENNLRRRER 1112
ASAWY VTYH + + + SFPW D L+ IK ++ RR R
Sbjct: 1099 ASAWYRVTYH-------PDRRRGKRFWSFPWIACDNLLAIKASSQLRRRR 1120
BLAST of CsaV3_5G011200 vs. ExPASy Swiss-Prot
Match:
Q9SG02 (RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana OX=3702 GN=RDR6 PE=1 SV=1)
HSP 1 Score: 556.6 bits (1433), Expect = 6.5e-157
Identity = 387/1075 (36.00%), Postives = 566/1075 (52.65%), Query Frame = 0
Query: 92 TYMYTLEELLLCFGCQVSTEKFRVLWEG-NVDLV------TFGIGMRKMN-FHLK----- 151
T Y L + L G VS + F V W VD + T RK F K
Sbjct: 127 TVPYKLAGITLEIGTLVSRDDFFVSWRAEGVDFLVDPFDNTCKFCFRKSTAFSFKDAVMH 186
Query: 152 -YKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIYKKVAPNSGQIFDNPLLN 211
+ +Y+LEL I ++ + + L++QL+ +PR++ + A + I+D +
Sbjct: 187 AVINCDYKLELLVRDIQTVRQY--KTLHGFVLILQLASSPRVWYRTADD--DIYDTVPGD 246
Query: 212 FFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQ------LPPFKQNFAYYEEFEHE 271
+ DD W+RTTDFT +IG+ S + + + L F+ E
Sbjct: 247 LLDD--DDPWIRTTDFTQVGAIGRCHSYRVLISPRYENKLRTALDYFRMRRVQEERVRWP 306
Query: 272 FRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLLDASFYRLVERI 331
R+ +E D + + + ++I+F +N+++ G L F+ L+
Sbjct: 307 PRIRNEPCFGEPVSDHFFCIHHKEGI-SFEIMFLVNSVLHRGVFNQFQLTERFFDLL--- 366
Query: 332 ITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRK-------YSRHPPNSPVISLDDGLV 391
R + + + L HL C Y F + Y++ ++P + +
Sbjct: 367 ---RNQPKDVNIASLKHL--CTYKRPVF--DAYKRLKLVQEWIQKNPKLLGSHEQSEDIS 426
Query: 392 YVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRS-------TD 451
+RR+ ITP + + PEV +SNRVLR + + FLRV+F+DE + S
Sbjct: 427 EIRRLVITPTRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAP 486
Query: 452 LLPRMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDID 511
++ ++S S KT +++R+ S+L +G + + + FLAFS++QLRD S W FA
Sbjct: 487 IVKDLTSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTR 546
Query: 512 AAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREI-IPDIEVQQGEIKYVF 571
+ I+ WMG F+ KN AK AAR+G F S+ + V +E + +PDIE + G YVF
Sbjct: 547 VSDIKTWMGKFKD-KNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIE-RNG---YVF 606
Query: 572 SDGIGKISSKFAKEVAAKCGFQA--VPSAFQIRYGGYKGVVAVDPYST--IKLSLRKSMC 631
SDGIG I+ A EV K P A+QIRY G+KGVVA P + I+L+LR SM
Sbjct: 607 SDGIGTITPDLADEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMK 666
Query: 632 KFESDNTKLDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLK 691
KF S +T L++ +++QP FLNRQ+ITL+S LGV DEIF Q + +L+ IL D
Sbjct: 667 KFFSKHTILEICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDV 726
Query: 692 AQEALELMSPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGR 751
A E L S E N ML G++P EP+L ML + R ++L LR KSRIF+ +GR
Sbjct: 727 AFEVL-TASCAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGR 786
Query: 752 AMMGCLDETRTLEYGQVFVQISSGRHRN-LSESFAFNRIGREHHLVIEGNVTVAKNPCLH 811
+MGCLDE LE+GQ F+Q+S N S+ + + + V++G V +AKNPCLH
Sbjct: 787 WLMGCLDEAGILEHGQCFIQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLH 846
Query: 812 PGDVRVLKAVNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIP--SR 871
PGDVR+L+AV++P L+HM DC++FPQKG RPH NE SGSDLDGD+YFV WD +LIP +
Sbjct: 847 PGDVRILEAVDVPQLHHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRK 906
Query: 872 QIPPMDYTPAPPNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPC 931
P M Y A L R V +DI ++F + N+ LG I NAH AD+ + A C
Sbjct: 907 SYPAMHYDAAEEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEEC 966
Query: 932 LELAKLFSVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIA 991
L LA+L + AVDFPKTG +P HL K +PDFM K D +Y+SNK++G+L+R VK++
Sbjct: 967 LLLAELAATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVY 1026
Query: 992 PTLSHIRS-FTRDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAE 1051
+ S + D + YD +E+ GFED + +A+ HK YD +L LL Y ++ E E
Sbjct: 1027 DEDAEASSEESTDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEE 1086
Query: 1052 VLSGSIMRMSKSFTRRRD--AEAINLAVRSLRKEARTWFNA----REGADSNSDDLF--A 1111
+++G I M K ++++ E + + SL+KE R F E ++
Sbjct: 1087 IVTGHIWSMPKYTSKKQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEK 1146
BLAST of CsaV3_5G011200 vs. ExPASy TrEMBL
Match:
E9NWK6 (RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=RDR1a PE=2 SV=1)
HSP 1 Score: 2313.1 bits (5993), Expect = 0.0e+00
Identity = 1130/1130 (100.00%), Postives = 1130/1130 (100.00%), Query Frame = 0
Query: 1 MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE
Sbjct: 1 MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
Query: 61 LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120
LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN
Sbjct: 61 LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120
Query: 121 VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180
VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY
Sbjct: 121 VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180
Query: 181 KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240
KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ
Sbjct: 181 KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240
Query: 241 NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL 300
NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL
Sbjct: 241 NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL 300
Query: 301 DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLD 360
DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLD
Sbjct: 301 DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLD 360
