CsaV3_5G008810 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G008810
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr5: 5454056 .. 5454617 (-)
RNA-Seq Expression	CsaV3_5G008810
Synteny	CsaV3_5G008810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCTGAAAGTCAAATCTACAAAGATGAAACGAGAAAGAGACACATTACAGAGGAATGAAGGTGGGGTTTCCATGGATCTGAAAACAGAACTCCATGGAGGGCAAGAAAATTGGAACAGGGGAAATGGGGATATAGTTGAAAGAGAGAGAAAAAGGGGGAAATTTGGAGAAATTGGAGAAATGGGTCTTCGTCAAATGGGAGGAGGGTCGAGTTTTGAGGATGACCGACGACAATTTGGTTCTGATAAGAGGAGGAGAGAGATGAGAGGAATAAGAGAGAGAGAGAGAGAGAGAGAGAGATTTGAAGCAGAGGAGGAGGTAAACGCTTAAGAAGGAGAACCCATTTATTCCTATTTCATATATTTAAATATTTTAGGGATTATTATCATTATTATTTATGGTTATAATTATTATATTTCCAAATATTTTTATCTATTTATTTTTTTCTTTTTCTCTTCAAGTCCTCCAGTTCCCATCCATTCCTAAGGCGGCGATTACTAAGAGGAACGGACACTTTTTCCTACCGGCGCCGGCGACATTCCACTCTACCTTTATTTAG

mRNA sequence

ATGGATCTGAAAGTCAAATCTACAAAGATGAAACGAGAAAGAGACACATTACAGAGGAATGAAGGTGGGGTTTCCATGGATCTGAAAACAGAACTCCATGGAGGGCAAGAAAATTGGAACAGGGGAAATGGGGATATAGTTGAAAGAGAGAGAAAAAGGGGGAAATTTGGAGAAATTGGAGAAATGGGTCTTCGTCAAATGGGAGGAGGGTCGAGTTTTGAGGATGACCGACGACAATTTGGTTCTGATAAGAGGAGGAGAGAGATGAGAGGAATAAGAGAGAGAGAGAGAGAGAGAGAGAGATTTGAAGCAGAGGAGGAGTTCCCATCCATTCCTAAGGCGGCGATTACTAAGAGGAACGGACACTTTTTCCTACCGGCGCCGGCGACATTCCACTCTACCTTTATTTAG

Coding sequence (CDS)

ATGGATCTGAAAGTCAAATCTACAAAGATGAAACGAGAAAGAGACACATTACAGAGGAATGAAGGTGGGGTTTCCATGGATCTGAAAACAGAACTCCATGGAGGGCAAGAAAATTGGAACAGGGGAAATGGGGATATAGTTGAAAGAGAGAGAAAAAGGGGGAAATTTGGAGAAATTGGAGAAATGGGTCTTCGTCAAATGGGAGGAGGGTCGAGTTTTGAGGATGACCGACGACAATTTGGTTCTGATAAGAGGAGGAGAGAGATGAGAGGAATAAGAGAGAGAGAGAGAGAGAGAGAGAGATTTGAAGCAGAGGAGGAGTTCCCATCCATTCCTAAGGCGGCGATTACTAAGAGGAACGGACACTTTTTCCTACCGGCGCCGGCGACATTCCACTCTACCTTTATTTAG

Protein sequence

MDLKVKSTKMKRERDTLQRNEGGVSMDLKTELHGGQENWNRGNGDIVERERKRGKFGEIGEMGLRQMGGGSSFEDDRRQFGSDKRRREMRGIRERERERERFEAEEEFPSIPKAAITKRNGHFFLPAPATFHSTFI*

Homology

[Close]

BLAST of CsaV3_5G008810 vs. NCBI nr
Match: KAE8648014.1 (hypothetical protein Csa_021396 [Cucumis sativus])

HSP 1 Score: 264.6 bits (675), Expect = 4.7e-67
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MDLKVKSTKMKRERDTLQRNEGGVSMDLKTELHGGQENWNRGNGDIVERERKRGKFGEIG 60
           MDLKVKSTKMKRERDTLQRNEGGVSMDLKTELHGGQENWNRGNGDIVERERKRGKFGEIG
Sbjct: 1   MDLKVKSTKMKRERDTLQRNEGGVSMDLKTELHGGQENWNRGNGDIVERERKRGKFGEIG 60

Query: 61  EMGLRQMGGGSSFEDDRRQFGSDKRRREMRGIRERERERERFEAEEEFPSIPKAAITKRN 120
           EMGLRQMGGGSSFEDDRRQFGSDKRRREMRGIRERERERERFEAEEEFPSIPKAAITKRN
Sbjct: 61  EMGLRQMGGGSSFEDDRRQFGSDKRRREMRGIRERERERERFEAEEEFPSIPKAAITKRN 120

Query: 121 GHFFLPAPATFHSTFI 137
           GHFFLPAPATFHSTFI
Sbjct: 121 GHFFLPAPATFHSTFI 136

[Close]

BLAST of CsaV3_5G008810 vs. ExPASy TrEMBL
Match: A0A0A0KP20 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G198140 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 4.7e-49
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MDLKVKSTKMKRERDTLQRNEGGVSMDLKTELHGGQENWNRGNGDIVERERKRGKFGEIG 60
           MDLKVKSTKMKRERDTLQRNEGGVSMDLKTELHGGQENWNRGNGDIVERERKRGKFGEIG
Sbjct: 1   MDLKVKSTKMKRERDTLQRNEGGVSMDLKTELHGGQENWNRGNGDIVERERKRGKFGEIG 60

Query: 61  EMGLRQMGGGSSFEDDRRQFGSDKRRREMRGIRERERERERFEAEEE 108
           EMGLRQMGGGSSFEDDRRQFGSDKRRREMRGIRERERERERFEAEEE
Sbjct: 61  EMGLRQMGGGSSFEDDRRQFGSDKRRREMRGIRERERERERFEAEEE 107

The following BLAST results are available for this feature:

BLAST of CsaV3_5G008810 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648014.1	4.7e-67	100.00	hypothetical protein Csa_021396 [Cucumis sativus]	[more]

BLAST of CsaV3_5G008810 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G008810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KP20	4.7e-49	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G198140 PE=4 SV=1	[more]

BLAST of CsaV3_5G008810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G008810.1	CsaV3_5G008810.1	mRNA