CsaV3_5G006880 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G006880
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Transcription termination factor MTERF5
Location	chr5: 4594962 .. 4595480 (+)
RNA-Seq Expression	CsaV3_5G006880
Synteny	CsaV3_5G006880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGAAAGGTTGATAGAATGATCCAAGTAGTGAAAACGGTTAAAGAATTGGGCATTGAACCAAAGGCCTGTATGTTTGTTTATGCACTGAAAGTAAGGAGTACAATGAGTGAATCAACTTGGAAGAAGAAAATAGATGTTTTGAAGAGTTTAGGATGGTCTGAGAATGAGATTTTTACACTATTTAAGAGACAGCCAATGTCTTTAGCTCGTTCAGAGGAGGCACTGAGGGATGTTGCAGATTTCTGTTTCAACACTATAAAATTGGATCCAGGAACAGTAATTTCTAATCCTAGGTTATTCATGTATTCAGTCGACAAGCGGCTCCGGCCAAGGTACAAAGTTCTTGAGCTTTTGAAGCTCAAGAATCTTCTTAAGAACAAAAAAATTGCTCCCCTCCTTGTACGAGGAGAGAGTGAATTTGTGGAGAATTATGTTCTTAAGCATTTGGATGAAATACCAAAGCTAATGGACATATATCGAGGCAATGTCACAGCCGAAACCAGTTCTGTTCTATAG

mRNA sequence

ATGCGAAAGGTTGATAGAATGATCCAAGTAGTGAAAACGGTTAAAGAATTGGGCATTGAACCAAAGGCCTGTATGTTTGTTTATGCACTGAAAGTAAGGAGTACAATGAGTGAATCAACTTGGAAGAAGAAAATAGATGTTTTGAAGAGTTTAGGATGGTCTGAGAATGAGATTTTTACACTATTTAAGAGACAGCCAATGTCTTTAGCTCGTTCAGAGGAGGCACTGAGGGATGTTGCAGATTTCTGTTTCAACACTATAAAATTGGATCCAGGAACAGTAATTTCTAATCCTAGGTTATTCATGTATTCAGTCGACAAGCGGCTCCGGCCAAGGTACAAAGTTCTTGAGCTTTTGAAGCTCAAGAATCTTCTTAAGAACAAAAAAATTGCTCCCCTCCTTGTACGAGGAGAGAGTGAATTTGTGGAGAATTATGTTCTTAAGCATTTGGATGAAATACCAAAGCTAATGGACATATATCGAGGCAATGTCACAGCCGAAACCAGTTCTGTTCTATAG

Coding sequence (CDS)

ATGCGAAAGGTTGATAGAATGATCCAAGTAGTGAAAACGGTTAAAGAATTGGGCATTGAACCAAAGGCCTGTATGTTTGTTTATGCACTGAAAGTAAGGAGTACAATGAGTGAATCAACTTGGAAGAAGAAAATAGATGTTTTGAAGAGTTTAGGATGGTCTGAGAATGAGATTTTTACACTATTTAAGAGACAGCCAATGTCTTTAGCTCGTTCAGAGGAGGCACTGAGGGATGTTGCAGATTTCTGTTTCAACACTATAAAATTGGATCCAGGAACAGTAATTTCTAATCCTAGGTTATTCATGTATTCAGTCGACAAGCGGCTCCGGCCAAGGTACAAAGTTCTTGAGCTTTTGAAGCTCAAGAATCTTCTTAAGAACAAAAAAATTGCTCCCCTCCTTGTACGAGGAGAGAGTGAATTTGTGGAGAATTATGTTCTTAAGCATTTGGATGAAATACCAAAGCTAATGGACATATATCGAGGCAATGTCACAGCCGAAACCAGTTCTGTTCTATAG

Protein sequence

MRKVDRMIQVVKTVKELGIEPKACMFVYALKVRSTMSESTWKKKIDVLKSLGWSENEIFTLFKRQPMSLARSEEALRDVADFCFNTIKLDPGTVISNPRLFMYSVDKRLRPRYKVLELLKLKNLLKNKKIAPLLVRGESEFVENYVLKHLDEIPKLMDIYRGNVTAETSSVL*

Homology

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BLAST of CsaV3_5G006880 vs. NCBI nr
Match: KAE8647981.1 (hypothetical protein Csa_000499 [Cucumis sativus])