Query: 361 DGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLP 420
DGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLP
Sbjct: 361 DGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLP 420
Query: 421 RMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480
RMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY
Sbjct: 421 RMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480
Query: 481 IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGI 540
IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGI
Sbjct: 481 IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGI 540
Query: 541 GKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNTK 600
GKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNTK
Sbjct: 541 GKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNTK 600
Query: 601 LDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM 660
LDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM
Sbjct: 601 LDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM 660
Query: 661 SPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE 720
SPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE
Sbjct: 661 SPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE 720
Query: 721 TRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLKA 780
TRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLKA
Sbjct: 721 TRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLKA 780
Query: 781 VNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMDYTPAP 840
VNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMDYTPAP
Sbjct: 781 VNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMDYTPAP 840
Query: 841 PNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLELAKLFSVAV 900
PNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLELAKLFSVAV
Sbjct: 841 PNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLELAKLFSVAV 900
Query: 901 DFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTLSHIRSFTR 960
DFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTLSHIRSFTR
Sbjct: 901 DFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTLSHIRSFTR 960
Query: 961 DVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSIMRMSKS 1020
DVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSIMRMSKS
Sbjct: 961 DVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSIMRMSKS 1020
Query: 1021 FTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGCYNE 1080
FTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGCYNE
Sbjct: 1021 FTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGCYNE 1080
Query: 1081 GMKRDHYLSFPWCVYDKLMQIKENNLRRRERAARLASFDRFGHVLNLGGS 1131
GMKRDHYLSFPWCVYDKLMQIKENNLRRRERAARLASFDRFGHVLNLGGS
Sbjct: 1081 GMKRDHYLSFPWCVYDKLMQIKENNLRRRERAARLASFDRFGHVLNLGGS 1130
BLAST of CsaV3_5G011200 vs. ExPASy TrEMBL
Match:
A0A0A0KSM9 (RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_5G239140 PE=3 SV=1)
HSP 1 Score: 2292.7 bits (5940), Expect = 0.0e+00
Identity = 1130/1172 (96.42%), Postives = 1130/1172 (96.42%), Query Frame = 0
Query: 1 MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE
Sbjct: 1 MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
Query: 61 LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120
LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN
Sbjct: 61 LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120
Query: 121 VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180
VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY
Sbjct: 121 VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180
Query: 181 KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240
KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ
Sbjct: 181 KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240
Query: 241 NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL 300
NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL
Sbjct: 241 NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL 300
Query: 301 DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLD 360
DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLD
Sbjct: 301 DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLD 360
Query: 361 DGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLP 420
DGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLP
Sbjct: 361 DGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLP 420
Query: 421 RMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480
RMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY
Sbjct: 421 RMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480
Query: 481 IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGI 540
IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGI
Sbjct: 481 IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGI 540
Query: 541 GKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNTK 600
GKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNTK
Sbjct: 541 GKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNTK 600
Query: 601 LDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM 660
LDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM
Sbjct: 601 LDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM 660
Query: 661 SPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE 720
SPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE
Sbjct: 661 SPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE 720
Query: 721 TRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLKA 780
TRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLKA
Sbjct: 721 TRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLKA 780
Query: 781 VNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMDYTPAP 840
VNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMDYTPAP
Sbjct: 781 VNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMDYTPAP 840
Query: 841 PNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHT-------------------------- 900
PNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHT
Sbjct: 841 PNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFXXXXXXXXXXXXXXXXXX 900
Query: 901 ----------------AFADKELFKARSSPCLELAKLFSVAVDFPKTGVPAIIPSHLYVK 960
AFADKELFKARSSPCLELAKLFSVAVDFPKTGVPAIIPSHLYVK
Sbjct: 901 XXXXXXXXXXXXXXXXAFADKELFKARSSPCLELAKLFSVAVDFPKTGVPAIIPSHLYVK 960
Query: 961 EFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTLSHIRSFTRDVARRCYDCDMEVEGFED 1020
EFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTLSHIRSFTRDVARRCYDCDMEVEGFED
Sbjct: 961 EFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTLSHIRSFTRDVARRCYDCDMEVEGFED 1020
Query: 1021 YVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSIMRMSKSFTRRRDAEAINLAVRSLR 1080
YVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSIMRMSKSFTRRRDAEAINLAVRSLR
Sbjct: 1021 YVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSIMRMSKSFTRRRDAEAINLAVRSLR 1080
Query: 1081 KEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGCYNEGMKRDHYLSFPWCVYDKL 1131
KEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGCYNEGMKRDHYLSFPWCVYDKL
Sbjct: 1081 KEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGCYNEGMKRDHYLSFPWCVYDKL 1140
BLAST of CsaV3_5G011200 vs. ExPASy TrEMBL
Match:
A0A1S3CPY1 (RNA-dependent RNA polymerase OS=Cucumis melo OX=3656 GN=LOC103502906 PE=3 SV=1)
HSP 1 Score: 2182.9 bits (5655), Expect = 0.0e+00
Identity = 1063/1129 (94.15%), Postives = 1093/1129 (96.81%), Query Frame = 0
Query: 1 MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE
Sbjct: 1 MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
Query: 61 LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120
LI+SLANQRLWYGSSYLKAR+TEVDIVPKP+TYMY L++LLLCFGCQVS+EKFRVLWEGN
Sbjct: 61 LIVSLANQRLWYGSSYLKARSTEVDIVPKPKTYMYMLKDLLLCFGCQVSSEKFRVLWEGN 120
Query: 121 VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180
VDLVTFGIGMRKMNFHLKY SVEYRLELSYE IWQIQLH P+ QSMKYLLIQL GAPRIY
Sbjct: 121 VDLVTFGIGMRKMNFHLKYNSVEYRLELSYENIWQIQLHSPQCQSMKYLLIQLYGAPRIY 180
Query: 181 KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240
KKVAP+SGQIFDNP+LNFF E DDQWVRTTDFTSSCSIGQSSSLCLKLPNG +LP FKQ
Sbjct: 181 KKVAPSSGQIFDNPILNFFMEVPDDQWVRTTDFTSSCSIGQSSSLCLKLPNGLELPTFKQ 240
Query: 241 NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL 300
NFAYYEEFEHEFRLIDEDA+FSFCRDLAPIVDSR HVLPY+I+FKINALVQ+GCIPW LL
Sbjct: 241 NFAYYEEFEHEFRLIDEDASFSFCRDLAPIVDSRPHVLPYEIIFKINALVQHGCIPWSLL 300
Query: 301 DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLD 360
D SFYRLVERIIT RIEFVEHALEKLFHLKECNYDPSNFLTEQ+R+YSRHPPNSPVISLD
Sbjct: 301 DTSFYRLVERIITIRIEFVEHALEKLFHLKECNYDPSNFLTEQFRRYSRHPPNSPVISLD 360
Query: 361 DGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLP 420
DGLVYVRRVQITPCKV+FCGPEVNVSNRVLRHFS+YIDNFLRVSFVDEEWDKMRSTDLLP
Sbjct: 361 DGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSKYIDNFLRVSFVDEEWDKMRSTDLLP 420
Query: 421 RMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480
RMSSKSED KTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY
Sbjct: 421 RMSSKSEDSKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480
Query: 481 IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGI 540
IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQ GE+KYVFSDGI
Sbjct: 481 IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQHGEVKYVFSDGI 540
Query: 541 GKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNTK 600
GKISSKFAKEVA KCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDN K
Sbjct: 541 GKISSKFAKEVATKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNIK 600
Query: 601 LDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM 660
LDVLGHSKYQPCFLNRQLITL+STLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM
Sbjct: 601 LDVLGHSKYQPCFLNRQLITLLSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM 660
Query: 661 SPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE 720
SPGENTNILKEMLKCGY+PDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE
Sbjct: 661 SPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE 720
Query: 721 TRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLKA 780
T TLEYGQVFVQIS GRHRNLSESFAFN G+EH LVIEG VTVAKNPCLHPGDVRVLKA
Sbjct: 721 TMTLEYGQVFVQISGGRHRNLSESFAFNS-GQEHCLVIEGKVTVAKNPCLHPGDVRVLKA 780
Query: 781 VNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMDYTPAP 840
VN+PGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIP RQI PMDYTPA
Sbjct: 781 VNVPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPPRQITPMDYTPAL 840
Query: 841 PNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLELAKLFSVAV 900
P ELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKE FKARSSPC+ELAK FS+AV
Sbjct: 841 PIELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSSPCVELAKQFSIAV 900
Query: 901 DFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTLSHIRSFTR 960
DFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYES VIGKLFRAVKDIAPTLSHI+ FTR
Sbjct: 901 DFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESKNVIGKLFRAVKDIAPTLSHIQPFTR 960
