CsaV3_5G008790 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G008790
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	60S ribosomal protein L35a-1
Location	chr5: 5448076 .. 5451060 (+)
RNA-Seq Expression	CsaV3_5G008790
Synteny	CsaV3_5G008790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTTTATTATTTTTAAAAAAATGTGCATATTTTTTTTAAAAAATGGCAGTTTTTAAAGTATAAATTTCAGAAATAAGTTGAAGATATCCACAAATGAATGTAAATTATTTATGTTGTTAAACTTAACCCTATCATAAAAATTTACAAAATAAACAGAAAACTCAAAAGAGCTGGTGGACCAAGCTAGAGGCCCAAAGCCCAATATAGAGCCCCCCAATCTAAAGCCCACATAAAGACATTTATAAGACTGGAGAATTAGGTTTTAGACCTCATCGGCCGTCAAACACTCCATAGCTGAAGCAGAAACCCGCCGAAGATGGTGAAGGGAAGGCAAGGAGAGAGAGTCAGGTTTGTAATCTAAACCTTCAAAAATTCGATTCTTCAACTTCATTTTCAATGATTCTAACCTAAAATTGTTTTATTGTTCTTCCGCTTTTGTTTCTTGTTGGAACCAGACTCTACACCAGGGGAACAATTCTCGGCTACAAGAGGTAGTTAAGCATTACTATATATTAACTCTATTCATTCATTCGACTTTGAACAATACTGGAATATGAATCTGTATAGAGTATTATCAATTTAGTTTGTCATTTGTTTGAAAGCTAAAGATGATTGGTGTGGTGCTTAGGTCGAAGTCGAACCAGTACCCAAACACTTCTTTACTCCAGATCGAGGGTGTTAATTCTAAGGATGAGGTTTCTTGGTACCAAGGGAAACGATTGGCATATATTTACAAGGCTAAAGTGAAGAAGAATGGATCCCATTATCGTTGCATTTGGGGCAAAGTAGCAAGACCTCATGGTAACAGTGGCATCGTTAGAGCGAAGTTCAAGTCTAATCTCCCACCAAAGTCCATGGTATATAAAATAGAACACTATCTCATGTGTTAGCGTCAGACCTCTCTCTATCTTGGGTTTAACAAGTTTTTTTTTTTTTTTTTTACTTTTCTGTAGGGTGACAGGGTCAGAGTATTCATGTACCCCAGCAACATTTGAGGTAACTAGTTTCTTTATGTGCTGGAAACTTCTACATTTTTATATTTTTTCATTCTTTTCCCCCTCATGTTTGTATTAATGCTGTTCAATGTGTTCATTATGGGTTGTCTTTTGTGTTAAAGTGCGCTAGTCTAGTTTTCTAACTTTGATGGTACGAAATTGGTAGTTGAATTGCAATGTTCACCAATATGGGTTTGCTTTATGCGTTCACTAAATGCCTCACCAGTAGGTGGTTGCTTGCTATCAAATAATTTAGGGATTTTGATTAAGTAGTTTCTTTGTTTTAACCAATATGGGAATCCAGATTTTGTTCAGTAATCAATAATTCATTGAAATTTGACTGATTATGTGAATCGTGACTGCCTGCGCATGTGCATTCTATAATGTTTAATAGTTATGTTTGGACATGGGCCATTATGGTGTTTTCTTCATTGGTAGTTGCCAATTTCTTGTGGATAATGCCATCTTGCTGTGATTATGTTGAAACGAACATGTTATCTAGCAGTCCCACCTTGACTTAGGATCTAAATTTTGTCTTGATTTCTTGTTTGTTTGTGTTTTGATAATGTTGAATTTATCTGATTGCAATAGTTTCAAGTTAATTTGTGGGTGAAGTGCGAACAGTATAAGTAAAGACTGTGAACTGCATAACGTCCGTTGTACCCTTCTTCTATGGGTCTGTCTCAGAAAGTATAAAATTTTCCAATTAGATAATTTAAACATCATGTTTAAACCTTCATCTTGACTTTCTCTTTTCAATATAATTTTCTTCTATTTTTCTCAAGTAATTTTTATACATACGTGTTGTCTGTGAAGTAGTTGATTGGACGTTAAAATGTTTTGAAATGTTGTCTATTATATACCCTATGAGTAATTTGAGTGTAAAATAACTTTGGTGGATTCTTTTTCTTATCTTAGGATAGTGGTAAATAAACGACTTAAGTTTGATGAGGGCTTTGAGGGAATGATCGAGTTTAACTGATGGTGGCTGCATACCTAGTATTTAATATCCTATAGTTTTCTTGACCTAAAAGTTGTAGGTTCAGGTGGGATGTTCTAAAATTAGTCTGAGTGGCTTCAACACTAACACTCACCATTATTGAAGAAAAAGGCAAACCATTTTTTTTTAGTATATTTTTCAAGTGGCATATTTTTCTGGTTTGTTGACTACATTGCACGATCTATGTTTCTATTTCAAAATTGAATATTTAATTACATATGTTCATTTTTATTAACAGATGCTTATTTTGTCTTTGCAGCCTGGAGAACGGGATTGAAACAAGTGTTCGCTACATGAAGGGATTTAAATTTTTATTATATTTTGTGAGCTAAGATAGAAGCATTTTACGTTTCTGAACTGAGTCATTTTTTGCTGTTTAGGTAATGTTTAACACCCGAGTAGTTAAAACAGAATTATAGAACCATTTGTGTTGAGGATTGTCATGTGTTTAAGTGAATTGCACTTCTATCAAGTGGTTTTTCCGTATTAAAAGTCTCTATGCACATGCACTTCTTTAGCTATTATGAAGTCAGATTATGATTCTTATCGTAATTCTTTGGCTATCCTTTCTATACCACTTATGTGATTCACGTCATGACCTGACCTCTTGCTTGCAAAGCTTTTGTGTAGTTTCTTTTTTTTTTTGGTGCGACCACAAATTCTTTGTTGTGACCAACACCGACAAAATCACAAATCTAATCCAGCGTGCAGCTTGTTCTTTCTTCTCTCCCTCTATTTAGTGTGTGTTGGGGTGTCCATGTTGCGAGGTGAAACCACGAGGGCTCATTCTATGTGGTTCGTATTGGTAATTTTACCTGTGATGTGTATTAAAAAACGGCATCCCCAGATACAAAAATCCCATATTTTAGGGTATAGTATAATGCCTTAGCTGTCATGACATGCCTCGTTTTAGGGAATCAATTAGGGTGATATTCTTTTTTAGATGTAAGCAACTTGATGAATTTCTCTTTAAGTAAAGGTTCACATG