HSP 1 Score: 337.4 bits (864), Expect = 7.2e-89
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MRKVDRMIQVVKTVKELGIEPKACMFVYALKVRSTMSESTWKKKIDVLKSLGWSENEIFT 60
           MRKVDRMIQVVKTVKELGIEPKACMFVYALKVRSTMSESTWKKKIDVLKSLGWSENEIFT
Sbjct: 1   MRKVDRMIQVVKTVKELGIEPKACMFVYALKVRSTMSESTWKKKIDVLKSLGWSENEIFT 60

Query: 61  LFKRQPMSLARSEEALRDVADFCFNTIKLDPGTVISNPRLFMYSVDKRLRPRYKVLELLK 120
           LFKRQPMSLARSEEALRDVADFCFNTIKLDPGTVISNPRLFMYSVDKRLRPRYKVLELLK
Sbjct: 61  LFKRQPMSLARSEEALRDVADFCFNTIKLDPGTVISNPRLFMYSVDKRLRPRYKVLELLK 120

Query: 121 LKNLLKNKKIAPLLVRGESEFVENYVLKHLDEIPKLMDIYRGNVTAETSSVL 173
           LKNLLKNKKIAPLLVRGESEFVENYVLKHLDEIPKLMDIYRGNVTAETSSVL
Sbjct: 121 LKNLLKNKKIAPLLVRGESEFVENYVLKHLDEIPKLMDIYRGNVTAETSSVL 172

[Close]

BLAST of CsaV3_5G006880 vs. NCBI nr
Match: XP_031741246.1 (transcription termination factor MTERF5, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 337.4 bits (864), Expect = 7.2e-89
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MRKVDRMIQVVKTVKELGIEPKACMFVYALKVRSTMSESTWKKKIDVLKSLGWSENEIFT 60
           MRKVDRMIQVVKTVKELGIEPKACMFVYALKVRSTMSESTWKKKIDVLKSLGWSENEIFT
Sbjct: 91  MRKVDRMIQVVKTVKELGIEPKACMFVYALKVRSTMSESTWKKKIDVLKSLGWSENEIFT 150

Query: 61  LFKRQPMSLARSEEALRDVADFCFNTIKLDPGTVISNPRLFMYSVDKRLRPRYKVLELLK 120
           LFKRQPMSLARSEEALRDVADFCFNTIKLDPGTVISNPRLFMYSVDKRLRPRYKVLELLK
Sbjct: 151 LFKRQPMSLARSEEALRDVADFCFNTIKLDPGTVISNPRLFMYSVDKRLRPRYKVLELLK 210

Query: 121 LKNLLKNKKIAPLLVRGESEFVENYVLKHLDEIPKLMDIYRGNVTAETSSVL 173
           LKNLLKNKKIAPLLVRGESEFVENYVLKHLDEIPKLMDIYRGNVTAETSSVL
Sbjct: 211 LKNLLKNKKIAPLLVRGESEFVENYVLKHLDEIPKLMDIYRGNVTAETSSVL 262

[Close]

BLAST of CsaV3_5G006880 vs. NCBI nr
Match: XP_038892570.1 (transcription termination factor MTERF9, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 260.4 bits (664), Expect = 1.1e-65
Identity = 130/172 (75.58%), Postives = 147/172 (85.47%), Query Frame = 0


Query: 1   MRKVDRMIQVVKTVKELGIEPKACMFVYALKVRSTMSESTWKKKIDVLKSLGWSENEIFT 60
           M+ VDRM+  VKTVKELGIEP A MFVYA+KV  +M +STWKKKI+VLKSLGWSE EIF 
Sbjct: 225 MQMVDRMVYAVKTVKELGIEPNAHMFVYAVKVMVSMKDSTWKKKINVLKSLGWSEKEIFA 284

Query: 61  LFKRQPMSLARSEEALRDVADFCFNTIKLDPGTVISNPRLFMYSVDKRLRPRYKVLELLK 120
            FKR+P+ LARSEE +RDVADFC NT KLDPGTVIS P+ FM ++DKRLRPRYKVLE+LK
Sbjct: 285 AFKREPLCLARSEEKMRDVADFCLNTAKLDPGTVISYPKFFMCALDKRLRPRYKVLEVLK 344

Query: 121 LKNLLKNKKIAPLLVRGESEFVENYVLKHLDEIPKLMDIYRGNVTAETSSVL 173
            KNLLKNKKIA +L++GE  FVENY+LKHLDEIP LMDIYRGNV AET SVL
Sbjct: 345 AKNLLKNKKIAWVLLQGERNFVENYILKHLDEIPDLMDIYRGNVAAETRSVL 396