Query: 961 DVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSIMRMSKS 1020
DVARRCYDCDMEVEGFEDY EDAFYHKSNYD KLGNLLDYYGIKSEAE+LSGSIMRMSKS
Sbjct: 961 DVARRCYDCDMEVEGFEDYFEDAFYHKSNYDDKLGNLLDYYGIKSEAEILSGSIMRMSKS 1020
Query: 1021 FTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGCYNE 1080
FTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGCYNE
Sbjct: 1021 FTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGCYNE 1080
Query: 1081 GMKRDHYLSFPWCVYDKLMQIKENNLRRRERAARLASFDRFGHVLNLGG 1130
GMKRDHYLSFPWC+YDKLMQIKENNLR+RERAARLA+FDRFGHVLNLGG
Sbjct: 1081 GMKRDHYLSFPWCIYDKLMQIKENNLRKRERAARLATFDRFGHVLNLGG 1128
BLAST of CsaV3_5G011200 vs. ExPASy TrEMBL
Match:
A0A5A7VKY3 (RNA-dependent RNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold598G00550 PE=3 SV=1)
HSP 1 Score: 2182.9 bits (5655), Expect = 0.0e+00
Identity = 1063/1129 (94.15%), Postives = 1093/1129 (96.81%), Query Frame = 0
Query: 1 MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE
Sbjct: 1 MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
Query: 61 LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120
LI+SLANQRLWYGSSYLKAR+TEVDIVPKP+TYMY L++LLLCFGCQVS+EKFRVLWEGN
Sbjct: 61 LIVSLANQRLWYGSSYLKARSTEVDIVPKPKTYMYMLKDLLLCFGCQVSSEKFRVLWEGN 120
Query: 121 VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180
VDLVTFGIGMRKMNFHLKY SVEYRLELSYE IWQIQLH P+ QSMKYLLIQL GAPRIY
Sbjct: 121 VDLVTFGIGMRKMNFHLKYNSVEYRLELSYENIWQIQLHSPQCQSMKYLLIQLYGAPRIY 180
Query: 181 KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240
KKVAP+SGQIFDNP+LNFF E DDQWVRTTDFTSSCSIGQSSSLCLKLPNG +LP FKQ
Sbjct: 181 KKVAPSSGQIFDNPILNFFMEVPDDQWVRTTDFTSSCSIGQSSSLCLKLPNGLELPTFKQ 240
Query: 241 NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL 300
NFAYYEEFEHEFRLIDEDA+FSFCRDLAPIVDSR HVLPY+I+FKINALVQ+GCIPW LL
Sbjct: 241 NFAYYEEFEHEFRLIDEDASFSFCRDLAPIVDSRPHVLPYEIIFKINALVQHGCIPWSLL 300
Query: 301 DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLD 360
D SFYRLVERIIT RIEFVEHALEKLFHLKECNYDPSNFLTEQ+R+YSRHPPNSPVISLD
Sbjct: 301 DTSFYRLVERIITIRIEFVEHALEKLFHLKECNYDPSNFLTEQFRRYSRHPPNSPVISLD 360
Query: 361 DGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLP 420
DGLVYVRRVQITPCKV+FCGPEVNVSNRVLRHFS+YIDNFLRVSFVDEEWDKMRSTDLLP
Sbjct: 361 DGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSKYIDNFLRVSFVDEEWDKMRSTDLLP 420
Query: 421 RMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480
RMSSKSED KTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY
Sbjct: 421 RMSSKSEDSKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480
Query: 481 IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGI 540
IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQ GE+KYVFSDGI
Sbjct: 481 IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQHGEVKYVFSDGI 540
Query: 541 GKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNTK 600
GKISSKFAKEVA KCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDN K
Sbjct: 541 GKISSKFAKEVATKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNIK 600
Query: 601 LDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM 660
LDVLGHSKYQPCFLNRQLITL+STLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM
Sbjct: 601 LDVLGHSKYQPCFLNRQLITLLSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM 660
Query: 661 SPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE 720
SPGENTNILKEMLKCGY+PDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE
Sbjct: 661 SPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE 720
Query: 721 TRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLKA 780
T TLEYGQVFVQIS GRHRNLSESFAFN G+EH LVIEG VTVAKNPCLHPGDVRVLKA
Sbjct: 721 TMTLEYGQVFVQISGGRHRNLSESFAFNS-GQEHCLVIEGKVTVAKNPCLHPGDVRVLKA 780
Query: 781 VNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMDYTPAP 840
VN+PGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIP RQI PMDYTPA
Sbjct: 781 VNVPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPPRQITPMDYTPAL 840
Query: 841 PNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLELAKLFSVAV 900
P ELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKE FKARSSPC+ELAK FS+AV
Sbjct: 841 PIELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSSPCVELAKQFSIAV 900
Query: 901 DFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTLSHIRSFTR 960
DFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYES VIGKLFRAVKDIAPTLSHI+ FTR
Sbjct: 901 DFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESKNVIGKLFRAVKDIAPTLSHIQPFTR 960
Query: 961 DVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSIMRMSKS 1020
DVARRCYDCDMEVEGFEDY EDAFYHKSNYD KLGNLLDYYGIKSEAE+LSGSIMRMSKS
Sbjct: 961 DVARRCYDCDMEVEGFEDYFEDAFYHKSNYDDKLGNLLDYYGIKSEAEILSGSIMRMSKS 1020
Query: 1021 FTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGCYNE 1080
FTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGCYNE
Sbjct: 1021 FTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGCYNE 1080
Query: 1081 GMKRDHYLSFPWCVYDKLMQIKENNLRRRERAARLASFDRFGHVLNLGG 1130
GMKRDHYLSFPWC+YDKLMQIKENNLR+RERAARLA+FDRFGHVLNLGG
Sbjct: 1081 GMKRDHYLSFPWCIYDKLMQIKENNLRKRERAARLATFDRFGHVLNLGG 1128
BLAST of CsaV3_5G011200 vs. ExPASy TrEMBL
Match:
A0A0S1YD00 (RNA-dependent RNA polymerase OS=Cucumis melo OX=3656 GN=RDR1a PE=2 SV=1)
HSP 1 Score: 2176.0 bits (5637), Expect = 0.0e+00
Identity = 1061/1130 (93.89%), Postives = 1094/1130 (96.81%), Query Frame = 0
Query: 1 MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE
Sbjct: 1 MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
