CsaV3_5G008730 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G008730
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5: 5421218 .. 5421539 (+)
RNA-Seq ExpressionCsaV3_5G008730
SyntenyCsaV3_5G008730
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTTGGGATTATCAACACCTGAAGACCTTGTTGTTACTTATCCATCCTCTAAACAATTGGCTGTAGAACTCACTTGTGGCACAGTTCGCTCTTGGCTTATAGATGGTCAACTGTCTATGCTTCGTTGAGCATCAAGTATGCCATTCGGCATAAAATAGCATCCTACCATTTTGTCCTGCTCCTAGTGGTTCCAGCTCCTCTTTCACTGATATTCCTGTTTCCACTACTGGATTGATGCTTCTTGCTTCCATGGTATATCTCAGGTACTTCAAGTCTTTTCTGTGCCTTTCTACTACTGTTTCTATGCCTCCTTCTTAG

mRNA sequence

ATGTTTTTGGGATTATCAACACCTGAAGACCTTGTTGTTACTTATCCATCCTCTAAACAATTGGCTGTAGAACTCACTTGTGGCACAGTTCGCTCTTGGCTTATAGATGGTCAACTTGGTTCCAGCTCCTCTTTCACTGATATTCCTGTTTCCACTACTGGATTGATGCTTCTTGCTTCCATGGTATATCTCAGGTACTTCAAGTCTTTTCTGTGCCTTTCTACTACTGTTTCTATGCCTCCTTCTTAG

Coding sequence (CDS)

ATGTTTTTGGGATTATCAACACCTGAAGACCTTGTTGTTACTTATCCATCCTCTAAACAATTGGCTGTAGAACTCACTTGTGGCACAGTTCGCTCTTGGCTTATAGATGGTCAACTTGGTTCCAGCTCCTCTTTCACTGATATTCCTGTTTCCACTACTGGATTGATGCTTCTTGCTTCCATGGTATATCTCAGGTACTTCAAGTCTTTTCTGTGCCTTTCTACTACTGTTTCTATGCCTCCTTCTTAG

Protein sequence

MFLGLSTPEDLVVTYPSSKQLAVELTCGTVRSWLIDGQLGSSSSFTDIPVSTTGLMLLASMVYLRYFKSFLCLSTTVSMPPS*
Homology
[Close]
BLAST of CsaV3_5G008730 vs. NCBI nr
Match: KGN50616.1 (hypothetical protein Csa_021419 [Cucumis sativus])

HSP 1 Score: 163.3 bits (412), Expect = 8.9e-37
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MFLGLSTPEDLVVTYPSSKQLAVELTCGTVRSWLIDGQLGSSSSFTDIPVSTTGLMLLAS 60
          MFLGLSTPEDLVVTYPSSKQLAVELTCGTVRSWLIDGQLGSSSSFTDIPVSTTGLMLLAS
Sbjct: 1  MFLGLSTPEDLVVTYPSSKQLAVELTCGTVRSWLIDGQLGSSSSFTDIPVSTTGLMLLAS 60

Query: 61 MVYLRYFKSFLCLSTTVSMPPS 83
          MVYLRYFKSFLCLSTTVSMPPS
Sbjct: 61 MVYLRYFKSFLCLSTTVSMPPS 82

[Close]
BLAST of CsaV3_5G008730 vs. NCBI nr
Match: TYK30713.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-04
Identity = 30/42 (71.43%), Postives = 32/42 (76.19%), Query Frame = 0 

Query: 2   FLGLSTPEDLVVTYPSSKQLAVELTCGTVRSWLIDGQLGSSS 44
           FLGLS   DLVVTY S++QLAVEL  GTVRSW  DGQL S S
Sbjct: 338 FLGLSVAHDLVVTYLSNEQLAVELMRGTVRSWPCDGQLPSVS 379

[Close]
BLAST of CsaV3_5G008730 vs. ExPASy TrEMBL
Match: A0A0A0KSB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G196590 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 4.3e-37
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0 

Query: 1  MFLGLSTPEDLVVTYPSSKQLAVELTCGTVRSWLIDGQLGSSSSFTDIPVSTTGLMLLAS 60
          MFLGLSTPEDLVVTYPSSKQLAVELTCGTVRSWLIDGQLGSSSSFTDIPVSTTGLMLLAS
Sbjct: 1  MFLGLSTPEDLVVTYPSSKQLAVELTCGTVRSWLIDGQLGSSSSFTDIPVSTTGLMLLAS 60

Query: 61 MVYLRYFKSFLCLSTTVSMPPS 83
          MVYLRYFKSFLCLSTTVSMPPS
Sbjct: 61 MVYLRYFKSFLCLSTTVSMPPS 82

[Close]
BLAST of CsaV3_5G008730 vs. ExPASy TrEMBL
Match: A0A5D3E3L4 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G00410 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.7e-05
Identity = 30/42 (71.43%), Postives = 32/42 (76.19%), Query Frame = 0 

Query: 2   FLGLSTPEDLVVTYPSSKQLAVELTCGTVRSWLIDGQLGSSS 44
           FLGLS   DLVVTY S++QLAVEL  GTVRSW  DGQL S S
Sbjct: 338 FLGLSVAHDLVVTYLSNEQLAVELMRGTVRSWPCDGQLPSVS 379

The following BLAST results are available for this feature:
BLAST of CsaV3_5G008730 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50616.18.9e-37100.00hypothetical protein Csa_021419 [Cucumis sativus][more]
TYK30713.11.2e-0471.43putative mitochondrial protein [Cucumis melo var. makuwa][more]
BLAST of CsaV3_5G008730 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G008730 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KSB64.3e-37100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G196590 PE=4 SV=1[more]
A0A5D3E3L45.7e-0571.43Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
BLAST of CsaV3_5G008730 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G008730.1CsaV3_5G008730.1mRNA