mRNA sequence

ATGGTGAAGGGAAGGCAAGGAGAGAGAGTCAGACTCTACACCAGGGGAACAATTCTCGGCTACAAGAGGTCGAAGTCGAACCAGTACCCAAACACTTCTTTACTCCAGATCGAGGGTGTTAATTCTAAGGATGAGGTTTCTTGGTACCAAGGGAAACGATTGGCATATATTTACAAGGCTAAAGTGAAGAAGAATGGATCCCATTATCGTTGCATTTGGGGCAAAGTAGCAAGACCTCATGGTAACAGTGGCATCGTTAGAGCGAAGTTCAAGTCTAATCTCCCACCAAAGTCCATGGGTGACAGGGTCAGAGTATTCATGTACCCCAGCAACATTTGA

Coding sequence (CDS)

ATGGTGAAGGGAAGGCAAGGAGAGAGAGTCAGACTCTACACCAGGGGAACAATTCTCGGCTACAAGAGGTCGAAGTCGAACCAGTACCCAAACACTTCTTTACTCCAGATCGAGGGTGTTAATTCTAAGGATGAGGTTTCTTGGTACCAAGGGAAACGATTGGCATATATTTACAAGGCTAAAGTGAAGAAGAATGGATCCCATTATCGTTGCATTTGGGGCAAAGTAGCAAGACCTCATGGTAACAGTGGCATCGTTAGAGCGAAGTTCAAGTCTAATCTCCCACCAAAGTCCATGGGTGACAGGGTCAGAGTATTCATGTACCCCAGCAACATTTGA