Query: 61 LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120
LI+SLANQRLWYGSSYLKAR+TEVDIVPKP+TYMYTL++LLLCFGCQVS+EKFRVLWEGN
Sbjct: 61 LIVSLANQRLWYGSSYLKARSTEVDIVPKPKTYMYTLKDLLLCFGCQVSSEKFRVLWEGN 120
Query: 121 VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180
VDLVTFGIGMRKMNFHLKY SVEYRLELSYE IWQIQLH P+ QSMKYLLIQL GAPRIY
Sbjct: 121 VDLVTFGIGMRKMNFHLKYNSVEYRLELSYENIWQIQLHSPQCQSMKYLLIQLYGAPRIY 180
Query: 181 KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240
KKVAP+SGQIFDNP+LNFF E DDQWVRTTDFTSSCSIGQSSSLCLKLPNG +LP FKQ
Sbjct: 181 KKVAPSSGQIFDNPILNFFMEVPDDQWVRTTDFTSSCSIGQSSSLCLKLPNGLELPTFKQ 240
Query: 241 NFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLL 300
NFAYYEEFEHEFRLIDE A+FSFCRDLAPIVDSR HVLPY+I+FKINALVQ+GCIPW LL
Sbjct: 241 NFAYYEEFEHEFRLIDEGASFSFCRDLAPIVDSRPHVLPYEIIFKINALVQHGCIPWSLL 300
Query: 301 DASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKYSRHPPNSPVISLD 360
D SFYRLVERIIT RIEFVEHALEKLFHLKECNYDPSNFLTEQ+R+YSRHPPNSPVISLD
Sbjct: 301 DTSFYRLVERIITIRIEFVEHALEKLFHLKECNYDPSNFLTEQFRRYSRHPPNSPVISLD 360
Query: 361 DGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRSTDLLP 420
DGLVYVRRVQITPCKV+FCGPEVNVSNRVLRHFS+YIDNFLRVSFVDEEWDKMRSTDLLP
Sbjct: 361 DGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSKYIDNFLRVSFVDEEWDKMRSTDLLP 420
Query: 421 RMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480
RMSSKSED KTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY
Sbjct: 421 RMSSKSEDSKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDIDAAY 480
Query: 481 IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVFSDGI 540
IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQ GE+KYVFSDGI
Sbjct: 481 IRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQHGEVKYVFSDGI 540
Query: 541 GKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNTK 600
GKISSKFAKEVA KCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDN K
Sbjct: 541 GKISSKFAKEVATKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFESDNIK 600
Query: 601 LDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM 660
LDVLGHSKYQPCFLNRQLITL+STLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM
Sbjct: 601 LDVLGHSKYQPCFLNRQLITLLSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELM 660
Query: 661 SPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE 720
SPGENTNILKEMLKCGY+PDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE
Sbjct: 661 SPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDE 720
Query: 721 TRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLKA 780
T TLEYGQVFVQIS GRHRNLSESFAFN G+EH LVIEG VTVAKNPCLHPGDVRVLKA
Sbjct: 721 TMTLEYGQVFVQISGGRHRNLSESFAFNS-GQEHCLVIEGKVTVAKNPCLHPGDVRVLKA 780
Query: 781 VNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMDYTPAP 840
VN+PGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIP R+I PMDYTPA
Sbjct: 781 VNVPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPPRRITPMDYTPAL 840
Query: 841 PNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLELAKLFSVAV 900
P ELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKE FKARSSPC+ELAK FS+AV
Sbjct: 841 PIELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSSPCVELAKQFSIAV 900
Query: 901 DFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTLSHIRSFTR 960
DFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYES VIGKLFRAVKDIAPTLSHI+ FTR
Sbjct: 901 DFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESKNVIGKLFRAVKDIAPTLSHIQPFTR 960
Query: 961 DVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSIMRMSKS 1020
DVARRCYDCDMEVEGFEDYVEDAFYHKSNYD KLGNLLDYYGIKSEAE+LSGSIMRMSKS
Sbjct: 961 DVARRCYDCDMEVEGFEDYVEDAFYHKSNYDDKLGNLLDYYGIKSEAEILSGSIMRMSKS 1020
Query: 1021 FTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGCYNE 1080
FTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWG YNE
Sbjct: 1021 FTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYWGYYNE 1080
Query: 1081 GMKRDHYLSFPWCVYDKLMQIKENNLRRRERAARLASFDRFGHVLNLGGS 1131
GMKRD+YLSFPWC+YDKLMQIKENNLR+RERAARLA+FDRFG+VLNLGGS
Sbjct: 1081 GMKRDYYLSFPWCIYDKLMQIKENNLRKRERAARLATFDRFGYVLNLGGS 1129
BLAST of CsaV3_5G011200 vs. TAIR 10
Match:
AT1G14790.1 (RNA-dependent RNA polymerase 1 )
HSP 1 Score: 1423.7 bits (3684), Expect = 0.0e+00
Identity = 722/1133 (63.72%), Postives = 870/1133 (76.79%), Query Frame = 0
Query: 1 MGKTIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGGGRLYAIVQFTSATQAE 60
MGKTI + GFP+ V+A+ VK FLE TG GTVYAIKVR PK+GG R+YAIVQFTS
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPRVYAIVQFTSERHTR 60
Query: 61 LIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEKFRVLWEGN 120
LII+ A +RL+YG SYLKA E DIVPKPR ++T+ L + FGCQVST+KF LW
Sbjct: 61 LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 120
Query: 121 VDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIY 180
V+FGIGMRK++F + +YRLELSYE IWQI LH P+ +S K+L+IQ+ GAP+I+
Sbjct: 121 DVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVIGAPKIF 180
Query: 181 KKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQLPPFKQ 240
+K +F +++F+ + SD+QW+RTTDFTSS IGQS++ CL+LP +P F++
Sbjct: 181 EKEDQPINLLFG--IMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNVPDFRE 240
Query: 241 NFAYYEEFEHEFRLIDEDANFSF-CRDLAPIVD-SRSHVLPYKILFKINALVQYGCIPWP 300
NFA Y E LI+ +++S L P+VD LP++ILFK+N LVQ C+ P
Sbjct: 241 NFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNACLSGP 300
Query: 301 LLDASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKY--SRHPPNSPV 360