[Close]

BLAST of CsaV3_5G006880 vs. NCBI nr
Match: XP_011654901.1 (uncharacterized protein LOC101206293 [Cucumis sativus] >KAE8647959.1 hypothetical protein Csa_000643 [Cucumis sativus])

HSP 1 Score: 258.8 bits (660), Expect = 3.2e-65
Identity = 134/172 (77.91%), Postives = 148/172 (86.05%), Query Frame = 0


Query: 1   MRKVDRMIQVVKTVKELGIEPKACMFVYALKVRSTMSESTWKKKIDVLKSLGWSENEIFT 60
           M  VDRMIQVVK VKELGIEPK+  F++AL+VR  MS+STWKKKI+VLKSLGWSENEI T
Sbjct: 203 MHTVDRMIQVVKMVKELGIEPKSARFLHALRVRCAMSDSTWKKKINVLKSLGWSENEILT 262

Query: 61  LFKRQPMSLARSEEALRDVADFCFNTIKLDPGTVISNPRLFMYSVDKRLRPRYKVLELLK 120
           LFKRQP+ LARSEEA RDVADFCFNT KLDP TVIS P+ F YSVDK L PRYKVLE+LK
Sbjct: 263 LFKRQPICLARSEEAFRDVADFCFNTAKLDPETVISYPKFFTYSVDK-LWPRYKVLEVLK 322

Query: 121 LKNLLKNKKIAPLLVRGESEFVENYVLKHLDEIPKLMDIYRGNVTAETSSVL 173
           +KNLLK++K+A  L   E +FVE YVLKHLDEIPKLMDIYRGNVTAETSSVL
Sbjct: 323 VKNLLKDRKVARALTLVERQFVETYVLKHLDEIPKLMDIYRGNVTAETSSVL 373

[Close]

BLAST of CsaV3_5G006880 vs. NCBI nr
Match: KAA0034116.1 (transcription termination factor MTERF2 [Cucumis melo var. makuwa])

HSP 1 Score: 253.4 bits (646), Expect = 1.4e-63
Identity = 129/172 (75.00%), Postives = 144/172 (83.72%), Query Frame = 0


Query: 1   MRKVDRMIQVVKTVKELGIEPKACMFVYALKVRSTMSESTWKKKIDVLKSLGWSENEIFT 60
           M+KVDR+I  VKTVKELGIEPKA  FVYA+ VR +MS+STWKKKI+V+KSLGWS+ EIFT
Sbjct: 202 MQKVDRLIPAVKTVKELGIEPKARTFVYAVVVRLSMSDSTWKKKINVMKSLGWSDKEIFT 261

Query: 61  LFKRQPMSLARSEEALRDVADFCFNTIKLDPGTVISNPRLFMYSVDKRLRPRYKVLELLK 120
            FKR P  L  SEE +RDVADFCFNT KLDPGT+IS P+LF  S DKRLRPRYKVLE+LK
Sbjct: 262 AFKRHPNYLGCSEEKIRDVADFCFNTAKLDPGTLISYPKLFKLSFDKRLRPRYKVLEVLK 321

Query: 121 LKNLLKNKKIAPLLVRGESEFVENYVLKHLDEIPKLMDIYRGNVTAETSSVL 173
           +KNLLKNKKIA +LV GE  FVE YV+KHLDEIP LMDIY GNV AET SVL
Sbjct: 322 VKNLLKNKKIASVLVEGERRFVEKYVVKHLDEIPNLMDIYVGNVEAETKSVL 373

[Close]

BLAST of CsaV3_5G006880 vs. ExPASy TrEMBL
Match: A0A5D3CXX8 (Transcription termination factor MTERF2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G003080 PE=3 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 6.6e-64
Identity = 129/172 (75.00%), Postives = 144/172 (83.72%), Query Frame = 0


Query: 1   MRKVDRMIQVVKTVKELGIEPKACMFVYALKVRSTMSESTWKKKIDVLKSLGWSENEIFT 60
           M+KVDR+I  VKTVKELGIEPKA  FVYA+ VR +MS+STWKKKI+V+KSLGWS+ EIFT
Sbjct: 202 MQKVDRLIPAVKTVKELGIEPKARTFVYAVVVRLSMSDSTWKKKINVMKSLGWSDKEIFT 261