Protein sequence

MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGSHYRCIWGKVARPHGNSGIVRAKFKSNLPPKSMGDRVRVFMYPSNI*

Homology

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BLAST of CsaV3_5G008790 vs. NCBI nr
Match: XP_008463199.1 (PREDICTED: 60S ribosomal protein L35a-1 [Cucumis melo] >XP_011654980.1 60S ribosomal protein L35a-1 [Cucumis sativus] >KAA0037334.1 Ribosomal protein L35A [Cucumis melo var. makuwa] >KGN50623.1 hypothetical protein Csa_021400 [Cucumis sativus] >TYJ97573.1 Ribosomal protein L35A [Cucumis melo var. makuwa])

HSP 1 Score: 233.8 bits (595), Expect = 7.3e-58
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKA 60
           MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKA
Sbjct: 1   MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKA 60

Query: 61  KVKKNGSHYRCIWGKVARPHGNSGIVRAKFKSNLPPKSMGDRVRVFMYPSNI 113
           KVKKNGSHYRCIWGKVARPHGNSGIVRAKFKSNLPPKSMGDRVRVFMYPSNI
Sbjct: 61  KVKKNGSHYRCIWGKVARPHGNSGIVRAKFKSNLPPKSMGDRVRVFMYPSNI 112

[Close]

BLAST of CsaV3_5G008790 vs. NCBI nr
Match: XP_038891868.1 (60S ribosomal protein L35a-1 [Benincasa hispida])

HSP 1 Score: 232.3 bits (591), Expect = 2.1e-57
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKA 60
           MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKA
Sbjct: 1   MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKA 60

Query: 61  KVKKNGSHYRCIWGKVARPHGNSGIVRAKFKSNLPPKSMGDRVRVFMYPSNI 113
           KVKKNGSHYRCIWGKV RPHGNSGIVRAKFKSNLPPKSMGDRVRVFMYPSNI
Sbjct: 61  KVKKNGSHYRCIWGKVTRPHGNSGIVRAKFKSNLPPKSMGDRVRVFMYPSNI 112

[Close]

BLAST of CsaV3_5G008790 vs. NCBI nr
Match: XP_022957040.1 (60S ribosomal protein L35a-1 [Cucurbita moschata] >XP_022978196.1 60S ribosomal protein L35a-1-like [Cucurbita maxima] >XP_023529930.1 60S ribosomal protein L35a-1 [Cucurbita pepo subsp. pepo] >KAG7031585.1 60S ribosomal protein L35a-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 231.5 bits (589), Expect = 3.6e-57
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKA 60
           MVKG QGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKA
Sbjct: 1   MVKGSQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKA 60

Query: 61  KVKKNGSHYRCIWGKVARPHGNSGIVRAKFKSNLPPKSMGDRVRVFMYPSNI 113
           KVKKNGSHYRCIWGKVARPHGNSGIVRAKFKSNLPPKSMGDRVRVFMYPSNI
Sbjct: 61  KVKKNGSHYRCIWGKVARPHGNSGIVRAKFKSNLPPKSMGDRVRVFMYPSNI 112

[Close]

BLAST of CsaV3_5G008790 vs. NCBI nr
Match: XP_022156899.1 (60S ribosomal protein L35a-1 [Momordica charantia])

HSP 1 Score: 229.2 bits (583), Expect = 1.8e-56
Identity = 109/112 (97.32%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKA 60
           MVKGR+GERVRLY RGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKA
Sbjct: 1   MVKGREGERVRLYIRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKA 60

Query: 61  KVKKNGSHYRCIWGKVARPHGNSGIVRAKFKSNLPPKSMGDRVRVFMYPSNI 113
           KVKKNG+HYRCIWGKVARPHGNSGIVRAKFKSNLPPKSMGDRVRVFMYPSNI
Sbjct: 61  KVKKNGTHYRCIWGKVARPHGNSGIVRAKFKSNLPPKSMGDRVRVFMYPSNI 112

[Close]

BLAST of CsaV3_5G008790 vs. NCBI nr
Match: XP_022139205.1 (60S ribosomal protein L35a-1-like [Momordica charantia])