LD FYRL+ + R ++H LEKLFHL EC Y+P+++L ++Y+K+ P SP
Sbjct: 301 ALDLDFYRLLNQKKYDR-ALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLPLSPT 360
Query: 361 ISLDDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRST 420
ISLDDGLVY+ RVQ+TP +V+F GPEVNVSNRVLRH+S+YI+NFLRVSFVDE+ +K+RS
Sbjct: 361 ISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSM 420
Query: 421 DLLPRMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDI 480
DL PR S++ +T +Y RI SVL++GIVIGDK F+FLAFSSSQLR+NS WMFA I
Sbjct: 421 DLSPRSSTQR---RTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAPIDRI 480
Query: 481 DAAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIEVQQGEIKYVF 540
AA+IRAWMGDF HI+N AKYAARLGQSF SS E L+V S+E E+IPD+E+ +YVF
Sbjct: 481 TAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVF 540
Query: 541 SDGIGKISSKFAKEVAAKCGF-QAVPSAFQIRYGGYKGVVAVDPYSTIKLSLRKSMCKFE 600
SDGIGKIS++FA++VA KCG + PSAFQIRYGGYKGVVAVDP S+ KLSLRKSM KFE
Sbjct: 541 SDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFE 600
Query: 601 SDNTKLDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQE 660
S+NTKLDVL SKYQPC++NRQLITL+STLGV D +FEKKQ E V++LDAILT PL+A E
Sbjct: 601 SENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHE 660
Query: 661 ALELMSPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMM 720
AL LM+PGENTNILK ++ CGY+PD EP+LSMMLQ FRASKLLELRTK+RIFI GR+MM
Sbjct: 661 ALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMM 720
Query: 721 GCLDETRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDV 780
GCLDETRTLEYGQV VQ S R GR +I G V VAKNPCLHPGDV
Sbjct: 721 GCLDETRTLEYGQVVVQYSDPM-----------RPGR--RFIITGPVVVAKNPCLHPGDV 780
Query: 781 RVLKAVNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPSRQIPPMD 840
RVL+AVN+P L HMVDCVVFPQKG RPHPNECSGSDLDGDIYFVCWD EL+P R PMD
Sbjct: 781 RVLQAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMD 840
Query: 841 YTPAPPNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPCLELAKL 900
YTP P LD DVT E+++EYF NY+VNDSLGIIANAHTAFADKE KA S PC+ELAK
Sbjct: 841 YTPEPTQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKK 900
Query: 901 FSVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIAPTLSHI 960
FS AVDFPKTGV A+IP HLYVKE+PDFMEKPD+P+YES VIGKLFR VK+ AP L I
Sbjct: 901 FSTAVDFPKTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISI 960
Query: 961 RSFTRDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAEVLSGSIM 1020
+SFT DVA + YD DMEV+GFE+YV++AFY K+NYD+KLGNL+DYYGIK+EAE+LSG IM
Sbjct: 961 KSFTLDVASKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGIM 1020
Query: 1021 RMSKSFTRRRDAEAINLAVRSLRKEARTWFNAREGADSNSDDLFAKASAWYYVTYHHSYW 1080
RMSKSFT+RRDAE+I AVR+LRKE + FNA E ++ S AKASAWY+VTYH SYW
Sbjct: 1021 RMSKSFTKRRDAESIGRAVRALRKETLSLFNASEEEENES----AKASAWYHVTYHSSYW 1080
Query: 1081 GCYNEGMKRDHYLSFPWCVYDKLMQIKENNLRRRERAARLASFDRFGHVLNLG 1129
G YNEG+ RDH+LSF WCVYDKL++IK+ NL RR+R L +R HVL G
Sbjct: 1081 GLYNEGLNRDHFLSFAWCVYDKLVRIKKTNLGRRQRQETL---ERLDHVLRFG 1107
BLAST of CsaV3_5G011200 vs. TAIR 10
Match:
AT4G11130.1 (RNA-dependent RNA polymerase 2 )
HSP 1 Score: 771.2 bits (1990), Expect = 1.2e-222
Identity = 458/1135 (40.35%), Postives = 661/1135 (58.24%), Query Frame = 0
Query: 4 TIHISGFPSHVTADAVKNFLEGHTGPGTVYAIKVRPPKRGG--GRLYAIVQFTS---ATQ 63
T+ IS P + AD + FLE H G TV+A+++ P R R +A VQFT+ ++
Sbjct: 11 TVKISNVPQTIVADELLRFLELHLGEDTVFALEI-PTTRDNWKPRDFARVQFTTLEVKSR 70
Query: 64 AELIISLANQRLWYGSSYLKARATEVDIVPKPRTYMYTLEELLLCFGCQVSTEK-FRVL- 123
A+L+ S +L + + L+ DI+P+P L++++L G S EK F L
Sbjct: 71 AQLLSS--QSKLLFKTHNLRLSEAYDDIIPRPVDPRKRLDDIVLTVGFPESDEKRFCALE 130
Query: 124 -WEGNVDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKY--LLIQL 183
W+G + R++ F + Y++E+ +E I + C + + L++L
Sbjct: 131 KWDGVRCWIL--TEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDASEIDAFLLKL 190
Query: 184 SGAPRIYKKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGR 243
P+++K+V + F + F KE D W+RTTDF+ S SIG S+ CL++ NG
Sbjct: 191 KYGPKVFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLEVHNGS 250
Query: 244 QLPPFKQNFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHVL--PYKILFKINALVQ 303
+ YY E +D F+ + P++++ L PY+ILF++NALV
Sbjct: 251 TMLDIFSGLPYYREDTLSLTYVD-GKTFASAAQIVPLLNAAILGLEFPYEILFQLNALVH 310
Query: 304 YGCIPWPLLDASFYRLVERIITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYR---KYS 363
I L AS L++ + +E L+KL YDP F+ Q + K
Sbjct: 311 AQKI--SLFAASDMELIKILRGMSLETALVILKKLHQQSSICYDPVFFVKTQMQSVVKKM 370
Query: 364 RHPPNSPVISL-DDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVD 423
+H P S L + ++ +R +TP K++ GPE+ +N V+++F++++ +F+RV+FV+
Sbjct: 371 KHSPASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMRVTFVE 430
Query: 424 EEWDKMRSTDLLPRMSSKSEDG------KTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQ 483
E+W K+ + L S S++G +T+IY R+LS+L GI +G K F+FLAFS+SQ
Sbjct: 431 EDWSKLPANAL----SVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSASQ 490
Query: 484 LRDNSLWMFASGPDIDAAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREI 543
LR NS+WMFAS + A IR WMG FR I++ +K AAR+GQ F +S + L V + + E
Sbjct: 491 LRGNSVWMFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVEQ 550
Query: 544 IPDIEVQQGEIKYVFSDGIGKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYS 603
IPDIEV Y FSDGIGKIS FAK+VA KCG VPSAFQIRYGGYKGV+AVD S
Sbjct: 551 IPDIEVTTDGADYCFSDGIGKISLAFAKQVAQKCGLSHVPSAFQIRYGGYKGVIAVDRSS 610
Query: 604 TIKLSLRKSMCKFESDNTKLDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVE 663
KLSLR SM KF+S+N L+V ++ PCFLNR++I L+STLG+ D +FE Q+ +