Query: 61  LFKRQPMSLARSEEALRDVADFCFNTIKLDPGTVISNPRLFMYSVDKRLRPRYKVLELLK 120
            FKR P  L  SEE +RDVADFCFNT KLDPGT+IS P+LF  S DKRLRPRYKVLE+LK
Sbjct: 262 AFKRHPNYLGCSEEKIRDVADFCFNTAKLDPGTLISYPKLFKLSFDKRLRPRYKVLEVLK 321

Query: 121 LKNLLKNKKIAPLLVRGESEFVENYVLKHLDEIPKLMDIYRGNVTAETSSVL 173
           +KNLLKNKKIA +LV GE  FVE YV+KHLDEIP LMDIY GNV AET SVL
Sbjct: 322 VKNLLKNKKIASVLVEGERRFVEKYVVKHLDEIPNLMDIYVGNVEAETKSVL 373

[Close]

BLAST of CsaV3_5G006880 vs. ExPASy TrEMBL
Match: A0A5A7SW09 (Transcription termination factor MTERF2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G001070 PE=3 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 6.6e-64
Identity = 129/172 (75.00%), Postives = 144/172 (83.72%), Query Frame = 0


Query: 1   MRKVDRMIQVVKTVKELGIEPKACMFVYALKVRSTMSESTWKKKIDVLKSLGWSENEIFT 60
           M+KVDR+I  VKTVKELGIEPKA  FVYA+ VR +MS+STWKKKI+V+KSLGWS+ EIFT
Sbjct: 202 MQKVDRLIPAVKTVKELGIEPKARTFVYAVVVRLSMSDSTWKKKINVMKSLGWSDKEIFT 261

Query: 61  LFKRQPMSLARSEEALRDVADFCFNTIKLDPGTVISNPRLFMYSVDKRLRPRYKVLELLK 120
            FKR P  L  SEE +RDVADFCFNT KLDPGT+IS P+LF  S DKRLRPRYKVLE+LK
Sbjct: 262 AFKRHPNYLGCSEEKIRDVADFCFNTAKLDPGTLISYPKLFKLSFDKRLRPRYKVLEVLK 321

Query: 121 LKNLLKNKKIAPLLVRGESEFVENYVLKHLDEIPKLMDIYRGNVTAETSSVL 173
           +KNLLKNKKIA +LV GE  FVE YV+KHLDEIP LMDIY GNV AET SVL
Sbjct: 322 VKNLLKNKKIASVLVEGERRFVEKYVVKHLDEIPNLMDIYVGNVEAETKSVL 373

[Close]

BLAST of CsaV3_5G006880 vs. ExPASy TrEMBL
Match: A0A1S3BDE1 (transcription termination factor MTERF2, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103488812 PE=3 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 6.6e-64
Identity = 129/172 (75.00%), Postives = 144/172 (83.72%), Query Frame = 0


Query: 1   MRKVDRMIQVVKTVKELGIEPKACMFVYALKVRSTMSESTWKKKIDVLKSLGWSENEIFT 60
           M+KVDR+I  VKTVKELGIEPKA  FVYA+ VR +MS+STWKKKI+V+KSLGWS+ EIFT
Sbjct: 202 MQKVDRLIPAVKTVKELGIEPKARTFVYAVVVRLSMSDSTWKKKINVMKSLGWSDKEIFT 261

Query: 61  LFKRQPMSLARSEEALRDVADFCFNTIKLDPGTVISNPRLFMYSVDKRLRPRYKVLELLK 120
            FKR P  L  SEE +RDVADFCFNT KLDPGT+IS P+LF  S DKRLRPRYKVLE+LK
Sbjct: 262 AFKRHPNYLGCSEEKIRDVADFCFNTAKLDPGTLISYPKLFKLSFDKRLRPRYKVLEVLK 321

Query: 121 LKNLLKNKKIAPLLVRGESEFVENYVLKHLDEIPKLMDIYRGNVTAETSSVL 173
           +KNLLKNKKIA +LV GE  FVE YV+KHLDEIP LMDIY GNV AET SVL
Sbjct: 322 VKNLLKNKKIASVLVEGERRFVEKYVVKHLDEIPNLMDIYVGNVEAETKSVL 373

[Close]

BLAST of CsaV3_5G006880 vs. ExPASy TrEMBL
Match: A0A5D3CWA2 (Transcription termination factor MTERF5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002480 PE=3 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 7.3e-63
Identity = 125/172 (72.67%), Postives = 148/172 (86.05%), Query Frame = 0