HSP 1 Score: 228.8 bits (582), Expect = 2.3e-56
Identity = 108/112 (96.43%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKA 60
           MVKGR+GERVRLY RGT+LGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKA
Sbjct: 1   MVKGREGERVRLYIRGTVLGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKA 60

Query: 61  KVKKNGSHYRCIWGKVARPHGNSGIVRAKFKSNLPPKSMGDRVRVFMYPSNI 113
           KVKKNG+HYRCIWGKVARPHGNSGIVRAKFKSNLPPKSMGDRVRVFMYPSNI
Sbjct: 61  KVKKNGTHYRCIWGKVARPHGNSGIVRAKFKSNLPPKSMGDRVRVFMYPSNI 112

[Close]

BLAST of CsaV3_5G008790 vs. ExPASy Swiss-Prot
Match: Q9LMK0 (60S ribosomal protein L35a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL35AA PE=3 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 4.6e-55
Identity = 99/112 (88.39%), Postives = 106/112 (94.64%), Query Frame = 0


Query: 1   MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKA 60
           MVKGRQGERVRLY RGTILGYKRSKSNQYPNTSL+Q+EGVN+ +EVSWY+GKR+AYIYKA
Sbjct: 1   MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQVEGVNTTEEVSWYKGKRMAYIYKA 60

Query: 61  KVKKNGSHYRCIWGKVARPHGNSGIVRAKFKSNLPPKSMGDRVRVFMYPSNI 113
           K KKNGSHYRCIWGKV RPHGNSG+VRAKF SNLPPKSMG RVRVFMYPSNI
Sbjct: 61  KTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112

[Close]

BLAST of CsaV3_5G008790 vs. ExPASy Swiss-Prot
Match: Q9C912 (60S ribosomal protein L35a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL35AC PE=3 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 4.6e-55
Identity = 99/112 (88.39%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 1   MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKA 60
           MVKGRQGERVRLY RGTILGYKRSKSNQYPNTSL+QIEGVN+++EV+WY+GKR+AYIYKA
Sbjct: 1   MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRMAYIYKA 60

Query: 61  KVKKNGSHYRCIWGKVARPHGNSGIVRAKFKSNLPPKSMGDRVRVFMYPSNI 113
           K KKNGSHYRCIWGKV RPHGNSG+VRAKF SNLPPKSMG RVRVFMYPSNI
Sbjct: 61  KTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112

[Close]

BLAST of CsaV3_5G008790 vs. ExPASy Swiss-Prot
Match: Q9FZH0 (60S ribosomal protein L35a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL35AB PE=3 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 8.7e-54
Identity = 96/111 (86.49%), Postives = 106/111 (95.50%), Query Frame = 0


Query: 2   VKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAK 61
           +KGRQGERVRLY RGT+LGYKRSKSNQYPNTSL+QIEGVN+++EV+WY+GKRLAYIYKAK
Sbjct: 1   MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTQEEVNWYKGKRLAYIYKAK 60

Query: 62  VKKNGSHYRCIWGKVARPHGNSGIVRAKFKSNLPPKSMGDRVRVFMYPSNI 113
            KKNGSHYRCIWGKV RPHGNSG+VR+KF SNLPPKSMG RVRVFMYPSNI
Sbjct: 61  TKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111

[Close]

BLAST of CsaV3_5G008790 vs. ExPASy Swiss-Prot
Match: P51422 (60S ribosomal protein L35a-4 OS=Arabidopsis thaliana OX=3702 GN=RPL35AD PE=3 SV=2)

HSP 1 Score: 210.3 bits (534), Expect = 1.1e-53
Identity = 96/111 (86.49%), Postives = 106/111 (95.50%), Query Frame = 0


Query: 2   VKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAK 61
           +KGRQGERVRLY RGT+LGYKRSKSNQYPNTSL+QIEGVN+++EV+WY+GKRLAYIYKAK
Sbjct: 1   MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRLAYIYKAK 60

Query: 62  VKKNGSHYRCIWGKVARPHGNSGIVRAKFKSNLPPKSMGDRVRVFMYPSNI 113
            KKNGSHYRCIWGKV RPHGNSG+VR+KF SNLPPKSMG RVRVFMYPSNI
Sbjct: 61  TKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111