Sbjct: 611 FRKLSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVHLS 670
Query: 664 QLDAILTDPLKAQEALELMSPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELR 723
L +L D A L+ +S + N+L +ML GY P EPYLSMML+ S+L EL+
Sbjct: 671 MLGNMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSELK 730
Query: 724 TKSRIFIPNGRAMMGCLDETRTLEYGQVFVQISSGRHRNLSESFAFNRIGREHHLVIEGN 783
++ RI +P GR ++GC+DE LEYGQV+V+++ + S ++ R E V+ G
Sbjct: 731 SRCRILVPKGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEETSVVIGK 790
Query: 784 VTVAKNPCLHPGDVRVLKAVNIPGLYH--MVDCVVFPQKGSRPHPNECSGSDLDGDIYFV 843
V V KNPCLHPGD+RVL A+ +DC++FPQKG RPHPNECSG DLDGD +FV
Sbjct: 791 VVVTKNPCLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQFFV 850
Query: 844 CWDTELIPSRQIPPMDYTPAPPNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADK 903
WD ++IPS PPMDY + P +D DVT E+I ++FV+YM++D+LG+I+ AH AD+
Sbjct: 851 SWDEKIIPSEMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHADR 910
Query: 904 ELFKARSSPCLELAKLFSVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIG 963
+ KARS CLELA L S AVDF KTG PA +P L +EFPDF+E+ ++P+Y S V G
Sbjct: 911 DPEKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISESVFG 970
Query: 964 KLFRAVKDIAPTLSHIRSFTRDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLD 1023
KL+RAVK +L+ + YD +E GFE ++E A H+ Y KL +L+
Sbjct: 971 KLYRAVKS---SLAQRKPEAESEDTVAYDVTLEEAGFESFIETAKAHRDMYGEKLTSLMI 1030
Query: 1024 YYGIKSEAEVLSGSI----MRMSKSFTRRRD-AEAINLAVRSLRKEARTWFNAREGADSN 1083
YYG +E E+L+G + M +++ R D + I L+V+ L KEA WF E + +
Sbjct: 1031 YYGAANEEEILTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWF---EKSCED 1090
Query: 1084 SDDLFAKASAWYYVTYHHSYWGCYNEGMKRDHYLSFPWCVYDKLMQIKENNLRRR 1110
ASAWYYVTY+ N ++ +LSFPW V D L+ IK N +R+
Sbjct: 1091 EQQKKKLASAWYYVTYNP------NHRDEKLTFLSFPWIVGDVLLDIKAENAQRQ 1121
BLAST of CsaV3_5G011200 vs. TAIR 10
Match:
AT3G49500.1 (RNA-dependent RNA polymerase 6 )
HSP 1 Score: 556.6 bits (1433), Expect = 4.6e-158
Identity = 387/1075 (36.00%), Postives = 566/1075 (52.65%), Query Frame = 0
Query: 92 TYMYTLEELLLCFGCQVSTEKFRVLWEG-NVDLV------TFGIGMRKMN-FHLK----- 151
T Y L + L G VS + F V W VD + T RK F K
Sbjct: 127 TVPYKLAGITLEIGTLVSRDDFFVSWRAEGVDFLVDPFDNTCKFCFRKSTAFSFKDAVMH 186
Query: 152 -YKSVEYRLELSYEIIWQIQLHCPRDQSMKYLLIQLSGAPRIYKKVAPNSGQIFDNPLLN 211
+ +Y+LEL I ++ + + L++QL+ +PR++ + A + I+D +
Sbjct: 187 AVINCDYKLELLVRDIQTVRQY--KTLHGFVLILQLASSPRVWYRTADD--DIYDTVPGD 246
Query: 212 FFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLPNGRQ------LPPFKQNFAYYEEFEHE 271
+ DD W+RTTDFT +IG+ S + + + L F+ E
Sbjct: 247 LLDD--DDPWIRTTDFTQVGAIGRCHSYRVLISPRYENKLRTALDYFRMRRVQEERVRWP 306
Query: 272 FRLIDEDANFSFCRDLAPIVDSRSHVLPYKILFKINALVQYGCIPWPLLDASFYRLVERI 331
R+ +E D + + + ++I+F +N+++ G L F+ L+
Sbjct: 307 PRIRNEPCFGEPVSDHFFCIHHKEGI-SFEIMFLVNSVLHRGVFNQFQLTERFFDLL--- 366
Query: 332 ITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRK-------YSRHPPNSPVISLDDGLV 391
R + + + L HL C Y F + Y++ ++P + +
Sbjct: 367 ---RNQPKDVNIASLKHL--CTYKRPVF--DAYKRLKLVQEWIQKNPKLLGSHEQSEDIS 426
Query: 392 YVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFVDEEWDKMRS-------TD 451
+RR+ ITP + + PEV +SNRVLR + + FLRV+F+DE + S
Sbjct: 427 EIRRLVITPTRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAP 486
Query: 452 LLPRMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNSLWMFASGPDID 511
++ ++S S KT +++R+ S+L +G + + + FLAFS++QLRD S W FA
Sbjct: 487 IVKDLTSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTR 546
Query: 512 AAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREI-IPDIEVQQGEIKYVF 571
+ I+ WMG F+ KN AK AAR+G F S+ + V +E + +PDIE + G YVF
Sbjct: 547 VSDIKTWMGKFKD-KNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIE-RNG---YVF 606
Query: 572 SDGIGKISSKFAKEVAAKCGFQA--VPSAFQIRYGGYKGVVAVDPYST--IKLSLRKSMC 631
SDGIG I+ A EV K P A+QIRY G+KGVVA P + I+L+LR SM
Sbjct: 607 SDGIGTITPDLADEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMK 666
Query: 632 KFESDNTKLDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLK 691
KF S +T L++ +++QP FLNRQ+ITL+S LGV DEIF Q + +L+ IL D
Sbjct: 667 KFFSKHTILEICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDV 726
Query: 692 AQEALELMSPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGR 751
A E L S E N ML G++P EP+L ML + R ++L LR KSRIF+ +GR
Sbjct: 727 AFEVL-TASCAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGR 786
Query: 752 AMMGCLDETRTLEYGQVFVQISSGRHRN-LSESFAFNRIGREHHLVIEGNVTVAKNPCLH 811
+MGCLDE LE+GQ F+Q+S N S+ + + + V++G V +AKNPCLH
Sbjct: 787 WLMGCLDEAGILEHGQCFIQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLH 846
Query: 812 PGDVRVLKAVNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIP--SR 871
PGDVR+L+AV++P L+HM DC++FPQKG RPH NE SGSDLDGD+YFV WD +LIP +
Sbjct: 847 PGDVRILEAVDVPQLHHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRK 906
Query: 872 QIPPMDYTPAPPNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFKARSSPC 931
P M Y A L R V +DI ++F + N+ LG I NAH AD+ + A C
Sbjct: 907 SYPAMHYDAAEEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEEC 966
Query: 932 LELAKLFSVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRAVKDIA 991
L LA+L + AVDFPKTG +P HL K +PDFM K D +Y+SNK++G+L+R VK++
Sbjct: 967 LLLAELAATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVY 1026
Query: 992 PTLSHIRS-FTRDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGIKSEAE 1051
+ S + D + YD +E+ GFED + +A+ HK YD +L LL Y ++ E E
Sbjct: 1027 DEDAEASSEESTDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEE 1086