Query: 1   MRKVDRMIQVVKTVKELGIEPKACMFVYALKVRSTMSESTWKKKIDVLKSLGWSENEIFT 60
           MRKVDRMI+VVKTVKELGIEPKA MFV+AL++R ++S+STWKKKI+V+KSLGWSE EIFT
Sbjct: 202 MRKVDRMIEVVKTVKELGIEPKAGMFVHALRIRCSVSDSTWKKKINVMKSLGWSETEIFT 261

Query: 61  LFKRQPMSLARSEEALRDVADFCFNTIKLDPGTVISNPRLFMYSVDKRLRPRYKVLELLK 120
            FK+ P  L  SEE +RDVADFCFNT KLDPG+VI  P++F  SVDKRL+PRYKVLE+LK
Sbjct: 262 AFKKDPSFLGCSEEKMRDVADFCFNTAKLDPGSVIICPKIFKCSVDKRLQPRYKVLEVLK 321

Query: 121 LKNLLKNKKIAPLLVRGESEFVENYVLKHLDEIPKLMDIYRGNVTAETSSVL 173
           +KNLLKN  IA +LV+ E  FV+ +V++HLDEIP LMDIYRGNVTAET SVL
Sbjct: 322 VKNLLKNVNIAWVLVQSERAFVKKFVVRHLDEIPNLMDIYRGNVTAETKSVL 373

[Close]

BLAST of CsaV3_5G006880 vs. ExPASy TrEMBL
Match: A0A1S3BEQ3 (uncharacterized protein LOC103488865 OS=Cucumis melo OX=3656 GN=LOC103488865 PE=3 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 7.3e-63
Identity = 125/172 (72.67%), Postives = 148/172 (86.05%), Query Frame = 0


Query: 1   MRKVDRMIQVVKTVKELGIEPKACMFVYALKVRSTMSESTWKKKIDVLKSLGWSENEIFT 60
           MRKVDRMI+VVKTVKELGIEPKA MFV+AL++R ++S+STWKKKI+V+KSLGWSE EIFT
Sbjct: 202 MRKVDRMIEVVKTVKELGIEPKAGMFVHALRIRCSVSDSTWKKKINVMKSLGWSETEIFT 261

Query: 61  LFKRQPMSLARSEEALRDVADFCFNTIKLDPGTVISNPRLFMYSVDKRLRPRYKVLELLK 120
            FK+ P  L  SEE +RDVADFCFNT KLDPG+VI  P++F  SVDKRL+PRYKVLE+LK
Sbjct: 262 AFKKDPSFLGCSEEKMRDVADFCFNTAKLDPGSVIICPKIFKCSVDKRLQPRYKVLEVLK 321

Query: 121 LKNLLKNKKIAPLLVRGESEFVENYVLKHLDEIPKLMDIYRGNVTAETSSVL 173
           +KNLLKN  IA +LV+ E  FV+ +V++HLDEIP LMDIYRGNVTAET SVL
Sbjct: 322 VKNLLKNVNIAWVLVQSERAFVKKFVVRHLDEIPNLMDIYRGNVTAETKSVL 373

[Close]

BLAST of CsaV3_5G006880 vs. TAIR 10
Match: AT1G21150.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 86.7 bits (213), Expect = 2.1e-17
Identity = 48/160 (30.00%), Postives = 85/160 (53.12%), Query Frame = 0


Query: 6   RMIQVVKTVKELGIEPKACMFVYALKVRSTMSESTWKKKIDVLKSLGWSENEIFTLFKRQ 65
           R  +V+  V   G +PK   FV+A+      SES  ++K  + +  GWS+ +      R 
Sbjct: 230 RFNEVLNRVCSYGFDPKKAGFVHAMVAFDCTSESAMERKFKLFQCFGWSKEDFVAAIMRF 289

Query: 66  PMSLARSEEALRDVADFCFNTIKLDPGTVISNPRLFMYSVDKRLRPRYKVLELLKLKNLL 125
           P  +  S+E +    ++  N I L    +++ P +   S++KR++PR +V+ LL  K L+
Sbjct: 290 PNCVTVSDEKIMYTLEYLVNNIGLQARDIVARPVVLSLSMEKRIKPRNQVISLLLSKGLV 349