[Close]

BLAST of CsaV3_5G008790 vs. ExPASy Swiss-Prot
Match: P41056 (60S ribosomal protein L33-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPL33B PE=1 SV=2)

HSP 1 Score: 122.1 bits (305), Expect = 4.1e-27
Identity = 57/105 (54.29%), Postives = 74/105 (70.48%), Query Frame = 0


Query: 8   ERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAKVKKNGS 67
           E  RLY +G  L Y+RSK    PN SL++IEGV +  E  +Y GKR+AY+Y+A  +  GS
Sbjct: 3   ESHRLYVKGKHLSYQRSKRVNNPNVSLIKIEGVATPQEAQFYLGKRIAYVYRASKEVRGS 62

Query: 68  HYRCIWGKVARPHGNSGIVRAKFKSNLPPKSMGDRVRVFMYPSNI 113
             R +WGKV R HGNSG+VRA F++NLP K+ G  VR+F+YPSNI
Sbjct: 63  KIRVMWGKVTRTHGNSGVVRATFRNNLPAKTFGASVRIFLYPSNI 107

[Close]

BLAST of CsaV3_5G008790 vs. ExPASy TrEMBL
Match: A0A5A7T1I6 (Ribosomal protein L35A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold85G00970 PE=3 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 3.5e-58
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKA 60
           MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKA
Sbjct: 1   MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKA 60

Query: 61  KVKKNGSHYRCIWGKVARPHGNSGIVRAKFKSNLPPKSMGDRVRVFMYPSNI 113
           KVKKNGSHYRCIWGKVARPHGNSGIVRAKFKSNLPPKSMGDRVRVFMYPSNI
Sbjct: 61  KVKKNGSHYRCIWGKVARPHGNSGIVRAKFKSNLPPKSMGDRVRVFMYPSNI 112

[Close]

BLAST of CsaV3_5G008790 vs. ExPASy TrEMBL
Match: A0A0A0KM11 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G198130 PE=3 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 3.5e-58
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKA 60
           MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKA
Sbjct: 1   MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKA 60

Query: 61  KVKKNGSHYRCIWGKVARPHGNSGIVRAKFKSNLPPKSMGDRVRVFMYPSNI 113
           KVKKNGSHYRCIWGKVARPHGNSGIVRAKFKSNLPPKSMGDRVRVFMYPSNI
Sbjct: 61  KVKKNGSHYRCIWGKVARPHGNSGIVRAKFKSNLPPKSMGDRVRVFMYPSNI 112

[Close]

BLAST of CsaV3_5G008790 vs. ExPASy TrEMBL
Match: A0A1S3CIN8 (60S ribosomal protein L35a-1 OS=Cucumis melo OX=3656 GN=LOC103501409 PE=3 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 3.5e-58
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKA 60
           MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKA
Sbjct: 1   MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKA 60

Query: 61  KVKKNGSHYRCIWGKVARPHGNSGIVRAKFKSNLPPKSMGDRVRVFMYPSNI 113
           KVKKNGSHYRCIWGKVARPHGNSGIVRAKFKSNLPPKSMGDRVRVFMYPSNI
Sbjct: 61  KVKKNGSHYRCIWGKVARPHGNSGIVRAKFKSNLPPKSMGDRVRVFMYPSNI 112

[Close]

BLAST of CsaV3_5G008790 vs. ExPASy TrEMBL
Match: A0A6J1IM24 (60S ribosomal protein L35a-1-like OS=Cucurbita maxima OX=3661 GN=LOC111478250 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.8e-57
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKA 60
           MVKG QGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKA
Sbjct: 1   MVKGSQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKA 60

Query: 61  KVKKNGSHYRCIWGKVARPHGNSGIVRAKFKSNLPPKSMGDRVRVFMYPSNI 113
           KVKKNGSHYRCIWGKVARPHGNSGIVRAKFKSNLPPKSMGDRVRVFMYPSNI
Sbjct: 61  KVKKNGSHYRCIWGKVARPHGNSGIVRAKFKSNLPPKSMGDRVRVFMYPSNI 112