Query: 1052 VLSGSIMRMSKSFTRRRD--AEAINLAVRSLRKEARTWFNA----REGADSNSDDLF--A 1111
+++G I M K ++++ E + + SL+KE R F E ++
Sbjct: 1087 IVTGHIWSMPKYTSKKQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEK 1146
BLAST of CsaV3_5G011200 vs. TAIR 10
Match:
AT2G19910.1 (RNA-dependent RNA polymerase family protein )
HSP 1 Score: 118.6 bits (296), Expect = 3.2e-26
Identity = 115/421 (27.32%), Postives = 180/421 (42.76%), Query Frame = 0
Query: 564 FQIRYGGY--KGVVAVD---PYSTIKLSLRKSMCKFESDNT--------KLDVLGHSK-Y 623
F+I Y GY KG + P T++ +R SM K D T L+V+ S
Sbjct: 455 FRIFYNGYAVKGTFLTNKKLPPRTVQ--VRPSMIKVYEDRTLSNLSTFNSLEVVTTSNPP 514
Query: 624 QPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELMSPGENTNIL 683
+ L+R L+ L+S GV ++ F +E+ I A +A + T
Sbjct: 515 RKARLSRNLVALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKAAINYGDDQYT--- 574
Query: 684 KEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDETRTLEYGQV 743
+M+ G D EPYL L ++ L+ R I +MG +D T L+ ++
Sbjct: 575 ADMILVGIPLD-EPYLKDRLSYLLKTERNALKA-GRFPIDESYYIMGTVDPTGELKENEI 634
Query: 744 FVQISSGRHRNLSESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLKAVNIPGLYHM 803
V + SG+ I G+V V +NP LH GD+ VLKA + L
Sbjct: 635 CVILHSGQ--------------------ISGDVLVYRNPGLHFGDIHVLKATYVKALEDY 694
Query: 804 VD----CVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIP---------SRQIPPMDY 863
V V FPQKG R +E +G D DGD+YF+ + +L+ S P Y
Sbjct: 695 VGNAKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHFKPSEPWVSSSKPSKIY 754
Query: 864 TPAPPNELDRDVTTEDIQEYFV--NYMVNDSLGIIANAHTAFAD----------KELFKA 923
P+EL + E++ + F+ + D +G+ A+ D KE ++
Sbjct: 755 CGRKPSELSEEELEEELFKMFLKARFCKRDVIGMAADCWLGIMDPFLTLGDESAKEKYE- 814
Query: 924 RSSPCLELAKLFSVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFRA 946
R L+L ++ A+D PK G +P L +K FP +ME+ + + S ++G +F
Sbjct: 815 RKKNILKLIDIYYDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTSILGLIFDT 847
BLAST of CsaV3_5G011200 vs. TAIR 10
Match:
AT2G19930.1 (RNA-dependent RNA polymerase family protein )
HSP 1 Score: 116.3 bits (290), Expect = 1.6e-25
Identity = 126/470 (26.81%), Postives = 204/470 (43.40%), Query Frame = 0
Query: 535 VFSDGIGKISSKFAK--------------EVAAKCGFQAVPSAFQIR--YGGY--KG--- 594
+ SDG G IS A+ E + +Q P Q R Y GY KG
Sbjct: 397 IHSDGTGYISEDLARMCPLNIFKGKCLRSESIQEACYQDPPLLIQFRMFYDGYAVKGTFL 456
Query: 595 --------VVAVDPYSTIKLSLRKSMCKFESDNTKLDVLGHSKYQPCFLNRQLITLMSTL 654
V V P S IK+S S+ F + N V + + L++ L+ L+S
Sbjct: 457 LNKKLCPRTVQVRP-SMIKVSKDPSLSNFSTFNALEVVTTSNPPKRTKLSKNLVALLSYG 516
Query: 655 GVRDEIFEKKQSEAVEQLDAILTDPLKAQEALELMSPGENTNILKEMLKCGY---QPDVE 714
G+ +E F +E+ +I + A A ++ N +M+ G +P ++
Sbjct: 517 GIPNEFFLDILLNTLEESKSIFYNKRAALNAALNYGEMDDQN-AAQMILVGIPLDEPHLK 576
Query: 715 PYLSMMLQTFRASKLLELRTKSRIFIPNGRAMMGCLDETRTLEYGQVFVQISSGRHRNLS 774
YLS++L+T + +L+ ++ + +MG +D T L+ +V V + SG+
Sbjct: 577 NYLSILLKTEKN----DLKA-GKLPVTESYYLMGTVDPTGALKEDEVCVILESGQ----- 636
Query: 775 ESFAFNRIGREHHLVIEGNVTVAKNPCLHPGDVRVLKAVNIPGLYHMVD----CVVFPQK 834
I G V V +NP LH GD+ +LKA + L V V FPQK
Sbjct: 637 ---------------ISGEVLVYRNPGLHFGDIHILKATYVKALEEYVGNSKFAVFFPQK 696
Query: 835 GSRPHPNECSGSDLDGDIYFVCWDTELI----PSRQIPPMDYTP-------APPNELDRD 894
G R +E +G D DGD+YF+ + EL+ PS P + TP P++L +
Sbjct: 697 GPRSLGDEIAGGDFDGDMYFISRNPELLENFKPSE--PWVSLTPPSKSNSGRAPSQLSPE 756
Query: 895 VTTEDIQEYFV--NYMVNDSLGIIANAHTAFADKELF--------KAR-SSPCLELAKLF 947
E++ E F+ + ++ +GI A++ D+ L KA LEL ++
Sbjct: 757 ELEEELFEMFLTAGFHASNVIGIAADSWLTIMDRFLILGDDRAEEKAEMKKKMLELIDIY 816
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| NP_001267692.1 | 0.0e+00 | 100.00 | RNA-dependent RNA polymerase 1-like [Cucumis sativus] >XP_031740799.1 RNA-depend... | [more] |
| XP_008465250.1 | 0.0e+00 | 94.15 | PREDICTED: RNA-dependent RNA polymerase 1 [Cucumis melo] >XP_008465251.1 PREDICT... | [more] |
| NP_001315397.1 | 0.0e+00 | 93.89 | RNA-dependent RNA polymerase 1 [Cucumis melo] >ALM88236.1 RNA-dependent RNA poly... | [more] |
| XP_038891504.1 | 0.0e+00 | 88.08 | RNA-dependent RNA polymerase 1 isoform X1 [Benincasa hispida] >XP_038891505.1 RN... | [more] |
| XP_031740802.1 | 0.0e+00 | 100.00 | RNA-dependent RNA polymerase 1-like isoform X2 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Q9LQV2 | 0.0e+00 | 63.72 | RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1 | [more] |
| Q0DXS3 | 2.1e-277 | 64.03 | Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica OX=39947... | [more] |
| O82504 | 1.7e-221 | 40.35 | RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=RDR2 PE=1 SV=1 | [more] |
| Q7XM31 | 7.0e-212 | 39.12 | Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica OX=39947... | [more] |
| Q9SG02 | 6.5e-157 | 36.00 | RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana OX=3702 GN=RDR6 PE=1 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| E9NWK6 | 0.0e+00 | 100.00 | RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=RDR1a PE=2 SV=1 | [more] |
| A0A0A0KSM9 | 0.0e+00 | 96.42 | RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_5G239140 PE=3 SV=... | [more] |
| A0A1S3CPY1 | 0.0e+00 | 94.15 | RNA-dependent RNA polymerase OS=Cucumis melo OX=3656 GN=LOC103502906 PE=3 SV=1 | [more] |
| A0A5A7VKY3 | 0.0e+00 | 94.15 | RNA-dependent RNA polymerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... | [more] |
| A0A0S1YD00 | 0.0e+00 | 93.89 | RNA-dependent RNA polymerase OS=Cucumis melo OX=3656 GN=RDR1a PE=2 SV=1 | [more] |