Query: 126 KNKKI--APLLVRGESEFVENYVLKHLDEIPKLMDIYRGN 164
           K + I    +L    SEF++ +VLK+ DE+P+L+  +  N
Sbjct: 350 KKEDINYFTILKLKSSEFMDKFVLKYQDEMPQLVQPFTSN 389

[Close]

BLAST of CsaV3_5G006880 vs. TAIR 10
Match: AT1G61970.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 80.1 bits (196), Expect = 1.9e-15
Identity = 55/198 (27.78%), Postives = 98/198 (49.49%), Query Frame = 0


Query: 5   DRMIQVVKTVKELGIEPKACMFVYALKVRSTMSESTWKKKIDVLKSLGWSENEIFTLFKR 64
           ++  + +K V E+G +P    FV AL+V   M+E T ++K+ + KSLG+   ++++ FK+
Sbjct: 221 EKFEETLKKVVEMGFDPTTSKFVEALQVIYKMNEKTIEEKVHLYKSLGFDVGDVWSSFKK 280

Query: 65  QPMSLARSE-----------------------------------EALRDVADFCFNTIKL 124
            P+SL  SE                                   E ++   +F    +  
Sbjct: 281 WPISLRVSEKKMLDSIETFLGLGFSRDEFAKMVKHFPPCIGLSTETVKKKTEFLVKKMNW 340

Query: 125 DPGTVISNPRLFMYSVDKRLRPRYKVLELLKLKNLLKNK--KIAPLLVRGESEFVENYVL 164
               V+SNP +F YS++KR+ PR  V++ L  K L++N+   I+ +L+  +  F+  YV 
Sbjct: 341 PLKAVVSNPAVFGYSLEKRIVPRGNVIKALMSKGLMRNELPSISCVLMCTKQVFLNRYVA 400

[Close]

BLAST of CsaV3_5G006880 vs. TAIR 10
Match: AT1G61970.2 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 80.1 bits (196), Expect = 1.9e-15
Identity = 55/198 (27.78%), Postives = 98/198 (49.49%), Query Frame = 0


Query: 5   DRMIQVVKTVKELGIEPKACMFVYALKVRSTMSESTWKKKIDVLKSLGWSENEIFTLFKR 64
           ++  + +K V E+G +P    FV AL+V   M+E T ++K+ + KSLG+   ++++ FK+
Sbjct: 221 EKFEETLKKVVEMGFDPTTSKFVEALQVIYKMNEKTIEEKVHLYKSLGFDVGDVWSSFKK 280

Query: 65  QPMSLARSE-----------------------------------EALRDVADFCFNTIKL 124
            P+SL  SE                                   E ++   +F    +  
Sbjct: 281 WPISLRVSEKKMLDSIETFLGLGFSRDEFAKMVKHFPPCIGLSTETVKKKTEFLVKKMNW 340

Query: 125 DPGTVISNPRLFMYSVDKRLRPRYKVLELLKLKNLLKNK--KIAPLLVRGESEFVENYVL 164
               V+SNP +F YS++KR+ PR  V++ L  K L++N+   I+ +L+  +  F+  YV 
Sbjct: 341 PLKAVVSNPAVFGYSLEKRIVPRGNVIKALMSKGLMRNELPSISCVLMCTKQVFLNRYVA 400

[Close]

BLAST of CsaV3_5G006880 vs. TAIR 10
Match: AT1G61990.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-14
Identity = 52/195 (26.67%), Postives = 100/195 (51.28%), Query Frame = 0


Query: 11  VKTVKELGIEPKACMFVYALKVRSTMSESTWKKKIDVLKSLGWSENEIFTLFKRQP---- 70
           +K V E+G +P    FV AL++   MSE T ++K+ V +SLG++ ++++ +FK+ P    
Sbjct: 220 LKKVVEMGFDPTTTKFVLALRMLYQMSEKTIEEKVVVFRSLGFTVDDVWEIFKKTPSVLK 279

Query: 71  ---------------MSLARSE----------------EALRDVADFCFNTIKLDPGTVI 130
                          +  +R+E                E+++   +F    +K     ++
Sbjct: 280 VSKKKILKSAETFLDLGYSRAEFLMMVKRYPPCIEYSVESVKKKNEFLVKKMKWPRNALV 339