[Close]

BLAST of CsaV3_5G008790 vs. ExPASy TrEMBL
Match: A0A6J1GZF1 (60S ribosomal protein L35a-1 OS=Cucurbita moschata OX=3662 GN=LOC111458531 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.8e-57
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKA 60
           MVKG QGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKA
Sbjct: 1   MVKGSQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKA 60

Query: 61  KVKKNGSHYRCIWGKVARPHGNSGIVRAKFKSNLPPKSMGDRVRVFMYPSNI 113
           KVKKNGSHYRCIWGKVARPHGNSGIVRAKFKSNLPPKSMGDRVRVFMYPSNI
Sbjct: 61  KVKKNGSHYRCIWGKVARPHGNSGIVRAKFKSNLPPKSMGDRVRVFMYPSNI 112

[Close]

BLAST of CsaV3_5G008790 vs. TAIR 10
Match: AT1G07070.1 (Ribosomal protein L35Ae family protein )

HSP 1 Score: 214.9 bits (546), Expect = 3.3e-56
Identity = 99/112 (88.39%), Postives = 106/112 (94.64%), Query Frame = 0


Query: 1   MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKA 60
           MVKGRQGERVRLY RGTILGYKRSKSNQYPNTSL+Q+EGVN+ +EVSWY+GKR+AYIYKA
Sbjct: 1   MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQVEGVNTTEEVSWYKGKRMAYIYKA 60

Query: 61  KVKKNGSHYRCIWGKVARPHGNSGIVRAKFKSNLPPKSMGDRVRVFMYPSNI 113
           K KKNGSHYRCIWGKV RPHGNSG+VRAKF SNLPPKSMG RVRVFMYPSNI
Sbjct: 61  KTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112

[Close]

BLAST of CsaV3_5G008790 vs. TAIR 10
Match: AT1G74270.1 (Ribosomal protein L35Ae family protein )

HSP 1 Score: 214.9 bits (546), Expect = 3.3e-56
Identity = 99/112 (88.39%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 1   MVKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKA 60
           MVKGRQGERVRLY RGTILGYKRSKSNQYPNTSL+QIEGVN+++EV+WY+GKR+AYIYKA
Sbjct: 1   MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRMAYIYKA 60

Query: 61  KVKKNGSHYRCIWGKVARPHGNSGIVRAKFKSNLPPKSMGDRVRVFMYPSNI 113
           K KKNGSHYRCIWGKV RPHGNSG+VRAKF SNLPPKSMG RVRVFMYPSNI
Sbjct: 61  KTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112

[Close]

BLAST of CsaV3_5G008790 vs. TAIR 10
Match: AT1G41880.1 (Ribosomal protein L35Ae family protein )

HSP 1 Score: 210.7 bits (535), Expect = 6.2e-55
Identity = 96/111 (86.49%), Postives = 106/111 (95.50%), Query Frame = 0


Query: 2   VKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAK 61
           +KGRQGERVRLY RGT+LGYKRSKSNQYPNTSL+QIEGVN+++EV+WY+GKRLAYIYKAK
Sbjct: 1   MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTQEEVNWYKGKRLAYIYKAK 60

Query: 62  VKKNGSHYRCIWGKVARPHGNSGIVRAKFKSNLPPKSMGDRVRVFMYPSNI 113
            KKNGSHYRCIWGKV RPHGNSG+VR+KF SNLPPKSMG RVRVFMYPSNI
Sbjct: 61  TKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111

[Close]

BLAST of CsaV3_5G008790 vs. TAIR 10
Match: AT3G55750.1 (Ribosomal protein L35Ae family protein )

HSP 1 Score: 210.3 bits (534), Expect = 8.1e-55
Identity = 96/111 (86.49%), Postives = 106/111 (95.50%), Query Frame = 0


Query: 2   VKGRQGERVRLYTRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYQGKRLAYIYKAK 61
           +KGRQGERVRLY RGT+LGYKRSKSNQYPNTSL+QIEGVN+++EV+WY+GKRLAYIYKAK
Sbjct: 1   MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRLAYIYKAK 60

