CsaV3_5G008310 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G008310
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5: 5011456 .. 5011689 (-)
RNA-Seq ExpressionCsaV3_5G008310
SyntenyCsaV3_5G008310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCAAAGTGAGGAATGGGGGATTATGGTGTTGTGGTGGGGGGCTATTTGCTTTTAAACCCCTCCTTTGCTTTTTGGCGGTGATCTTCTTCTTCTTCTTCATCCTCACAATAATCCCCAATCCAAAAAACTTTAACCCCTCTTTGGCTTTGGCCCCCTTTCAATACCTTTGTCGGTACTCTCAGACTGTGACCTCGAACCCCACACTTCCCCCATTCTCCTCCAAATCATAG

mRNA sequence

ATGAGCAAAGTGAGGAATGGGGGATTATGGTGTTGTGGTGGGGGGCTATTTGCTTTTAAACCCCTCCTTTGCTTTTTGGCGGTGATCTTCTTCTTCTTCTTCATCCTCACAATAATCCCCAATCCAAAAAACTTTAACCCCTCTTTGGCTTTGGCCCCCTTTCAATACCTTTGTCGGTACTCTCAGACTGTGACCTCGAACCCCACACTTCCCCCATTCTCCTCCAAATCATAG

Coding sequence (CDS)

ATGAGCAAAGTGAGGAATGGGGGATTATGGTGTTGTGGTGGGGGGCTATTTGCTTTTAAACCCCTCCTTTGCTTTTTGGCGGTGATCTTCTTCTTCTTCTTCATCCTCACAATAATCCCCAATCCAAAAAACTTTAACCCCTCTTTGGCTTTGGCCCCCTTTCAATACCTTTGTCGGTACTCTCAGACTGTGACCTCGAACCCCACACTTCCCCCATTCTCCTCCAAATCATAG

Protein sequence

MSKVRNGGLWCCGGGLFAFKPLLCFLAVIFFFFFILTIIPNPKNFNPSLALAPFQYLCRYSQTVTSNPTLPPFSSKS*
Homology
[Close]
BLAST of CsaV3_5G008310 vs. NCBI nr
Match: KGN50572.1 (hypothetical protein Csa_021457 [Cucumis sativus])

HSP 1 Score: 162.9 bits (411), Expect = 1.1e-36
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MSKVRNGGLWCCGGGLFAFKPLLCFLAVIFFFFFILTIIPNPKNFNPSLALAPFQYLCRY 60
          MSKVRNGGLWCCGGGLFAFKPLLCFLAVIFFFFFILTIIPNPKNFNPSLALAPFQYLCRY
Sbjct: 1  MSKVRNGGLWCCGGGLFAFKPLLCFLAVIFFFFFILTIIPNPKNFNPSLALAPFQYLCRY 60

Query: 61 SQTVTSNPTLPPFSSKS 78
          SQTVTSNPTLPPFSSKS
Sbjct: 61 SQTVTSNPTLPPFSSKS 77

[Close]
BLAST of CsaV3_5G008310 vs. ExPASy TrEMBL
Match: A0A0A0KQB2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G182765 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 5.3e-37
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MSKVRNGGLWCCGGGLFAFKPLLCFLAVIFFFFFILTIIPNPKNFNPSLALAPFQYLCRY 60
          MSKVRNGGLWCCGGGLFAFKPLLCFLAVIFFFFFILTIIPNPKNFNPSLALAPFQYLCRY
Sbjct: 1  MSKVRNGGLWCCGGGLFAFKPLLCFLAVIFFFFFILTIIPNPKNFNPSLALAPFQYLCRY 60

Query: 61 SQTVTSNPTLPPFSSKS 78
          SQTVTSNPTLPPFSSKS
Sbjct: 61 SQTVTSNPTLPPFSSKS 77

The following BLAST results are available for this feature:
BLAST of CsaV3_5G008310 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50572.11.1e-36100.00hypothetical protein Csa_021457 [Cucumis sativus][more]
BLAST of CsaV3_5G008310 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G008310 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQB25.3e-37100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G182765 PE=4 SV=1[more]
BLAST of CsaV3_5G008310 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G008310.1CsaV3_5G008310.1mRNA