Query: 131 SNPRLFMYSVDKRLRPRYKVLELLKLKNLLKN----KKIAPLLVRGESEFVENYVLKHLD 166
            +P++F YS++KR+ PR  +LE L  K LL+       ++ +L   +  F++ YV+KH +
Sbjct: 340 LHPQVFGYSMEKRIIPRCNILEALLSKGLLRKGSELPAVSSVLSCTDEGFLDRYVMKHNE 399

[Close]

BLAST of CsaV3_5G006880 vs. TAIR 10
Match: AT1G62010.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 74.7 bits (182), Expect = 8.1e-14
Identity = 54/192 (28.12%), Postives = 93/192 (48.44%), Query Frame = 0


Query: 11  VKTVKELGIEPKACMFVYALKVRSTMSESTWKKKIDVLKSLGWSENEIFTLFKRQPMSLA 70
           +K V E+G +P    FV+AL +   MS+ T ++KI V +S+G+S ++++ +FK+ P SL 
Sbjct: 211 LKKVVEMGFDPTTSTFVHALHMLYQMSDKTIEEKIRVYRSVGFSVDDVWAMFKKWPRSLT 270

Query: 71  RSE-----------------------------------EALRDVADFCFNTIKLDPGTVI 130
            SE                                   EA++   +F    +      V 
Sbjct: 271 HSEKKVANSIETFLGLGFSRDVFMMMFKRFPPCIGYSTEAVKKKTEFLVKEMNWPVKAVA 330

Query: 131 SNPRLFMYSVDKRLRPRYKVLELLKLKNLLKNK--KIAPLLVRGESEFVENYVLKHLDE- 164
           S P++  YS++KR  PR  V+++L  K LL+++   ++ +L      F+  YV KH D+ 
Sbjct: 331 SIPQVLGYSLEKRTVPRCNVIKVLMSKGLLESELPPMSSVLTSTSESFLNLYVSKHDDKQ 390

The following BLAST results are available for this feature:

BLAST of CsaV3_5G006880 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647981.1	7.2e-89	100.00	hypothetical protein Csa_000499 [Cucumis sativus]	[more]
XP_031741246.1	7.2e-89	100.00	transcription termination factor MTERF5, chloroplastic-like [Cucumis sativus]	[more]
XP_038892570.1	1.1e-65	75.58	transcription termination factor MTERF9, chloroplastic-like [Benincasa hispida]	[more]
XP_011654901.1	3.2e-65	77.91	uncharacterized protein LOC101206293 [Cucumis sativus] >KAE8647959.1 hypothetica...	[more]
KAA0034116.1	1.4e-63	75.00	transcription termination factor MTERF2 [Cucumis melo var. makuwa]	[more]

BLAST of CsaV3_5G006880 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G006880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CXX8	6.6e-64	75.00	Transcription termination factor MTERF2 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7SW09	6.6e-64	75.00	Transcription termination factor MTERF2 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3BDE1	6.6e-64	75.00	transcription termination factor MTERF2, chloroplastic-like OS=Cucumis melo OX=3...	[more]
A0A5D3CWA2	7.3e-63	72.67	Transcription termination factor MTERF5 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3BEQ3	7.3e-63	72.67	uncharacterized protein LOC103488865 OS=Cucumis melo OX=3656 GN=LOC103488865 PE=...	[more]

BLAST of CsaV3_5G006880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21150.1	2.1e-17	30.00	Mitochondrial transcription termination factor family protein	[more]
AT1G61970.1	1.9e-15	27.78	Mitochondrial transcription termination factor family protein	[more]
AT1G61970.2	1.9e-15	27.78	Mitochondrial transcription termination factor family protein	[more]
AT1G61990.1	1.2e-14	26.67	Mitochondrial transcription termination factor family protein	[more]
AT1G62010.1	8.1e-14	28.13	Mitochondrial transcription termination factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 24..54 e-value: 210.0 score: 9.2 coord: 59..90 e-value: 3000.0 score: 0.1 coord: 91..122 e-value: 0.02 score: 24.0
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 35..141 e-value: 1.4E-16 score: 60.3
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 2..164
IPR038538	MTERF superfamily, mitochondrial/chloroplastic	GENE3D	1.25.70.10	Transcription termination factor 3, mitochondrial	coord: 1..155 e-value: 2.7E-28 score: 100.9
None	No IPR available	PANTHER	PTHR13068:SF31	TRANSCRIPTION TERMINATION FACTOR MTERF15, MITOCHONDRIAL-LIKE	coord: 2..164

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G006880.1	CsaV3_5G006880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003690	double-stranded DNA binding