Query: 62  VKKNGSHYRCIWGKVARPHGNSGIVRAKFKSNLPPKSMGDRVRVFMYPSNI 113
            KKNGSHYRCIWGKV RPHGNSG+VR+KF SNLPPKSMG RVRVFMYPSNI
Sbjct: 61  TKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111

The following BLAST results are available for this feature:

BLAST of CsaV3_5G008790 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008463199.1	7.3e-58	100.00	PREDICTED: 60S ribosomal protein L35a-1 [Cucumis melo] >XP_011654980.1 60S ribos...	[more]
XP_038891868.1	2.1e-57	99.11	60S ribosomal protein L35a-1 [Benincasa hispida]	[more]
XP_022957040.1	3.6e-57	99.11	60S ribosomal protein L35a-1 [Cucurbita moschata] >XP_022978196.1 60S ribosomal ...	[more]
XP_022156899.1	1.8e-56	97.32	60S ribosomal protein L35a-1 [Momordica charantia]	[more]
XP_022139205.1	2.3e-56	96.43	60S ribosomal protein L35a-1-like [Momordica charantia]	[more]

BLAST of CsaV3_5G008790 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LMK0	4.6e-55	88.39	60S ribosomal protein L35a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL35AA PE=3 SV=...	[more]
Q9C912	4.6e-55	88.39	60S ribosomal protein L35a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL35AC PE=3 SV=...	[more]
Q9FZH0	8.7e-54	86.49	60S ribosomal protein L35a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL35AB PE=3 SV=...	[more]
P51422	1.1e-53	86.49	60S ribosomal protein L35a-4 OS=Arabidopsis thaliana OX=3702 GN=RPL35AD PE=3 SV=...	[more]
P41056	4.1e-27	54.29	60S ribosomal protein L33-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2...	[more]

BLAST of CsaV3_5G008790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T1I6	3.5e-58	100.00	Ribosomal protein L35A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold8...	[more]
A0A0A0KM11	3.5e-58	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G198130 PE=3 SV=1	[more]
A0A1S3CIN8	3.5e-58	100.00	60S ribosomal protein L35a-1 OS=Cucumis melo OX=3656 GN=LOC103501409 PE=3 SV=1	[more]
A0A6J1IM24	1.8e-57	99.11	60S ribosomal protein L35a-1-like OS=Cucurbita maxima OX=3661 GN=LOC111478250 PE...	[more]
A0A6J1GZF1	1.8e-57	99.11	60S ribosomal protein L35a-1 OS=Cucurbita moschata OX=3662 GN=LOC111458531 PE=3 ...	[more]

BLAST of CsaV3_5G008790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07070.1	3.3e-56	88.39	Ribosomal protein L35Ae family protein	[more]
AT1G74270.1	3.3e-56	88.39	Ribosomal protein L35Ae family protein	[more]
AT1G41880.1	6.2e-55	86.49	Ribosomal protein L35Ae family protein	[more]
AT3G55750.1	8.1e-55	86.49	Ribosomal protein L35Ae family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038661	Ribosomal protein L35A superfamily	GENE3D	2.40.10.190	translation elongation factor selb, chain A, domain 4	coord: 6..112 e-value: 7.8E-51 score: 172.6
IPR001780	Ribosomal protein L35A	PFAM	PF01247	Ribosomal_L35Ae	coord: 12..106 e-value: 1.0E-43 score: 147.4
IPR001780	Ribosomal protein L35A	PANTHER	PTHR10902	60S RIBOSOMAL PROTEIN L35A	coord: 1..112
IPR001780	Ribosomal protein L35A	HAMAP	MF_00573	Ribosomal_L35Ae	coord: 14..106 score: 25.07453
None	No IPR available	PANTHER	PTHR10902:SF20	60S RIBOSOMAL PROTEIN L35A-1	coord: 1..112
IPR018266	Ribosomal protein L35Ae, conserved site	PROSITE	PS01105	RIBOSOMAL_L35AE	coord: 74..95
IPR009000	Translation protein, beta-barrel domain superfamily	SUPERFAMILY	50447	Translation proteins	coord: 12..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G008790.1	CsaV3_5G008790.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome