CsaV3_5G006530 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G006530
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	U4/U6 small nuclear ribonucleoprotein Prp3
Location	chr5: 4350087 .. 4356960 (-)
RNA-Seq Expression	CsaV3_5G006530
Synteny	CsaV3_5G006530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGGACGAACTCTCTCACTCGTCAGGAGAGTAGATAGAGCGAAACCCTAGAGAGAGAGGAAGACGAAGAAGAAGGAGAAGAAGAAGAGGAAGAAATTCAAGTTCAGAGCCTTTGGAGCCCTGGAAATGGATAGGGTTTCCGAGAAGGAGAAATCAAGCAAGCGTTCTAGAGAAGAACGCGATCGAGACCACAAGCATCGAAGTCGGGATACCGAGGATAAGCATTTATCCAAGGATGAAAAGCATCGTGAATCCGATCGCCACCATCGCCGGCGACACCATCGATCGGACCGTGATTCGAAGCGTGAGCGTTCGCATGAGCCTCGTGAACACAAACATCGGCGTGATATGTCTCCTGATGAGCGTGAAAGCTCCCAAGACCGCGATTTTAAGCGGGAAAGGTCTTATGAACTTAGGGAGGAGAGAGAAAGAAGTAGGGATAGGGATTCGTCTAAGCGAGAGAAGTCGAATGAACCGAGAGGATTGAGAGAAGGCAGCGAAGAGCGTGGCAAGCTGCGTGAGGTGAGGCGCGAGGAATCAGACAATGAGCATGAACGGGAAGGGTCGTTCGAGCCTATTCAAAATTCCGTACGTCCAAACAAGAGGAAGGAGAGGGGAGGAAGTGAGGATAGATTTGATGGTGGGGAGAAGAGGGCCAGGGCTTCGGAAGTTGGGAATGAAGTGAATGGAGCTGAGATGGATGAGAAAAAGGAGCGGAGGAGATTTGCTGACGGTGAGAAAGACGAAGGAGCAAACTTGAGTGGTCGGGGAAGGAGGGACAGGAAGCGGTTTGAGGATCGAGGGAAGGAAGAAGATAATGGTGGAAATGTTGATGAGAAGCATGGGAAAGTGAATGAATACAAGTCCAAAGGAGACGTTGGGGATGGGAAAGTTCAGTTTGGAGGCACCACCGATGAAAAAAGGTCACTGGGGAATGTAAGTTTACATTCCATTTTGCGTATGCTGTATTTTATCATAATGAATTACAGTACTAAAATTTCTTCATACATCATGGGCATCAGTTTGTAGAACCGACAATTGTTCGCTAGAGCCTGTTTGTCAACCATTTCGTTATAAACACTATTTCCCCCCTGTTAGTTTCTTTCTACGTTGGCTAAATTTTATGTGAACCAAGTTTTGAAAACTAAAAATTTGCTGTTTCTTAGAATTTGTCTGAGAATTCAAATGTTCTCTCGGGATGATGAAAACCTTGATTAAGAATTTTCTGAGCAAAATACAATCTCAAAAAACCAAATGGTTATCAAATGGGCTCTAGAAATCAAGTTCTGCCATATATCATTGTGTTTTACTATTGTACATTTCATTTGGCAATTCATCCTAGTATCACTTTGTTTTCAATCATCAATGGTTGGGAAAGCGTTTCTTGTTTACGAAAAATGGAACCAAGTACATTTTAGGAGACTTCCAGAGTTACTTTATCTCTTCGGAATTTCCTTGCTGACGAGTGACTTCACACTTCTTTTGCTACTTTCTGTTGTTTCTCCCCCTTAGGCTTAGGTCACTACTTGGGCTTGCCGCTTGTGCCCGCTCTAACATCCCTTATAATTAATGTCCTCGCTTGGCATTCCTTTCTTTCCTCCCTTTCTGACAATAACTAAGTCCTTATCTTCTTGAATTGACAGGAAATTTGCATGTATATATACATACATATAAATATATAATGTGATTGTGTTGGTCCATTAGGGTGTTCTCGTTTGTTTTTTGTTTCTTCAATAAAGGGGTTTCTCGTATAATATGTATATATACATATATATATGTGATCATCATTGTGTGACCTCTAGGCTTGAAATTTTATTTTTGGGAGGCAGTTTCATGTGAGGAAACTCATATCTCTATAAACATTATGAAGCCTAAGAATTGTCATTGCTAGGATGTGCACTATTTGTGGGATCTTGAATTTTTTAGTTGTGAACAAATTATGTTCACAGGTCTTGTTGTAATATGGTGCTGTTCGTAGATGGGTATAAGCTCAAGAATTTTATTTGATTATGTTATGCTAATTAAAGTCACCAAAATGGATTTTGTTAGTTTAAGCTTTATGGTGTGTTTCAAACAATTTATCTTCCAAGTCAGAACATTTATTCATTCTTTGGTATATTAAGCATCTTGGCAATTTTCTAGCCAGTAGCTTTGAAGTGGGAGTGAGTTTGAGTGTTGTTTGACATTTGTTGGATGTAAAGAGCTGACATATTTTGTAATTTTGTTAATTGTTTGGTTTATAATGCACACCCTCGTTCAAGGTTCCTTATAGTGATTCTTACCTTCTCTTCATCTTTTAATCTGTATACATGGGTTAATTCTATAATATTGAGGAAGGTCTTCCATGATTATGATGCCTTTGGGTAGTGCTAGACTGCTAGTAATGAACTTAATGAACTGAAGTCATAATCATGCAGGGATCTATGGTGGAACCTACCGATATGCCATCAGCAAGTGTGCCCCAGAATTTGTTACATCCTAGTCATTCCCTTCCTATCAAGGTATCTTCAATTTCTACCACAAATGAAAATAGGGGAGTTAGTATTACCAGATCTCATGAGGTTCATGGAAAATCTAGTACAGATGGGACATCCTCAACTGCTGGGAAAAGTGGAAATCTCTCTCTTGATGCTTTAGCAAAAGCTAAGAAAGCTTTACAGATGCAGAAAGAATTGGCGGAGAAGTTGAAGAGAATTCCCCTGGTAAGTTAGGCAACAGAGATACTTTGATCCATGCTAGCTAGTTTCCCGCACTTTGATGTTGGTTTTACATATACATGGATGCATATGCGCATGTGTGTATTCGGTTTTTCTTCTGTGTATCAAGTGTTACTATTTGATCTTATAGATGAAGAAGGTTGGGGGTTCAAGTTCTGCTAATAGCTCAGTTGTGAAATTGGAGGAGAAAGCTAAACCTCCCAGTGGTATATTGGGTCCACTGTCAACTACCAATGATGCTACAACTCTTTCAACTGGGGTAGTGTCTAGTTCGTCGACATTACCTTCTGCTGCCAATGCTCTTGATGGTGGTATTAATGTTCCGGCTGGCCTTACCTCTATACCCCATATTGAAGCTGTTAAGCGTGCTCAGGAGCTCGCTGCCAGGATGGGATTTCGCCAGGATCCAGAGTTTGCTCCTCTTATAAATTTGTTTCCAGGGAATGTAGCAACTGACGTTGCTGTTCCACAGAAACCAACCAAGGCCCCTGTTCTTCGTCTTGATGCACTTGGTAGGGAAATTGACGAACAAGGAAATGTAGTCAATATAACCAAACCCAGCAACCTTAGCACTCTTAAGGTTTGGAATGAACTTACATCTCTTTCGGAGGTTTTTTTCTTCTTTTATTAGCATTGAATTTTGAATAGATTGACCTTGTATACATTTCTAACTTCGCAGGTTAACATCAACAAACAAAAAAAGGATGCATTTCAGATTCTTAAACCTGAACTTGATGTGGATCCAGATTCAAACCCTCATTTTGATGAGAGAATGGGTATAAATAAAACTAAACTGCTGAGGCCAAAGAGAATGAGTTTCCAGTTCGTTGAGGAAGGGAAATGGTCGAAGGAGGCTGAAACCTTAAAATTGAGGGTACTTATAGTTTCTTTCATAGTTGTCTTTGGTGAAAGAATGCTTGCATACTTATTTGTTAAATAAAATTCTTATATTTCTGCTATAGAGTAAATTTGGAGAGGCACAAGCGAAAGAACGAAGAGAAAAGCAGGCACAGTTGGCCAAGGCAAAGGCTGCACCTGATATAAATCCAAATTTGATCGAGGTTTCAGAGAGAGTGGTGAAGGAAAAAACAAAAGACCCAATTCCTGAAATTGAGTGGTGGTAAGCTGATATTTTCTATTATGGTATTTCTTGAACTGTCTTATTTTACTTTTTATGTAAAAATTTGTAAGCTAAGAGTTGAGCAGACTGTATCTTTTCCCGTTCTCCTCTTGCAGTTATTTTAATTTTCTAGCATTTTGTTAATGTCTAGCTTTTAATGGGATGGCTTTGGATATTCAATTCTAATATATAATTTTTAAAAAAAATATCTAGGGATGTCCCGCTTTTGCAATCCGGTGCGTACAAGGATTTGGGAGATGGTTTTGTGGCCGATGACAAATTGAGAAAGGACAAGATTACCATATACGTGGAGCATCCTCGTCCTATTGAACCTCCTGCCGAGCCAGCTCTCCCCCCTCCTCAACCCCTAAAGCTAACAAAGAAGGAGCAGAAGAAACTCCGTACACAGCGTCGTCTAGCAAAGGAGAAAGATAGACAGGAAATGATTAGACAAGGCCTGATAGAACCACCTAAACCGAAAGTTAAAATGAGCAATTTAATGAAAGTTCTTGGCTCAGAAGCAACCCAAGATCCTACTAAACTTGAGAAAGAGATTCGTGCTGCAGCTGCTGAGAGGGAGCAAGCTCACATAGATCGAAATATTGCACGAAAACTCACCCCTGCAGAGCGCCGTGAGAAGAAAGAACGTAAACTATTTGACGATTCAAATTCACTCGAGACATTTGTGTCTGTTTACAAGATCAACGATCTATCACACCCCCAGGCCCGGTTTAAAGTTGACGTTAATGCTAGAGAGAACCGATTGACAGGGTGTGCTGTGATATGCGATGGCATCAGTGTTCTGGTCGTTGAAGGGGGTAGCAAGTCCATCAAGAGGTACGCAAAACTTATGCTCAGGCGTATAAATTGGGCTGCTTCTGTGAAAGAGGAGGAAGAGGAGGAAAATGACGATAAACCCCTTAACAAATGTTCCTTGGTATGGCAAGGAAGTGTTGCCAAATCTAGCTTCAATAGATTTTCCATCCAGGAGTGCATGACTGAGGCAGCTGCTAGGAAGATTTTCGCTGATGCCGGTGTCGGTCATTACTGGGATTTTGCTATTAACTTCTCCGACGATCAATTATAATTCAACTTCTGCACTGTTAGTTGATGCGAATTGCTGATGATTTACTTCAGGTCAAGAAGCAAGAAATGCAGAAATGTTAAAAGCCTATATATCATCACGGTATTGCCGGTCTTACTTGTTTCTATTAATTGGTTAGGTGGGAAGATTTCATTATGTTCCAGCTCACTTTTTCCACAAGTTCCTGGGAATTTTTCGGATTTCATGAGTTGCAACCAACATCATCTGTATGGGAAATATGTTTGTAGTAGTTGGTGATCAGTTGGTATCGCCCAAGACCACCATCTTCAAGAAACGGGTATTGTGTCCAATATTCGTCTTATAGTCTTCATTTCCTTGTAGTTTTATAGAATCTAGAGTTGTGTTTCTTTCTCTTTTCTCCACCCTTCATAAGTGAGGAATGTTTGACAAATCCACTCGGTTGGGTAGTTAAATGAAGGAAGGTGGCTTTAAATAACTTTCTACTCAAACAAAGAGGTACCCTTTTTACTAATTAATTTCCGCACGGTTATTGTGAAAACTCTATACTGGTTCTTCCTTGTTTTATCTTCTTGTTTCTTCTCAATTGTAGGTTCATAGGAGATTTGAACCCATGGCGAAAAAGCTCTGACCAATTGAATTTCATCGGTTGAGTTTGTGATTAAGGGTGAGTGAGTTTGATAATATCCATTCCCACAAATGTCTTTTCATTTTAGTAAAATTTTACACCATTTCCTGGATTTTCAAATGATTATAGTAATAAACACATTCTAGTTGAAGGTGTTTTGTAGTATATCTTTTTCGAGGTTTGGTTCTATAATGCTTTTGAAGTTGTGTGTCGAATCAATACAACTTTTAAAATGCTCCCTC

mRNA sequence

ATGGATAGGGTTTCCGAGAAGGAGAAATCAAGCAAGCGTTCTAGAGAAGAACGCGATCGAGACCACAAGCATCGAAGTCGGGATACCGAGGATAAGCATTTATCCAAGGATGAAAAGCATCGTGAATCCGATCGCCACCATCGCCGGCGACACCATCGATCGGACCGTGATTCGAAGCGTGAGCGTTCGCATGAGCCTCGTGAACACAAACATCGGCGTGATATGTCTCCTGATGAGCGTGAAAGCTCCCAAGACCGCGATTTTAAGCGGGAAAGGTCTTATGAACTTAGGGAGGAGAGAGAAAGAAGTAGGGATAGGGATTCGTCTAAGCGAGAGAAGTCGAATGAACCGAGAGGATTGAGAGAAGGCAGCGAAGAGCGTGGCAAGCTGCGTGAGGTGAGGCGCGAGGAATCAGACAATGAGCATGAACGGGAAGGGTCGTTCGAGCCTATTCAAAATTCCGTACGTCCAAACAAGAGGAAGGAGAGGGGAGGAAGTGAGGATAGATTTGATGGTGGGGAGAAGAGGGCCAGGGCTTCGGAAGTTGGGAATGAAGTGAATGGAGCTGAGATGGATGAGAAAAAGGAGCGGAGGAGATTTGCTGACGGTGAGAAAGACGAAGGAGCAAACTTGAGTGGTCGGGGAAGGAGGGACAGGAAGCGGTTTGAGGATCGAGGGAAGGAAGAAGATAATGGTGGAAATGTTGATGAGAAGCATGGGAAAGTGAATGAATACAAGTCCAAAGGAGACGTTGGGGATGGGAAAGTTCAGTTTGGAGGCACCACCGATGAAAAAAGGTCACTGGGGAATGGATCTATGGTGGAACCTACCGATATGCCATCAGCAAGTGTGCCCCAGAATTTGTTACATCCTAGTCATTCCCTTCCTATCAAGGTATCTTCAATTTCTACCACAAATGAAAATAGGGGAGTTAGTATTACCAGATCTCATGAGGTTCATGGAAAATCTAGTACAGATGGGACATCCTCAACTGCTGGGAAAAGTGGAAATCTCTCTCTTGATGCTTTAGCAAAAGCTAAGAAAGCTTTACAGATGCAGAAAGAATTGGCGGAGAAGTTGAAGAGAATTCCCCTGATGAAGAAGGTTGGGGGTTCAAGTTCTGCTAATAGCTCAGTTGTGAAATTGGAGGAGAAAGCTAAACCTCCCAGTGGTATATTGGGTCCACTGTCAACTACCAATGATGCTACAACTCTTTCAACTGGGGTAGTGTCTAGTTCGTCGACATTACCTTCTGCTGCCAATGCTCTTGATGGTGGTATTAATGTTCCGGCTGGCCTTACCTCTATACCCCATATTGAAGCTGTTAAGCGTGCTCAGGAGCTCGCTGCCAGGATGGGATTTCGCCAGGATCCAGAGTTTGCTCCTCTTATAAATTTGTTTCCAGGGAATGTAGCAACTGACGTTGCTGTTCCACAGAAACCAACCAAGGCCCCTGTTCTTCGTCTTGATGCACTTGGTAGGGAAATTGACGAACAAGGAAATGTAGTCAATATAACCAAACCCAGCAACCTTAGCACTCTTAAGGTTAACATCAACAAACAAAAAAAGGATGCATTTCAGATTCTTAAACCTGAACTTGATGTGGATCCAGATTCAAACCCTCATTTTGATGAGAGAATGGGTATAAATAAAACTAAACTGCTGAGGCCAAAGAGAATGAGTTTCCAGTTCGTTGAGGAAGGGAAATGGTCGAAGGAGGCTGAAACCTTAAAATTGAGGAGTAAATTTGGAGAGGCACAAGCGAAAGAACGAAGAGAAAAGCAGGCACAGTTGGCCAAGGCAAAGGCTGCACCTGATATAAATCCAAATTTGATCGAGGTTTCAGAGAGAGTGGTGAAGGAAAAAACAAAAGACCCAATTCCTGAAATTGAGTGGTGGGATGTCCCGCTTTTGCAATCCGGTGCGTACAAGGATTTGGGAGATGGTTTTGTGGCCGATGACAAATTGAGAAAGGACAAGATTACCATATACGTGGAGCATCCTCGTCCTATTGAACCTCCTGCCGAGCCAGCTCTCCCCCCTCCTCAACCCCTAAAGCTAACAAAGAAGGAGCAGAAGAAACTCCGTACACAGCGTCGTCTAGCAAAGGAGAAAGATAGACAGGAAATGATTAGACAAGGCCTGATAGAACCACCTAAACCGAAAGTTAAAATGAGCAATTTAATGAAAGTTCTTGGCTCAGAAGCAACCCAAGATCCTACTAAACTTGAGAAAGAGATTCGTGCTGCAGCTGCTGAGAGGGAGCAAGCTCACATAGATCGAAATATTGCACGAAAACTCACCCCTGCAGAGCGCCGTGAGAAGAAAGAACGTAAACTATTTGACGATTCAAATTCACTCGAGACATTTGTGTCTGTTTACAAGATCAACGATCTATCACACCCCCAGGCCCGGTTTAAAGTTGACGTTAATGCTAGAGAGAACCGATTGACAGGGTGTGCTGTGATATGCGATGGCATCAGTGTTCTGGTCGTTGAAGGGGGTAGCAAGTCCATCAAGAGGTACGCAAAACTTATGCTCAGGCGTATAAATTGGGCTGCTTCTGTGAAAGAGGAGGAAGAGGAGGAAAATGACGATAAACCCCTTAACAAATGTTCCTTGGTATGGCAAGGAAGTGTTGCCAAATCTAGCTTCAATAGATTTTCCATCCAGGAGTGCATGACTGAGGCAGCTGCTAGGAAGATTTTCGCTGATGCCGGTGTCGGTCATTACTGGGATTTTGCTATTAACTTCTCCGACGATCAATTATAA

Coding sequence (CDS)

ATGGATAGGGTTTCCGAGAAGGAGAAATCAAGCAAGCGTTCTAGAGAAGAACGCGATCGAGACCACAAGCATCGAAGTCGGGATACCGAGGATAAGCATTTATCCAAGGATGAAAAGCATCGTGAATCCGATCGCCACCATCGCCGGCGACACCATCGATCGGACCGTGATTCGAAGCGTGAGCGTTCGCATGAGCCTCGTGAACACAAACATCGGCGTGATATGTCTCCTGATGAGCGTGAAAGCTCCCAAGACCGCGATTTTAAGCGGGAAAGGTCTTATGAACTTAGGGAGGAGAGAGAAAGAAGTAGGGATAGGGATTCGTCTAAGCGAGAGAAGTCGAATGAACCGAGAGGATTGAGAGAAGGCAGCGAAGAGCGTGGCAAGCTGCGTGAGGTGAGGCGCGAGGAATCAGACAATGAGCATGAACGGGAAGGGTCGTTCGAGCCTATTCAAAATTCCGTACGTCCAAACAAGAGGAAGGAGAGGGGAGGAAGTGAGGATAGATTTGATGGTGGGGAGAAGAGGGCCAGGGCTTCGGAAGTTGGGAATGAAGTGAATGGAGCTGAGATGGATGAGAAAAAGGAGCGGAGGAGATTTGCTGACGGTGAGAAAGACGAAGGAGCAAACTTGAGTGGTCGGGGAAGGAGGGACAGGAAGCGGTTTGAGGATCGAGGGAAGGAAGAAGATAATGGTGGAAATGTTGATGAGAAGCATGGGAAAGTGAATGAATACAAGTCCAAAGGAGACGTTGGGGATGGGAAAGTTCAGTTTGGAGGCACCACCGATGAAAAAAGGTCACTGGGGAATGGATCTATGGTGGAACCTACCGATATGCCATCAGCAAGTGTGCCCCAGAATTTGTTACATCCTAGTCATTCCCTTCCTATCAAGGTATCTTCAATTTCTACCACAAATGAAAATAGGGGAGTTAGTATTACCAGATCTCATGAGGTTCATGGAAAATCTAGTACAGATGGGACATCCTCAACTGCTGGGAAAAGTGGAAATCTCTCTCTTGATGCTTTAGCAAAAGCTAAGAAAGCTTTACAGATGCAGAAAGAATTGGCGGAGAAGTTGAAGAGAATTCCCCTGATGAAGAAGGTTGGGGGTTCAAGTTCTGCTAATAGCTCAGTTGTGAAATTGGAGGAGAAAGCTAAACCTCCCAGTGGTATATTGGGTCCACTGTCAACTACCAATGATGCTACAACTCTTTCAACTGGGGTAGTGTCTAGTTCGTCGACATTACCTTCTGCTGCCAATGCTCTTGATGGTGGTATTAATGTTCCGGCTGGCCTTACCTCTATACCCCATATTGAAGCTGTTAAGCGTGCTCAGGAGCTCGCTGCCAGGATGGGATTTCGCCAGGATCCAGAGTTTGCTCCTCTTATAAATTTGTTTCCAGGGAATGTAGCAACTGACGTTGCTGTTCCACAGAAACCAACCAAGGCCCCTGTTCTTCGTCTTGATGCACTTGGTAGGGAAATTGACGAACAAGGAAATGTAGTCAATATAACCAAACCCAGCAACCTTAGCACTCTTAAGGTTAACATCAACAAACAAAAAAAGGATGCATTTCAGATTCTTAAACCTGAACTTGATGTGGATCCAGATTCAAACCCTCATTTTGATGAGAGAATGGGTATAAATAAAACTAAACTGCTGAGGCCAAAGAGAATGAGTTTCCAGTTCGTTGAGGAAGGGAAATGGTCGAAGGAGGCTGAAACCTTAAAATTGAGGAGTAAATTTGGAGAGGCACAAGCGAAAGAACGAAGAGAAAAGCAGGCACAGTTGGCCAAGGCAAAGGCTGCACCTGATATAAATCCAAATTTGATCGAGGTTTCAGAGAGAGTGGTGAAGGAAAAAACAAAAGACCCAATTCCTGAAATTGAGTGGTGGGATGTCCCGCTTTTGCAATCCGGTGCGTACAAGGATTTGGGAGATGGTTTTGTGGCCGATGACAAATTGAGAAAGGACAAGATTACCATATACGTGGAGCATCCTCGTCCTATTGAACCTCCTGCCGAGCCAGCTCTCCCCCCTCCTCAACCCCTAAAGCTAACAAAGAAGGAGCAGAAGAAACTCCGTACACAGCGTCGTCTAGCAAAGGAGAAAGATAGACAGGAAATGATTAGACAAGGCCTGATAGAACCACCTAAACCGAAAGTTAAAATGAGCAATTTAATGAAAGTTCTTGGCTCAGAAGCAACCCAAGATCCTACTAAACTTGAGAAAGAGATTCGTGCTGCAGCTGCTGAGAGGGAGCAAGCTCACATAGATCGAAATATTGCACGAAAACTCACCCCTGCAGAGCGCCGTGAGAAGAAAGAACGTAAACTATTTGACGATTCAAATTCACTCGAGACATTTGTGTCTGTTTACAAGATCAACGATCTATCACACCCCCAGGCCCGGTTTAAAGTTGACGTTAATGCTAGAGAGAACCGATTGACAGGGTGTGCTGTGATATGCGATGGCATCAGTGTTCTGGTCGTTGAAGGGGGTAGCAAGTCCATCAAGAGGTACGCAAAACTTATGCTCAGGCGTATAAATTGGGCTGCTTCTGTGAAAGAGGAGGAAGAGGAGGAAAATGACGATAAACCCCTTAACAAATGTTCCTTGGTATGGCAAGGAAGTGTTGCCAAATCTAGCTTCAATAGATTTTCCATCCAGGAGTGCATGACTGAGGCAGCTGCTAGGAAGATTTTCGCTGATGCCGGTGTCGGTCATTACTGGGATTTTGCTATTAACTTCTCCGACGATCAATTATAA

Protein sequence

MDRVSEKEKSSKRSREERDRDHKHRSRDTEDKHLSKDEKHRESDRHHRRRHHRSDRDSKRERSHEPREHKHRRDMSPDERESSQDRDFKRERSYELREERERSRDRDSSKREKSNEPRGLREGSEERGKLREVRREESDNEHEREGSFEPIQNSVRPNKRKERGGSEDRFDGGEKRARASEVGNEVNGAEMDEKKERRRFADGEKDEGANLSGRGRRDRKRFEDRGKEEDNGGNVDEKHGKVNEYKSKGDVGDGKVQFGGTTDEKRSLGNGSMVEPTDMPSASVPQNLLHPSHSLPIKVSSISTTNENRGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQMQKELAEKLKRIPLMKKVGGSSSANSSVVKLEEKAKPPSGILGPLSTTNDATTLSTGVVSSSSTLPSAANALDGGINVPAGLTSIPHIEAVKRAQELAARMGFRQDPEFAPLINLFPGNVATDVAVPQKPTKAPVLRLDALGREIDEQGNVVNITKPSNLSTLKVNINKQKKDAFQILKPELDVDPDSNPHFDERMGINKTKLLRPKRMSFQFVEEGKWSKEAETLKLRSKFGEAQAKERREKQAQLAKAKAAPDINPNLIEVSERVVKEKTKDPIPEIEWWDVPLLQSGAYKDLGDGFVADDKLRKDKITIYVEHPRPIEPPAEPALPPPQPLKLTKKEQKKLRTQRRLAKEKDRQEMIRQGLIEPPKPKVKMSNLMKVLGSEATQDPTKLEKEIRAAAAEREQAHIDRNIARKLTPAERREKKERKLFDDSNSLETFVSVYKINDLSHPQARFKVDVNARENRLTGCAVICDGISVLVVEGGSKSIKRYAKLMLRRINWAASVKEEEEEENDDKPLNKCSLVWQGSVAKSSFNRFSIQECMTEAAARKIFADAGVGHYWDFAINFSDDQL*

Homology

[Close]

BLAST of CsaV3_5G006530 vs. NCBI nr
Match: XP_004143591.1 (protein RDM16 isoform X1 [Cucumis sativus] >KGN50493.1 hypothetical protein Csa_000308 [Cucumis sativus])

HSP 1 Score: 1709.5 bits (4426), Expect = 0.0e+00
Identity = 923/923 (100.00%), Postives = 923/923 (100.00%), Query Frame = 0


Query: 1   MDRVSEKEKSSKRSREERDRDHKHRSRDTEDKHLSKDEKHRESDRHHRRRHHRSDRDSKR 60
           MDRVSEKEKSSKRSREERDRDHKHRSRDTEDKHLSKDEKHRESDRHHRRRHHRSDRDSKR
Sbjct: 1   MDRVSEKEKSSKRSREERDRDHKHRSRDTEDKHLSKDEKHRESDRHHRRRHHRSDRDSKR 60

Query: 61  ERSHEPREHKHRRDMSPDERESSQDRDFKRERSYELREERERSRDRDSSKREKSNEPRGL 120
           ERSHEPREHKHRRDMSPDERESSQDRDFKRERSYELREERERSRDRDSSKREKSNEPRGL
Sbjct: 61  ERSHEPREHKHRRDMSPDERESSQDRDFKRERSYELREERERSRDRDSSKREKSNEPRGL 120

Query: 121 REGSEERGKLREVRREESDNEHEREGSFEPIQNSVRPNKRKERGGSEDRFDGGEKRARAS 180
           REGSEERGKLREVRREESDNEHEREGSFEPIQNSVRPNKRKERGGSEDRFDGGEKRARAS
Sbjct: 121 REGSEERGKLREVRREESDNEHEREGSFEPIQNSVRPNKRKERGGSEDRFDGGEKRARAS 180

Query: 181 EVGNEVNGAEMDEKKERRRFADGEKDEGANLSGRGRRDRKRFEDRGKEEDNGGNVDEKHG 240
           EVGNEVNGAEMDEKKERRRFADGEKDEGANLSGRGRRDRKRFEDRGKEEDNGGNVDEKHG
Sbjct: 181 EVGNEVNGAEMDEKKERRRFADGEKDEGANLSGRGRRDRKRFEDRGKEEDNGGNVDEKHG 240

Query: 241 KVNEYKSKGDVGDGKVQFGGTTDEKRSLGNGSMVEPTDMPSASVPQNLLHPSHSLPIKVS 300
           KVNEYKSKGDVGDGKVQFGGTTDEKRSLGNGSMVEPTDMPSASVPQNLLHPSHSLPIKVS
Sbjct: 241 KVNEYKSKGDVGDGKVQFGGTTDEKRSLGNGSMVEPTDMPSASVPQNLLHPSHSLPIKVS 300

Query: 301 SISTTNENRGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQMQKELAEKL 360
           SISTTNENRGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQMQKELAEKL
Sbjct: 301 SISTTNENRGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQMQKELAEKL 360

Query: 361 KRIPLMKKVGGSSSANSSVVKLEEKAKPPSGILGPLSTTNDATTLSTGVVSSSSTLPSAA 420
           KRIPLMKKVGGSSSANSSVVKLEEKAKPPSGILGPLSTTNDATTLSTGVVSSSSTLPSAA
Sbjct: 361 KRIPLMKKVGGSSSANSSVVKLEEKAKPPSGILGPLSTTNDATTLSTGVVSSSSTLPSAA 420

Query: 421 NALDGGINVPAGLTSIPHIEAVKRAQELAARMGFRQDPEFAPLINLFPGNVATDVAVPQK 480
           NALDGGINVPAGLTSIPHIEAVKRAQELAARMGFRQDPEFAPLINLFPGNVATDVAVPQK
Sbjct: 421 NALDGGINVPAGLTSIPHIEAVKRAQELAARMGFRQDPEFAPLINLFPGNVATDVAVPQK 480

Query: 481 PTKAPVLRLDALGREIDEQGNVVNITKPSNLSTLKVNINKQKKDAFQILKPELDVDPDSN 540
           PTKAPVLRLDALGREIDEQGNVVNITKPSNLSTLKVNINKQKKDAFQILKPELDVDPDSN
Sbjct: 481 PTKAPVLRLDALGREIDEQGNVVNITKPSNLSTLKVNINKQKKDAFQILKPELDVDPDSN 540

Query: 541 PHFDERMGINKTKLLRPKRMSFQFVEEGKWSKEAETLKLRSKFGEAQAKERREKQAQLAK 600
           PHFDERMGINKTKLLRPKRMSFQFVEEGKWSKEAETLKLRSKFGEAQAKERREKQAQLAK
Sbjct: 541 PHFDERMGINKTKLLRPKRMSFQFVEEGKWSKEAETLKLRSKFGEAQAKERREKQAQLAK 600

Query: 601 AKAAPDINPNLIEVSERVVKEKTKDPIPEIEWWDVPLLQSGAYKDLGDGFVADDKLRKDK 660
           AKAAPDINPNLIEVSERVVKEKTKDPIPEIEWWDVPLLQSGAYKDLGDGFVADDKLRKDK
Sbjct: 601 AKAAPDINPNLIEVSERVVKEKTKDPIPEIEWWDVPLLQSGAYKDLGDGFVADDKLRKDK 660

Query: 661 ITIYVEHPRPIEPPAEPALPPPQPLKLTKKEQKKLRTQRRLAKEKDRQEMIRQGLIEPPK 720
           ITIYVEHPRPIEPPAEPALPPPQPLKLTKKEQKKLRTQRRLAKEKDRQEMIRQGLIEPPK
Sbjct: 661 ITIYVEHPRPIEPPAEPALPPPQPLKLTKKEQKKLRTQRRLAKEKDRQEMIRQGLIEPPK 720

Query: 721 PKVKMSNLMKVLGSEATQDPTKLEKEIRAAAAEREQAHIDRNIARKLTPAERREKKERKL 780
           PKVKMSNLMKVLGSEATQDPTKLEKEIRAAAAEREQAHIDRNIARKLTPAERREKKERKL
Sbjct: 721 PKVKMSNLMKVLGSEATQDPTKLEKEIRAAAAEREQAHIDRNIARKLTPAERREKKERKL 780

Query: 781 FDDSNSLETFVSVYKINDLSHPQARFKVDVNARENRLTGCAVICDGISVLVVEGGSKSIK 840
           FDDSNSLETFVSVYKINDLSHPQARFKVDVNARENRLTGCAVICDGISVLVVEGGSKSIK
Sbjct: 781 FDDSNSLETFVSVYKINDLSHPQARFKVDVNARENRLTGCAVICDGISVLVVEGGSKSIK 840

Query: 841 RYAKLMLRRINWAASVKEEEEEENDDKPLNKCSLVWQGSVAKSSFNRFSIQECMTEAAAR 900
           RYAKLMLRRINWAASVKEEEEEENDDKPLNKCSLVWQGSVAKSSFNRFSIQECMTEAAAR
Sbjct: 841 RYAKLMLRRINWAASVKEEEEEENDDKPLNKCSLVWQGSVAKSSFNRFSIQECMTEAAAR 900

Query: 901 KIFADAGVGHYWDFAINFSDDQL 924
           KIFADAGVGHYWDFAINFSDDQL
Sbjct: 901 KIFADAGVGHYWDFAINFSDDQL 923

[Close]

BLAST of CsaV3_5G006530 vs. NCBI nr
Match: XP_008461606.1 (PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo] >KAA0034019.1 U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa])

HSP 1 Score: 1652.9 bits (4279), Expect = 0.0e+00
Identity = 894/923 (96.86%), Postives = 906/923 (98.16%), Query Frame = 0


Query: 1   MDRVSEKEKSSKRSREERDRDHKHRSRDTEDKHLSKDEKHRESDRHHRRRHHRSDRDSKR 60
           MDRVSEKEKSSKRSREERDRDHKHRSRDTEDKHLSKDEKHRESDRHHRRRHHRSDRDSKR
Sbjct: 1   MDRVSEKEKSSKRSREERDRDHKHRSRDTEDKHLSKDEKHRESDRHHRRRHHRSDRDSKR 60

Query: 61  ERSHEPREHKHRRDMSPDERESSQDRDFKRERSYELREERERSRDRDSSKREKSNEPRGL 120
           ERSHEPREHKHRRD SPDERE SQDRDFKRERSYELREERERSRDRDSSKREKSNEPRGL
Sbjct: 61  ERSHEPREHKHRRDRSPDEREGSQDRDFKRERSYELREERERSRDRDSSKREKSNEPRGL 120

Query: 121 REGSEERGKLREVRREESDNEHEREGSFEPIQNSVRPNKRKERGGSEDRFDGGEKRARAS 180
           REGSEERGKLREVRREESDNE EREGSFEPIQNSVR NKRKERGGSEDRFDGGEKRARAS
Sbjct: 121 REGSEERGKLREVRREESDNEREREGSFEPIQNSVRSNKRKERGGSEDRFDGGEKRARAS 180

Query: 181 EVGNEVNGAEMDEKKERRRFADGEKDEGANLSGRGRRDRKRFEDRGKEEDNGGNVDEKHG 240
           EVGNEVNGAEMDEKKERRRFADGEKD+GANLSGR RRDRKRFEDR KEEDNGGNVDEKH 
Sbjct: 181 EVGNEVNGAEMDEKKERRRFADGEKDDGANLSGRARRDRKRFEDRVKEEDNGGNVDEKHA 240

Query: 241 KVNEYKSKGDVGDGKVQFGGTTDEKRSLGNGSMVEPTDMPSASVPQNLLHPSHSLPIKVS 300
           KV EYKSKGDVGDGKVQFGGTTDEKRSLGNGSMVEPTD+PSASVPQNLLHPS SLPIKVS
Sbjct: 241 KVIEYKSKGDVGDGKVQFGGTTDEKRSLGNGSMVEPTDIPSASVPQNLLHPSPSLPIKVS 300

Query: 301 SISTTNENRGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQMQKELAEKL 360
           SISTTNEN+GVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQMQKELAEKL
Sbjct: 301 SISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQMQKELAEKL 360

Query: 361 KRIPLMKKVGGSSSANSSVVKLEEKAKPPSGILGPLSTTNDATTLSTGVVSSSSTLPSAA 420
           K+IPLMKKVGGSSSANSSVVKLEEKAKPPSG+LG LSTTNDATTLSTGVVSSSST PSAA
Sbjct: 361 KKIPLMKKVGGSSSANSSVVKLEEKAKPPSGVLGQLSTTNDATTLSTGVVSSSSTFPSAA 420

Query: 421 NALDGGINVPAGLTSIPHIEAVKRAQELAARMGFRQDPEFAPLINLFPGNVATDVAVPQK 480
           NALD GINVPAGLTSIPHIEAVKRAQELAARMGFRQDPEFAPLINLFPGN+ATDVAVPQK
Sbjct: 421 NALDVGINVPAGLTSIPHIEAVKRAQELAARMGFRQDPEFAPLINLFPGNIATDVAVPQK 480

Query: 481 PTKAPVLRLDALGREIDEQGNVVNITKPSNLSTLKVNINKQKKDAFQILKPELDVDPDSN 540
           PTKAPVLRLDALGREIDEQGNVVNITKPSNLSTLKVNINKQKKDAFQILKPELDVDPDSN
Sbjct: 481 PTKAPVLRLDALGREIDEQGNVVNITKPSNLSTLKVNINKQKKDAFQILKPELDVDPDSN 540

Query: 541 PHFDERMGINKTKLLRPKRMSFQFVEEGKWSKEAETLKLRSKFGEAQAKERREKQAQLAK 600
           PHFDERMGINKTKLLRPKRMSFQFVEEGKWSKEAETLKLRSKFGEAQAKER+EKQAQLAK
Sbjct: 541 PHFDERMGINKTKLLRPKRMSFQFVEEGKWSKEAETLKLRSKFGEAQAKERKEKQAQLAK 600

Query: 601 AKAAPDINPNLIEVSERVVKEKTKDPIPEIEWWDVPLLQSGAYKDLGDGFVADDKLRKDK 660
           AKAAPDINPNLIEVSERVVKEKTKDPIPEIEWWDVPLL S  Y+DLGDGFVAD+KLRKDK
Sbjct: 601 AKAAPDINPNLIEVSERVVKEKTKDPIPEIEWWDVPLLHSSTYEDLGDGFVADEKLRKDK 660

Query: 661 ITIYVEHPRPIEPPAEPALPPPQPLKLTKKEQKKLRTQRRLAKEKDRQEMIRQGLIEPPK 720
           ITIYVEHPRPIEPPAEPA PPPQPLKLTKKEQKKLRTQRRLAKEKDRQEMIRQGLIEPPK
Sbjct: 661 ITIYVEHPRPIEPPAEPAPPPPQPLKLTKKEQKKLRTQRRLAKEKDRQEMIRQGLIEPPK 720

Query: 721 PKVKMSNLMKVLGSEATQDPTKLEKEIRAAAAEREQAHIDRNIARKLTPAERREKKERKL 780
           PKVKMSNLMKVLGSEATQDPTKLEKEIRAAAAEREQAHIDRNIARKLTPAERREKKERKL
Sbjct: 721 PKVKMSNLMKVLGSEATQDPTKLEKEIRAAAAEREQAHIDRNIARKLTPAERREKKERKL 780

Query: 781 FDDSNSLETFVSVYKINDLSHPQARFKVDVNARENRLTGCAVICDGISVLVVEGGSKSIK 840
           FDDSNSLETFVSVYKINDLSHPQARFKVDVNARENRLTGCAVICDGISVLVVEGGSKSIK
Sbjct: 781 FDDSNSLETFVSVYKINDLSHPQARFKVDVNARENRLTGCAVICDGISVLVVEGGSKSIK 840

Query: 841 RYAKLMLRRINWAASVKEEEEEENDDKPLNKCSLVWQGSVAKSSFNRFSIQECMTEAAAR 900
           RYAKLMLRRINWAASVKEEEEEE DDKP+NKCSLVWQGSVAKSSFNRFSIQECMTEAAAR
Sbjct: 841 RYAKLMLRRINWAASVKEEEEEETDDKPVNKCSLVWQGSVAKSSFNRFSIQECMTEAAAR 900

Query: 901 KIFADAGVGHYWDFAINFSDDQL 924
           KIFADAGVGHYWDFA+NFSDDQ+
Sbjct: 901 KIFADAGVGHYWDFAVNFSDDQI 923

[Close]

BLAST of CsaV3_5G006530 vs. NCBI nr
Match: XP_038893249.1 (protein RDM16 isoform X1 [Benincasa hispida])

HSP 1 Score: 1600.5 bits (4143), Expect = 0.0e+00
Identity = 861/923 (93.28%), Postives = 894/923 (96.86%), Query Frame = 0


Query: 1   MDRVSEKEKSSKRSREERDRDHKHRSRDTEDKHLSKDEKHRESDRHHRRRHHRSDRDSKR 60
           MDR+SEKEKSSKRSREERDRDHKHRSRDTE+KH SKDEKHRESD HHRRRHHRSDRDSKR
Sbjct: 1   MDRLSEKEKSSKRSREERDRDHKHRSRDTEEKHFSKDEKHRESDHHHRRRHHRSDRDSKR 60

Query: 61  ERSHEPREHKHRRDMSPDERESSQDRDFKRERSYELREERERSRDRDSSKREKSNEPRGL 120
           ERSHEPREHKHRRD SPDER SSQDRDFKRERS++LREERERSRDRDSSKRE+SNEPRGL
Sbjct: 61  ERSHEPREHKHRRDRSPDERGSSQDRDFKRERSHDLREERERSRDRDSSKRERSNEPRGL 120

Query: 121 REGSEERGKLREVRREESDNEHEREGSFEPIQNSVRPNKRKERGGSEDRFDGGEKRARAS 180
           R GSEERGKLREVRRE+S++E EREGS EPI NSV  NKRK+RGGSEDRFDGGEKRARAS
Sbjct: 121 RAGSEERGKLREVRREQSEDEREREGSLEPIHNSVGSNKRKKRGGSEDRFDGGEKRARAS 180

Query: 181 EVGNEVNGAEMDEKKERRRFADGEKDEGANLSGRGRRDRKRFEDRGKEEDNGGNVDEKHG 240
           E GNEVNGAEMDEKKERRRFAD EKDE ANLSGRGRR+RKRFEDR KEEDNGGNVDE+H 
Sbjct: 181 EGGNEVNGAEMDEKKERRRFADSEKDEEANLSGRGRRERKRFEDRVKEEDNGGNVDERHA 240

Query: 241 KVNEYKSKGDVGDGKVQFGGTTDEKRSLGNGSMVEPTDMPSASVPQNLLHPSHSLPIKVS 300
           KVNE KSKGDVGD KVQFGGTTDEK SLGNGSMVEPTDM S SVPQNL+HPSHSLPIKVS
Sbjct: 241 KVNELKSKGDVGDVKVQFGGTTDEKGSLGNGSMVEPTDMSSTSVPQNLIHPSHSLPIKVS 300

Query: 301 SISTTNENRGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQMQKELAEKL 360
           SISTTNEN+GVSITRSHEVHGKSSTDGTS+TAGKSGNLSLDALAKAKKALQMQKELAEKL
Sbjct: 301 SISTTNENKGVSITRSHEVHGKSSTDGTSATAGKSGNLSLDALAKAKKALQMQKELAEKL 360

Query: 361 KRIPLMKKVGGSSSANSSVVKLEEKAKPPSGILGPLSTTNDATTLSTGVVSSSSTLPSAA 420
           K+IPLMKKVGGSSSA+SSV+KLEEK KPP+G+LG L TTNDAT+LSTGV SSSSTLPSAA
Sbjct: 361 KKIPLMKKVGGSSSASSSVMKLEEKPKPPAGVLGQLPTTNDATSLSTGVASSSSTLPSAA 420

Query: 421 NALDGGINVPAGLTSIPHIEAVKRAQELAARMGFRQDPEFAPLINLFPGNVATDVAVPQK 480
           NALDGGINVPAGLTSIPH EAVKRAQELAARMGFRQDPEFAPLINLFPGN+ATDVAVPQK
Sbjct: 421 NALDGGINVPAGLTSIPHFEAVKRAQELAARMGFRQDPEFAPLINLFPGNIATDVAVPQK 480

Query: 481 PTKAPVLRLDALGREIDEQGNVVNITKPSNLSTLKVNINKQKKDAFQILKPELDVDPDSN 540
           PTKAPVLRLDALGREIDEQGNVVNITKPSNLSTLKVNINKQKKDAFQILKPELDVDPDSN
Sbjct: 481 PTKAPVLRLDALGREIDEQGNVVNITKPSNLSTLKVNINKQKKDAFQILKPELDVDPDSN 540

Query: 541 PHFDERMGINKTKLLRPKRMSFQFVEEGKWSKEAETLKLRSKFGEAQAKERREKQAQLAK 600
           PHFDERMGINKTKLLRPKRMSFQFVEEGKWSKEAET+KL+SKFGEAQAKER+EKQAQLAK
Sbjct: 541 PHFDERMGINKTKLLRPKRMSFQFVEEGKWSKEAETIKLKSKFGEAQAKERKEKQAQLAK 600

Query: 601 AKAAPDINPNLIEVSERVVKEKTKDPIPEIEWWDVPLLQSGAYKDLGDGFVADDKLRKDK 660
           AKAAPDINPNLIEVSERV+KEKTK+PIPEIEWWDVPLL SG Y+D+GDGFVADDKLRKDK
Sbjct: 601 AKAAPDINPNLIEVSERVMKEKTKEPIPEIEWWDVPLLHSGTYEDVGDGFVADDKLRKDK 660

Query: 661 ITIYVEHPRPIEPPAEPALPPPQPLKLTKKEQKKLRTQRRLAKEKDRQEMIRQGLIEPPK 720
           ITIYVEHPRPIEPPAEPA PPPQPLKLTKKEQKKLRTQRRLAKEKDRQEMIRQGLIEPPK
Sbjct: 661 ITIYVEHPRPIEPPAEPAPPPPQPLKLTKKEQKKLRTQRRLAKEKDRQEMIRQGLIEPPK 720

Query: 721 PKVKMSNLMKVLGSEATQDPTKLEKEIRAAAAEREQAHIDRNIARKLTPAERREKKERKL 780
           PKVKMSNLMKVLGSEATQDPTKLEKEIRAAAAEREQAHIDRNIARKLTPAERREKKERKL
Sbjct: 721 PKVKMSNLMKVLGSEATQDPTKLEKEIRAAAAEREQAHIDRNIARKLTPAERREKKERKL 780

Query: 781 FDDSNSLETFVSVYKINDLSHPQARFKVDVNARENRLTGCAVICDGISVLVVEGGSKSIK 840
           FDDSNSLETFVSVYKINDLSHPQARFKVDVNARENRLTGCAVICDGISVLVVEGGSKSIK
Sbjct: 781 FDDSNSLETFVSVYKINDLSHPQARFKVDVNARENRLTGCAVICDGISVLVVEGGSKSIK 840

Query: 841 RYAKLMLRRINWAASVKEEEEEENDDKPLNKCSLVWQGSVAKSSFNRFSIQECMTEAAAR 900
           RY KLMLRRINWAASVKEEEEEENDD+P+NKCSLVWQGSVAKSSFNRFSIQECMTEAAAR
Sbjct: 841 RYGKLMLRRINWAASVKEEEEEENDDRPVNKCSLVWQGSVAKSSFNRFSIQECMTEAAAR 900

Query: 901 KIFADAGVGHYWDFAINFSDDQL 924
           KIFADAGVGHYWDFA+N+SDDQ+
Sbjct: 901 KIFADAGVGHYWDFAVNYSDDQI 923

[Close]

BLAST of CsaV3_5G006530 vs. NCBI nr
Match: XP_022139030.1 (protein RDM16 isoform X1 [Momordica charantia])

HSP 1 Score: 1503.8 bits (3892), Expect = 0.0e+00
Identity = 823/934 (88.12%), Postives = 868/934 (92.93%), Query Frame = 0


Query: 1   MDRVSEKEKSSKRSREERDRDHKHRSRDTEDKHLSKDEKHRESDRHHRRRHHRSDRDSKR 60
           MDRVSEKEKSSKRSR+ERDRD KHRSRD ++KH SKDEKHRESD HHRRRHHRSDRDSKR
Sbjct: 1   MDRVSEKEKSSKRSRDERDRDQKHRSRDADEKHSSKDEKHRESDHHHRRRHHRSDRDSKR 60

Query: 61  ERSHEPREHKHRRDMSPDERESSQDRDFKRERSYELREERERSRDRDSSKREKSNEPRGL 120
           ERSHEP +HKHRRD SPDE ESSQD DFKRERSY+LR+ERERSRDRDSSKRE+SNEPR  
Sbjct: 61  ERSHEPLDHKHRRDRSPDEHESSQDHDFKRERSYDLRDERERSRDRDSSKRERSNEPRVE 120

Query: 121 REGSEERGKLREVRREESDNEHEREGSFEPIQNSVRPNKRKERGGSEDRFDGGEKRARAS 180
           REGS+ERGKLRE RRE+SD+E EREGSFEPIQN+VR NKRK+RGGSEDRFDGGEKRARAS
Sbjct: 121 REGSKERGKLREARREQSDDECEREGSFEPIQNTVRSNKRKDRGGSEDRFDGGEKRARAS 180

Query: 181 ---------EVGNEVNGAEMDEKKERRRFADGEKDEGANLSGRGRRDRKRFEDRGKEEDN 240
                    E G EVNGAEMDEKKERRRFADGEKD+ ANLSGRGRR+RKRFED   EEDN
Sbjct: 181 EDGKDLRRIEDGKEVNGAEMDEKKERRRFADGEKDDEANLSGRGRRERKRFEDWVNEEDN 240

Query: 241 GGNVDEKHGKVNEYKSKGDVGDGKVQFGGTTDEKRSLGNGSMVEPTDMPSASVPQNLLHP 300
           GGNVDEKH  VN++KSKG+VGDGK+Q GGTTD   SLGNGS VEP DM SASVPQ+L+HP
Sbjct: 241 GGNVDEKHANVNKHKSKGNVGDGKIQIGGTTDVS-SLGNGSTVEPIDMSSASVPQSLVHP 300

Query: 301 SHSLPIKVSSISTTNENRGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQ 360
           SHS+PIKVSSISTTNEN+GVSITRSHEVHGKSSTDG SSTAGKSGNLSLDALAKAKKALQ
Sbjct: 301 SHSIPIKVSSISTTNENKGVSITRSHEVHGKSSTDGPSSTAGKSGNLSLDALAKAKKALQ 360

Query: 361 MQKELAEKLKRIPLMKKVGGSSSANSSVVKLEEKAKPPSGILGPLSTTNDATTLSTGVVS 420
           MQKELAEKLK+IPLMKK GGSSSA+SSVVKLE+K+KP  G+LGP  TTN  TT+S GV S
Sbjct: 361 MQKELAEKLKKIPLMKKDGGSSSASSSVVKLEDKSKPAGGVLGPSPTTNIGTTISAGVAS 420

Query: 421 SSSTLPSAANALDGGINVPAGLTSIPHIEAVKRAQELAARMGFRQDPEFAPLINLFPGNV 480
           SSSTLP+A N   GGINVPAGLTSIPH EAVKRAQELAARMGFRQDPEFAPLINLFPGN+
Sbjct: 421 SSSTLPAATNTHGGGINVPAGLTSIPHFEAVKRAQELAARMGFRQDPEFAPLINLFPGNI 480

Query: 481 ATDVAVPQKPTKAPVLRLDALGREIDEQGNVVNITKPSNLSTLKVNINKQKKDAFQILKP 540
           ATDVAVPQKP KAPVLRLDALGREIDEQGNVVNITKPSNLSTLKVNINKQKKDAFQILKP
Sbjct: 481 ATDVAVPQKPVKAPVLRLDALGREIDEQGNVVNITKPSNLSTLKVNINKQKKDAFQILKP 540

Query: 541 ELDVDPDSNPHFDERMGINKTKLLRPKRMSFQFVEEGKWSKEAETLKLRSKFGEAQAKER 600
           EL+VDP+SNPHFDERMGINKTKLLRPKRM+FQFVEEGKWSKEAET+KLRSKFGEAQAKER
Sbjct: 541 ELEVDPESNPHFDERMGINKTKLLRPKRMNFQFVEEGKWSKEAETIKLRSKFGEAQAKER 600

Query: 601 REKQAQLAKAKAAPDINPNLIEVSERV-VKEKTKDPIPEIEWWDVPLLQSGAYKDLGDGF 660
           REKQAQLAKAKAAPDINPNLIEVSERV VKEKTK+PIPEIEWWDV LL SG Y D+GDGF
Sbjct: 601 REKQAQLAKAKAAPDINPNLIEVSERVIVKEKTKEPIPEIEWWDVSLLHSGTYDDVGDGF 660

Query: 661 VADDKLRKDKITIYVEHPRPIEPPAEPALPPPQPLKLTKKEQKKLRTQRRLAKEKDRQEM 720
           VA+DK+RKDKITIYVEHPRPIEPP EPA PPPQPLKLTKKEQKKLRTQRRLAKEKDRQEM
Sbjct: 661 VANDKIRKDKITIYVEHPRPIEPPVEPAPPPPQPLKLTKKEQKKLRTQRRLAKEKDRQEM 720

Query: 721 IRQGLIEPPKPKVKMSNLMKVLGSEATQDPTKLEKEIRAAAAEREQAHIDRNIARKLTPA 780
           IRQGLIEPPKPKVKMSNLMKVLGSEATQDPTKLEKEIRAAAAEREQAHIDRNIARKLTPA
Sbjct: 721 IRQGLIEPPKPKVKMSNLMKVLGSEATQDPTKLEKEIRAAAAEREQAHIDRNIARKLTPA 780

Query: 781 ERREKKERKLFDDSNSLETFVSVYKINDLSHPQARFKVDVNARENRLTGCAVICDGISVL 840
           ERREKKERKLFDD+NSLE FVSVYKI DLSHPQARFKVDVNARENRLTGCAVICDGISVL
Sbjct: 781 ERREKKERKLFDDANSLENFVSVYKIYDLSHPQARFKVDVNARENRLTGCAVICDGISVL 840

Query: 841 VVEGGSKSIKRYAKLMLRRINWAASVKEEEE-EENDDKPLNKCSLVWQGSVAKSSFNRFS 900
           VVEGGSKSIKRY KLMLRRINWAASVKEEEE +E+DDKP+NKCSLVWQGSVAKSSFN+F 
Sbjct: 841 VVEGGSKSIKRYGKLMLRRINWAASVKEEEEADESDDKPVNKCSLVWQGSVAKSSFNKFF 900

Query: 901 IQECMTEAAARKIFADAGVGHYWDFAINFSDDQL 924
           IQECMTEAAARKIFADAGVGHYWD A+NFSDDQ+
Sbjct: 901 IQECMTEAAARKIFADAGVGHYWDLAVNFSDDQI 933

[Close]

BLAST of CsaV3_5G006530 vs. NCBI nr
Match: XP_022139031.1 (protein RDM16 isoform X2 [Momordica charantia])

HSP 1 Score: 1494.9 bits (3869), Expect = 0.0e+00
Identity = 819/934 (87.69%), Postives = 864/934 (92.51%), Query Frame = 0


Query: 1   MDRVSEKEKSSKRSREERDRDHKHRSRDTEDKHLSKDEKHRESDRHHRRRHHRSDRDSKR 60
           MDRVSEKEKSSKRSR+ERDRD KHRSRD ++KH SKDEKHRESD HHRRRHHRSDRDSKR
Sbjct: 1   MDRVSEKEKSSKRSRDERDRDQKHRSRDADEKHSSKDEKHRESDHHHRRRHHRSDRDSKR 60

Query: 61  ERSHEPREHKHRRDMSPDERESSQDRDFKRERSYELREERERSRDRDSSKREKSNEPRGL 120
           ERSHEP +HKHRRD SPDE ESSQD DFKRERSY+LR+ERERSRDRDSSKRE+SNEPR  
Sbjct: 61  ERSHEPLDHKHRRDRSPDEHESSQDHDFKRERSYDLRDERERSRDRDSSKRERSNEPRVE 120

Query: 121 REGSEERGKLREVRREESDNEHEREGSFEPIQNSVRPNKRKERGGSEDRFDGGEKRARAS 180
           REGS+ERGKLRE RRE+SD+E EREGSFEPIQN+VR NKRK+RGGSEDRFDGGEKRARAS
Sbjct: 121 REGSKERGKLREARREQSDDECEREGSFEPIQNTVRSNKRKDRGGSEDRFDGGEKRARAS 180

Query: 181 ---------EVGNEVNGAEMDEKKERRRFADGEKDEGANLSGRGRRDRKRFEDRGKEEDN 240
                    E G EVNGAEMDEKKERRRFADGEKD+ ANLSGRGRR+RKRFED   EEDN
Sbjct: 181 EDGKDLRRIEDGKEVNGAEMDEKKERRRFADGEKDDEANLSGRGRRERKRFEDWVNEEDN 240

Query: 241 GGNVDEKHGKVNEYKSKGDVGDGKVQFGGTTDEKRSLGNGSMVEPTDMPSASVPQNLLHP 300
           GGNVDEKH  VN++KSKG+VGDGK+Q GGTTD       GS VEP DM SASVPQ+L+HP
Sbjct: 241 GGNVDEKHANVNKHKSKGNVGDGKIQIGGTTD-------GSTVEPIDMSSASVPQSLVHP 300

Query: 301 SHSLPIKVSSISTTNENRGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQ 360
           SHS+PIKVSSISTTNEN+GVSITRSHEVHGKSSTDG SSTAGKSGNLSLDALAKAKKALQ
Sbjct: 301 SHSIPIKVSSISTTNENKGVSITRSHEVHGKSSTDGPSSTAGKSGNLSLDALAKAKKALQ 360

Query: 361 MQKELAEKLKRIPLMKKVGGSSSANSSVVKLEEKAKPPSGILGPLSTTNDATTLSTGVVS 420
           MQKELAEKLK+IPLMKK GGSSSA+SSVVKLE+K+KP  G+LGP  TTN  TT+S GV S
Sbjct: 361 MQKELAEKLKKIPLMKKDGGSSSASSSVVKLEDKSKPAGGVLGPSPTTNIGTTISAGVAS 420

Query: 421 SSSTLPSAANALDGGINVPAGLTSIPHIEAVKRAQELAARMGFRQDPEFAPLINLFPGNV 480
           SSSTLP+A N   GGINVPAGLTSIPH EAVKRAQELAARMGFRQDPEFAPLINLFPGN+
Sbjct: 421 SSSTLPAATNTHGGGINVPAGLTSIPHFEAVKRAQELAARMGFRQDPEFAPLINLFPGNI 480

Query: 481 ATDVAVPQKPTKAPVLRLDALGREIDEQGNVVNITKPSNLSTLKVNINKQKKDAFQILKP 540
           ATDVAVPQKP KAPVLRLDALGREIDEQGNVVNITKPSNLSTLKVNINKQKKDAFQILKP
Sbjct: 481 ATDVAVPQKPVKAPVLRLDALGREIDEQGNVVNITKPSNLSTLKVNINKQKKDAFQILKP 540

Query: 541 ELDVDPDSNPHFDERMGINKTKLLRPKRMSFQFVEEGKWSKEAETLKLRSKFGEAQAKER 600
           EL+VDP+SNPHFDERMGINKTKLLRPKRM+FQFVEEGKWSKEAET+KLRSKFGEAQAKER
Sbjct: 541 ELEVDPESNPHFDERMGINKTKLLRPKRMNFQFVEEGKWSKEAETIKLRSKFGEAQAKER 600

Query: 601 REKQAQLAKAKAAPDINPNLIEVSERV-VKEKTKDPIPEIEWWDVPLLQSGAYKDLGDGF 660
           REKQAQLAKAKAAPDINPNLIEVSERV VKEKTK+PIPEIEWWDV LL SG Y D+GDGF
Sbjct: 601 REKQAQLAKAKAAPDINPNLIEVSERVIVKEKTKEPIPEIEWWDVSLLHSGTYDDVGDGF 660

Query: 661 VADDKLRKDKITIYVEHPRPIEPPAEPALPPPQPLKLTKKEQKKLRTQRRLAKEKDRQEM 720
           VA+DK+RKDKITIYVEHPRPIEPP EPA PPPQPLKLTKKEQKKLRTQRRLAKEKDRQEM
Sbjct: 661 VANDKIRKDKITIYVEHPRPIEPPVEPAPPPPQPLKLTKKEQKKLRTQRRLAKEKDRQEM 720

Query: 721 IRQGLIEPPKPKVKMSNLMKVLGSEATQDPTKLEKEIRAAAAEREQAHIDRNIARKLTPA 780
           IRQGLIEPPKPKVKMSNLMKVLGSEATQDPTKLEKEIRAAAAEREQAHIDRNIARKLTPA
Sbjct: 721 IRQGLIEPPKPKVKMSNLMKVLGSEATQDPTKLEKEIRAAAAEREQAHIDRNIARKLTPA 780

Query: 781 ERREKKERKLFDDSNSLETFVSVYKINDLSHPQARFKVDVNARENRLTGCAVICDGISVL 840
           ERREKKERKLFDD+NSLE FVSVYKI DLSHPQARFKVDVNARENRLTGCAVICDGISVL
Sbjct: 781 ERREKKERKLFDDANSLENFVSVYKIYDLSHPQARFKVDVNARENRLTGCAVICDGISVL 840

Query: 841 VVEGGSKSIKRYAKLMLRRINWAASVKEEEE-EENDDKPLNKCSLVWQGSVAKSSFNRFS 900
           VVEGGSKSIKRY KLMLRRINWAASVKEEEE +E+DDKP+NKCSLVWQGSVAKSSFN+F 
Sbjct: 841 VVEGGSKSIKRYGKLMLRRINWAASVKEEEEADESDDKPVNKCSLVWQGSVAKSSFNKFF 900

Query: 901 IQECMTEAAARKIFADAGVGHYWDFAINFSDDQL 924
           IQECMTEAAARKIFADAGVGHYWD A+NFSDDQ+
Sbjct: 901 IQECMTEAAARKIFADAGVGHYWDLAVNFSDDQI 927

[Close]

BLAST of CsaV3_5G006530 vs. ExPASy Swiss-Prot
Match: Q9C7E7 (Protein RDM16 OS=Arabidopsis thaliana OX=3702 GN=RDM16 PE=2 SV=1)

HSP 1 Score: 738.0 bits (1904), Expect = 1.3e-211
Identity = 476/854 (55.74%), Postives = 585/854 (68.50%), Query Frame = 0


Query: 80  RESSQDRDFKRERSYELREERERSRDRD-SSKREKSNEPRGLREG--SEERGKLREVRRE 139
           R    DRD      +  + E  R RDRD  SKR  S+  R  R G   +ER + ++ RR 
Sbjct: 8   RSHRDDRDRDSSPDHSPQREGGRRRDRDVDSKRRDSDHYRSSRRGDREDERDRTKD-RRG 67

Query: 140 ESDNEHEREGSFEPIQNSVRPNKRKERGGSEDRFDGGEKRARASEVGNEVNGAEMDEKKE 199
            S    EREGS    ++  + +  +   GS+++    +++ R  E     NGA   + K+
Sbjct: 68  RSVERGEREGS----RDREKHHHERSHEGSKEKESRSKRKDREEE-----NGAR--DGKK 127

Query: 200 RRRFADGEKDEGANLSGRGRRDRKRFEDRGKEEDNGGNVDEKHGKVNEYKSKGDVGDGKV 259
           + RFAD          G G R R RFED   E      V+ K  +V+E     +   G V
Sbjct: 128 KSRFAD----------GNGER-RSRFEDVAIE------VENKDAQVSEGSGATNPTSG-V 187

Query: 260 QFGGTTDEKRSLGNGSMVEPTDMPSASVPQNL-LHPSHSLPIKVSSISTTNENRGVSITR 319
             G +T                   +S+P      PS +L  KVSSISTT+EN+  S+ R
Sbjct: 188 TMGAST------------------YSSIPSEASAAPSQTLLTKVSSISTTDENK-ASVVR 247

Query: 320 SHEVHGKSSTDGTS-STAGK-SGNLSLDA---LAKAKKALQMQKELAEKLKRIPLMKKVG 379
           SHEV GKSSTDG   STAGK S NL LD+    AKA+KALQ+QK LA++LK +PL+KK  
Sbjct: 248 SHEVPGKSSTDGRPLSTAGKSSANLPLDSSALAAKARKALQLQKGLADRLKNLPLLKKAT 307

Query: 380 GSSSANSSVVKLEEKAKPPSGILGPLSTTNDATTLSTGVVSSSSTLPSAANALDGGINVP 439
             +S  S   ++            P STT  A  +STG  S +STLP             
Sbjct: 308 KPTSEGSPHTRV------------PPSTTTPA--VSTG-TSFASTLPHTG---------L 367

Query: 440 AGLTSIPHIEAVKRAQELAARMGFRQDPEFAPLINLFPGNVATDVAVPQKPTKAPVLRLD 499
           AG  SI +IEAVKRAQELAA MGF QD EFAP+INLFPG   +D+ V Q+P K PVLR+D
Sbjct: 368 AGFGSIANIEAVKRAQELAANMGFHQDREFAPVINLFPGQAPSDMTVAQRPEKPPVLRVD 427

Query: 500 ALGREIDEQGNVVNITKPSNLSTLKVNINKQKKDAFQILKPELDVDPDSNPHFDERMGIN 559
           ALGREIDE GNV+++TKPSNLSTLKVNINK+KKDAFQILKP+L+ D   NP+FD RMGI+
Sbjct: 428 ALGREIDEHGNVISVTKPSNLSTLKVNINKKKKDAFQILKPQLEADLKENPYFDTRMGID 487

Query: 560 KTKLLRPKRMSFQFVEEGKWSKEAETLKLRSKFGEAQAKERREKQAQLAKAKAAPDINPN 619
           + K+LRPKRMSFQFVEEGKW+++AE LK +S FGEA+AKE + KQAQLAKA    DINPN
Sbjct: 488 EKKILRPKRMSFQFVEEGKWTRDAENLKFKSHFGEAKAKELKVKQAQLAKAN--DDINPN 547

Query: 620 LIEVSERVV-KEKTKDPIPEIEWWDVPLLQSGAYKDLGDGFVADDKLRKDKITIYVEHPR 679
           LIEVSERV  KEK K+PIP++EWWD  +L +G Y ++ DG + +  L+ +K+T Y+EHPR
Sbjct: 548 LIEVSERVPRKEKPKEPIPDVEWWDANVLTNGEYGEITDGTITESHLKIEKLTHYIEHPR 607

Query: 680 PIEPPAEPALPPPQPLKLTKKEQKKLRTQRRLAKEKDRQEMIRQGLIEPPKPKVKMSNLM 739
           PIEPPAE A PPPQPLKLTKKEQKKLRTQRRLAKEK++QEMIRQGL+EPPK KVKMSNLM
Sbjct: 608 PIEPPAEAAPPPPQPLKLTKKEQKKLRTQRRLAKEKEKQEMIRQGLLEPPKAKVKMSNLM 667

Query: 740 KVLGSEATQDPTKLEKEIRAAAAEREQAHIDRNIARKLTPAERREKKERKLFDDSNSLET 799
           KVLGSEATQDPTKLEKEIR AAAEREQAH DRN ARKLTPAE+REKKERKLFDD  ++ET
Sbjct: 668 KVLGSEATQDPTKLEKEIRTAAAEREQAHTDRNAARKLTPAEKREKKERKLFDDPTTVET 727

Query: 800 FVSVYKINDLSHPQARFKVDVNARENRLTGCAVICDGISVLVVEGGSKSIKRYAKLMLRR 859
            VSVYKI  LSHP+ RFKV++NARENRLTGC+V+ D +SV+VVEG SK+IKRY KLM++R
Sbjct: 728 IVSVYKIKKLSHPKTRFKVEMNARENRLTGCSVMTDEMSVVVVEGKSKAIKRYGKLMMKR 786

Query: 860 INWAASVKEE--EEEENDDKPLNKCSLVWQGSVAKSSFNRFSIQECMTEAAARKIFADAG 919
           INW  + ++E  E+EE +    NKC LVWQGS+ K SF+RF + EC+TE+ A+K+F DAG
Sbjct: 788 INWEEAERKEGNEDEEEEVNGGNKCWLVWQGSIGKPSFHRFHVHECVTESTAKKVFMDAG 786

Query: 920 VGHYWDFAINFSDD 922
           V HYWD A+N+SDD
Sbjct: 848 VVHYWDLAVNYSDD 786

[Close]

BLAST of CsaV3_5G006530 vs. ExPASy Swiss-Prot
Match: Q5ZJ85 (U4/U6 small nuclear ribonucleoprotein Prp3 OS=Gallus gallus OX=9031 GN=PRPF3 PE=2 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 2.0e-71
Identity = 213/633 (33.65%), Postives = 331/633 (52.29%), Query Frame = 0


Query: 320 HGKSSTDGT-----SSTAGKSGNLSLDALAKAKKALQMQKELAEKLKRIP--------LM 379
           H KS++D           G    +S ++    K+ +   +E+ ++ + IP        ++
Sbjct: 78  HSKSNSDRNRKRELKDVFGDDSEVSKESSGVKKRRIPRFEEVEDEPEVIPGPPSESPGML 137

Query: 380 KKVGGSSSANSSVVKLEEKAKPPSGILGP-----LSTTNDATTLSTGVVSSSSTLPSAAN 439
            K+       ++  ++EE+ K  S I  P     +S+++ +  L  G     S   +  N
Sbjct: 138 TKLQIKQMMEAATRQIEERKKQLSFISPPTPQPKISSSSQSERLPIGNTVQPSQAATFMN 197

Query: 440 ALDGGINVPAGLTSIPHIEAVKRAQELAARM--------GFRQDPEFAPLINLFPGNVAT 499
                            IE  ++A EL AR+        G   +     L NL    +A 
Sbjct: 198 ---------------DAIEKARKAAELQARIQAQLALKPGLIGNANMVGLANLHAMGIAP 257

Query: 500 DVAVPQKPTKAPVLRLDALGREIDEQGNVVNITKPSNLSTLKVNINKQKKDAF-QILKPE 559
                +  TK   L LD  GR +D  G  + +T    + TLK NI   K++ F Q LK +
Sbjct: 258 PKVELKDQTKPTPLILDEQGRTVDATGKEIELT--HRMPTLKANIRAVKREQFKQQLKEK 317

Query: 560 LDVDPDSNPHFDERMGINKTKLLRPKRMSFQFVEEGKWSKEAETLKLRSKFGEAQAKERR 619
              D +SN +FD R+ I  T   R KR +F+F E+GK+ K A+ L+ +++         +
Sbjct: 318 PSEDMESNTYFDLRVSI--TPAQRQKR-TFKFHEKGKFEKIAQRLRTKAQL--------K 377

Query: 620 EKQAQLAKAKAAPDINPNLIEVSERVVKEKTKDPIPEIEWWDVPLLQSGAYKDLGDGFVA 679
           + QA++++A     I+ +         KE  +  IPEIEWWD  ++ +G   DL  G  +
Sbjct: 378 KLQAEISQAARKTGIHTSTKLALITPKKELKEGEIPEIEWWDSYIIPNGL--DLKGG-TS 437

Query: 680 DDKLRKDKITIYVEHPRPIEPPAEPALPPPQPLKLTKKEQKKLRTQRRLAKEKDRQEMIR 739
             K     IT  VEHP  + PP +   P    + LTKKEQKKLR Q R   +K+ QE +R
Sbjct: 438 SKKDEYFGITNLVEHPAQLNPPVDSDTPVTLGVYLTKKEQKKLRRQTRREAQKELQEKVR 497

Query: 740 QGLIEPPKPKVKMSNLMKVLGSEATQDPTKLEKEIRAAAAEREQAHIDRNIARKLTPAER 799
            GL+ PP+PKV++SNLM+VLG+EA QDPTK+E  +RA  A+R++AH + N ARKLT  +R
Sbjct: 498 LGLMPPPEPKVRISNLMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQR 557

Query: 800 REKKERKLFDDSNSLETFVSVYKINDLSHPQARFKVDVNARENRLTGCAVICDGISVLVV 859
           + KK +KL +D  S    ++VY++ +LS+P  +FK++ NA +  LTG  V+   ++V+VV
Sbjct: 558 KAKKIKKLKEDV-SQGVHIAVYRVRNLSNPAKKFKIEANAGQLYLTGVVVLHKDVNVVVV 617

Query: 860 EGGSKSIKRYAKLMLRRINW---AASVKEEEEEENDD---KPLNKCSLVWQGSVAKSSFN 919
           EGG K+ K++ +LML RI W    ++ K E+++E+D+   K  NKCSLVW+G+    SF 
Sbjct: 618 EGGPKAQKKFKRLMLHRIKWDEQTSNTKGEDDDESDEESVKKTNKCSLVWEGTAKDRSFG 677

[Close]

BLAST of CsaV3_5G006530 vs. ExPASy Swiss-Prot
Match: Q922U1 (U4/U6 small nuclear ribonucleoprotein Prp3 OS=Mus musculus OX=10090 GN=Prpf3 PE=1 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 6.4e-70
Identity = 215/632 (34.02%), Postives = 330/632 (52.22%), Query Frame = 0


Query: 320 HGKSSTDGT-----SSTAGKSGNLSLDALAKAKKALQMQKELAEKLKRIP--------LM 379
           H KSS+D +         G    +S ++    K+ +   +E+ E+ + IP        ++
Sbjct: 78  HSKSSSDRSRKRELKEVFGDDSEISKESSGVKKRRIPRFEEVEEEPEVIPGPPSESPGML 137

Query: 380 KKVGGSSSANSSVVKLEEKAKPPSGILGPLSTTNDATTLSTGVVSSSSTLPSAANALDGG 439
            K+       ++  ++EE+ K  S I  P      A    T   S    LP       G 
Sbjct: 138 TKLQIKQMMEAATRQIEERKKQLSFISPP------APQPKTPSSSQPERLPI------GN 197

Query: 440 INVPAGLTSIPH--IEAVKRAQELAARM--------GFRQDPEFAPLINLFPGNVATDVA 499
              P+   +  +  IE  ++A EL AR+        G   +     L NL    +A    
Sbjct: 198 TIQPSQAATFMNDAIEKARKAAELQARIQAQLALKPGLIGNANMVGLANLHAMGIAPPKV 257

Query: 500 VPQKPTKAPVLRLDALGREIDEQGNVVNITKPSNLSTLKVNINKQKKDAF-QILKPELDV 559
             +  TK   L LD  GR +D  G  V +T    + TLK NI   K++ F Q LK +   
Sbjct: 258 ELKDQTKPTPLILDEQGRTVDATGKEVELT--HRMPTLKANIRAVKREQFKQQLKEKPSE 317

Query: 560 DPDSNPHFDERMGINKTKLLRPKRMSFQFVEEGKWSKEAETLKLRSKFGEAQAKERREKQ 619
           D +SN  FD R+ I  +   + +R +F+F ++GK+ K A+ L+ +++  + QA      +
Sbjct: 318 DMESNTFFDPRVSIAPS---QRQRRTFKFHDKGKFEKIAQRLRTKAQLEKLQA------E 377

Query: 620 AQLAKAKAAPDINPNLIEVSERVVKEKTKDPIPEIEWWDVPLLQSGAYKDLGDGFVADDK 679
              A  K     +  L  ++ +  KE  +  IPEIEWWD  ++ +G   DL +    ++ 
Sbjct: 378 ISQAARKTGIHTSTRLALIAPK--KELKEGDIPEIEWWDSYIIPNGF--DLTE----ENP 437

Query: 680 LRKD--KITIYVEHPRPIEPPAEPALPPPQPLKLTKKEQKKLRTQRRLAKEKDRQEMIRQ 739
            R+D   IT  VEHP  + PP +   P    + LTKKEQKKLR Q R   +K+ QE +R 
Sbjct: 438 KREDYFGITNLVEHPAQLNPPVDNDTPVTLGVYLTKKEQKKLRRQTRREAQKELQEKVRL 497

Query: 740 GLIEPPKPKVKMSNLMKVLGSEATQDPTKLEKEIRAAAAEREQAHIDRNIARKLTPAERR 799
           GL  PP+PKV++SNLM+VLG+EA QDPTK+E  +RA  A+R++AH + N ARKLT  +R+
Sbjct: 498 GLTPPPEPKVRISNLMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQRK 557

Query: 800 EKKERKLFDDSNSLETFVSVYKINDLSHPQARFKVDVNARENRLTGCAVICDGISVLVVE 859
            KK +KL +D  S    +SVY++ +LS+P  +FK++ NA +  LTG  V+   ++V+VVE
Sbjct: 558 VKKIKKLKEDI-SQGVHISVYRVRNLSNPAKKFKIEANAGQLYLTGVVVLHKDVNVVVVE 617

Query: 860 GGSKSIKRYAKLMLRRINW---AASVKEEEEEENDD---KPLNKCSLVWQGSVAKSSFNR 919
           GG K+ K++ +LML RI W    ++ K +++EE+D+   K  NKC LVW+G+    SF  
Sbjct: 618 GGPKAQKKFKRLMLHRIKWDEQTSNTKGDDDEESDEEAVKKTNKCVLVWEGTAKDRSFGE 677

[Close]

BLAST of CsaV3_5G006530 vs. ExPASy Swiss-Prot
Match: Q2KIA6 (U4/U6 small nuclear ribonucleoprotein Prp3 OS=Bos taurus OX=9913 GN=PRPF3 PE=2 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 8.3e-70
Identity = 211/624 (33.81%), Postives = 333/624 (53.37%), Query Frame = 0


Query: 320 HGKSSTDGT-----SSTAGKSGNLSLDALAKAKKALQMQKELAEKLKRIP--------LM 379
           H KSS+D +         G    +S ++    K+ +   +E+ E+ + IP        ++
Sbjct: 78  HSKSSSDRSRKRDLKEVFGDDSEISKESSGVKKRRIPRFEEVEEEPEVIPGPPSESPGML 137

Query: 380 KKVGGSSSANSSVVKLEEKAKPPSGILGPLSTTNDATTLSTGVVSSSSTL-PS-AANALD 439
            K+       ++  ++EE+ K  S I  P       ++     +   +T+ PS AA  ++
Sbjct: 138 TKLQIKQMMEAATRQIEERKKQLSFISPPTPQPKTPSSSQPERLPIGNTIQPSQAATFMN 197

Query: 440 GGINVPAGLTSIPHIEAVKRAQELAARMGFRQDPEFAPLINLFPGNVATDVAVPQKPTKA 499
             I           ++A  +AQ LA + G   +     L NL    +A      +  TK 
Sbjct: 198 DAIE---KARKAAELQASIQAQ-LALKPGLIGNANMVGLANLHAMGIAPPKVELKDQTKP 257

Query: 500 PVLRLDALGREIDEQGNVVNITKPSNLSTLKVNINKQKKDAF-QILKPELDVDPDSNPHF 559
             L LD  GR +D  G  + +T    + TLK NI   K++ F Q LK +   D +SN  F
Sbjct: 258 TPLILDEQGRTVDATGKEIELT--HRMPTLKANIRAVKREQFKQQLKEKPSEDMESNTFF 317

Query: 560 DERMGINKTKLLRPKRMSFQFVEEGKWSKEAETLKLRSKFGEAQAKERREKQAQLAKAKA 619
           D R+ I  +   + +R +F+F ++GK+ K A+ L+ +++  + QA      +   A  K 
Sbjct: 318 DPRVSIAPS---QRQRRTFKFHDKGKFEKIAQRLRTKAQLEKLQA------EISQAARKT 377

Query: 620 APDINPNLIEVSERVVKEKTKDPIPEIEWWDVPLLQSGAYKDLGDGFVADDKLRKD--KI 679
               +  L  ++ +  KE  +  IPEIEWWD  ++ +G   DL +    ++  R+D   I
Sbjct: 378 GIHTSTRLALIAPK--KELKEGDIPEIEWWDSYIIPNGF--DLTE----ENPKREDYFGI 437

Query: 680 TIYVEHPRPIEPPAEPALPPPQPLKLTKKEQKKLRTQRRLAKEKDRQEMIRQGLIEPPKP 739
           T  VEHP  + PP +   P    + LTKKEQKKLR Q R   +K+ QE +R GL+ PP+P
Sbjct: 438 TNLVEHPAQLNPPVDNDTPVTLGVYLTKKEQKKLRRQTRREAQKELQEKVRLGLMPPPEP 497

Query: 740 KVKMSNLMKVLGSEATQDPTKLEKEIRAAAAEREQAHIDRNIARKLTPAERREKKERKLF 799
           KV++SNLM+VLG+EA QDPTK+E  +RA  A+R++AH + N ARKLT  +R+ KK +KL 
Sbjct: 498 KVRISNLMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQRKVKKIKKLK 557

Query: 800 DDSNSLETFVSVYKINDLSHPQARFKVDVNARENRLTGCAVICDGISVLVVEGGSKSIKR 859
           +D  S    +SVY++ +LS+P  +FK++ NA +  LTG  V+   ++V+VVEGG K+ K+
Sbjct: 558 EDI-SQGVHISVYRVRNLSNPAKKFKIEANAGQLYLTGVVVLHKDVNVVVVEGGPKAQKK 617

Query: 860 YAKLMLRRINW---AASVKEEEEEENDD---KPLNKCSLVWQGSVAKSSFNRFSIQECMT 919
           + +LML RI W    ++ K +++EE+D+   K  NKC LVW+G+    SF     ++C T
Sbjct: 618 FKRLMLHRIKWDEQTSNTKGDDDEESDEEAVKKTNKCVLVWEGTAKDRSFGEMKFKQCPT 677

[Close]

BLAST of CsaV3_5G006530 vs. ExPASy Swiss-Prot
Match: O43395 (U4/U6 small nuclear ribonucleoprotein Prp3 OS=Homo sapiens OX=9606 GN=PRPF3 PE=1 SV=2)

HSP 1 Score: 266.5 bits (680), Expect = 1.1e-69
Identity = 211/631 (33.44%), Postives = 330/631 (52.30%), Query Frame = 0


Query: 320 HGKSSTDGT-----SSTAGKSGNLSLDALAKAKKALQMQKELAEKLKRIP--------LM 379
           H KSS+D +         G    +S ++    K+ +   +E+ E+ + IP        ++
Sbjct: 78  HSKSSSDRSRKRELKEVFGDDSEISKESSGVKKRRIPRFEEVEEEPEVIPGPPSESPGML 137

Query: 380 KKVGGSSSANSSVVKLEEKAKPPSGILGPLSTTNDATTLSTGVVSSSSTL-PSAANALDG 439
            K+       ++  ++EE+ K  S I  P       ++     +   +T+ PS A     
Sbjct: 138 TKLQIKQMMEAATRQIEERKKQLSFISPPTPQPKTPSSSQPERLPIGNTIQPSQAATFMN 197

Query: 440 GINVPAGLTSIPHIEAVKRAQELAARM--------GFRQDPEFAPLINLFPGNVATDVAV 499
                        IE  ++A EL AR+        G   +     L NL    +A     
Sbjct: 198 DA-----------IEKARKAAELQARIQAQLALKPGLIGNANMVGLANLHAMGIAPPKVE 257

Query: 500 PQKPTKAPVLRLDALGREIDEQGNVVNITKPSNLSTLKVNINKQKKDAF-QILKPELDVD 559
            +  TK   L LD  GR +D  G  + +T    + TLK NI   K++ F Q LK +   D
Sbjct: 258 LKDQTKPTPLILDEQGRTVDATGKEIELT--HRMPTLKANIRAVKREQFKQQLKEKPSED 317

Query: 560 PDSNPHFDERMGINKTKLLRPKRMSFQFVEEGKWSKEAETLKLRSKFGEAQAKERREKQA 619
            +SN  FD R+ I  +   + +R +F+F ++GK+ K A+ L+ +++  + QA      + 
Sbjct: 318 MESNTFFDPRVSIAPS---QRQRRTFKFHDKGKFEKIAQRLRTKAQLEKLQA------EI 377

Query: 620 QLAKAKAAPDINPNLIEVSERVVKEKTKDPIPEIEWWDVPLLQSGAYKDLGDGFVADDKL 679
             A  K     +  L  ++ +  KE  +  IPEIEWWD  ++ +G   DL +    ++  
Sbjct: 378 SQAARKTGIHTSTRLALIAPK--KELKEGDIPEIEWWDSYIIPNGF--DLTE----ENPK 437

Query: 680 RKD--KITIYVEHPRPIEPPAEPALPPPQPLKLTKKEQKKLRTQRRLAKEKDRQEMIRQG 739
           R+D   IT  VEHP  + PP +   P    + LTKKEQKKLR Q R   +K+ QE +R G
Sbjct: 438 REDYFGITNLVEHPAQLNPPVDNDTPVTLGVYLTKKEQKKLRRQTRREAQKELQEKVRLG 497

Query: 740 LIEPPKPKVKMSNLMKVLGSEATQDPTKLEKEIRAAAAEREQAHIDRNIARKLTPAERRE 799
           L+ PP+PKV++SNLM+VLG+EA QDPTK+E  +RA  A+R++AH + N ARKLT  +R+ 
Sbjct: 498 LMPPPEPKVRISNLMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQRKV 557

Query: 800 KKERKLFDDSNSLETFVSVYKINDLSHPQARFKVDVNARENRLTGCAVICDGISVLVVEG 859
           KK +KL +D  S    +SVY++ +LS+P  +FK++ NA +  LTG  V+   ++V+VVEG
Sbjct: 558 KKIKKLKEDI-SQGVHISVYRVRNLSNPAKKFKIEANAGQLYLTGVVVLHKDVNVVVVEG 617

Query: 860 GSKSIKRYAKLMLRRINW---AASVKEEEEEENDD---KPLNKCSLVWQGSVAKSSFNRF 919
           G K+ K++ +LML RI W    ++ K +++EE+D+   K  NKC LVW+G+    SF   
Sbjct: 618 GPKAQKKFKRLMLHRIKWDEQTSNTKGDDDEESDEEAVKKTNKCVLVWEGTAKDRSFGEM 677

[Close]

BLAST of CsaV3_5G006530 vs. ExPASy TrEMBL
Match: A0A0A0KLQ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G177130 PE=4 SV=1)

HSP 1 Score: 1709.5 bits (4426), Expect = 0.0e+00
Identity = 923/923 (100.00%), Postives = 923/923 (100.00%), Query Frame = 0


Query: 1   MDRVSEKEKSSKRSREERDRDHKHRSRDTEDKHLSKDEKHRESDRHHRRRHHRSDRDSKR 60
           MDRVSEKEKSSKRSREERDRDHKHRSRDTEDKHLSKDEKHRESDRHHRRRHHRSDRDSKR
Sbjct: 1   MDRVSEKEKSSKRSREERDRDHKHRSRDTEDKHLSKDEKHRESDRHHRRRHHRSDRDSKR 60

Query: 61  ERSHEPREHKHRRDMSPDERESSQDRDFKRERSYELREERERSRDRDSSKREKSNEPRGL 120
           ERSHEPREHKHRRDMSPDERESSQDRDFKRERSYELREERERSRDRDSSKREKSNEPRGL
Sbjct: 61  ERSHEPREHKHRRDMSPDERESSQDRDFKRERSYELREERERSRDRDSSKREKSNEPRGL 120

Query: 121 REGSEERGKLREVRREESDNEHEREGSFEPIQNSVRPNKRKERGGSEDRFDGGEKRARAS 180
           REGSEERGKLREVRREESDNEHEREGSFEPIQNSVRPNKRKERGGSEDRFDGGEKRARAS
Sbjct: 121 REGSEERGKLREVRREESDNEHEREGSFEPIQNSVRPNKRKERGGSEDRFDGGEKRARAS 180

Query: 181 EVGNEVNGAEMDEKKERRRFADGEKDEGANLSGRGRRDRKRFEDRGKEEDNGGNVDEKHG 240
           EVGNEVNGAEMDEKKERRRFADGEKDEGANLSGRGRRDRKRFEDRGKEEDNGGNVDEKHG
Sbjct: 181 EVGNEVNGAEMDEKKERRRFADGEKDEGANLSGRGRRDRKRFEDRGKEEDNGGNVDEKHG 240

Query: 241 KVNEYKSKGDVGDGKVQFGGTTDEKRSLGNGSMVEPTDMPSASVPQNLLHPSHSLPIKVS 300
           KVNEYKSKGDVGDGKVQFGGTTDEKRSLGNGSMVEPTDMPSASVPQNLLHPSHSLPIKVS
Sbjct: 241 KVNEYKSKGDVGDGKVQFGGTTDEKRSLGNGSMVEPTDMPSASVPQNLLHPSHSLPIKVS 300

Query: 301 SISTTNENRGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQMQKELAEKL 360
           SISTTNENRGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQMQKELAEKL
Sbjct: 301 SISTTNENRGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQMQKELAEKL 360

Query: 361 KRIPLMKKVGGSSSANSSVVKLEEKAKPPSGILGPLSTTNDATTLSTGVVSSSSTLPSAA 420
           KRIPLMKKVGGSSSANSSVVKLEEKAKPPSGILGPLSTTNDATTLSTGVVSSSSTLPSAA
Sbjct: 361 KRIPLMKKVGGSSSANSSVVKLEEKAKPPSGILGPLSTTNDATTLSTGVVSSSSTLPSAA 420

Query: 421 NALDGGINVPAGLTSIPHIEAVKRAQELAARMGFRQDPEFAPLINLFPGNVATDVAVPQK 480
           NALDGGINVPAGLTSIPHIEAVKRAQELAARMGFRQDPEFAPLINLFPGNVATDVAVPQK
Sbjct: 421 NALDGGINVPAGLTSIPHIEAVKRAQELAARMGFRQDPEFAPLINLFPGNVATDVAVPQK 480

Query: 481 PTKAPVLRLDALGREIDEQGNVVNITKPSNLSTLKVNINKQKKDAFQILKPELDVDPDSN 540
           PTKAPVLRLDALGREIDEQGNVVNITKPSNLSTLKVNINKQKKDAFQILKPELDVDPDSN
Sbjct: 481 PTKAPVLRLDALGREIDEQGNVVNITKPSNLSTLKVNINKQKKDAFQILKPELDVDPDSN 540

Query: 541 PHFDERMGINKTKLLRPKRMSFQFVEEGKWSKEAETLKLRSKFGEAQAKERREKQAQLAK 600
           PHFDERMGINKTKLLRPKRMSFQFVEEGKWSKEAETLKLRSKFGEAQAKERREKQAQLAK
Sbjct: 541 PHFDERMGINKTKLLRPKRMSFQFVEEGKWSKEAETLKLRSKFGEAQAKERREKQAQLAK 600

Query: 601 AKAAPDINPNLIEVSERVVKEKTKDPIPEIEWWDVPLLQSGAYKDLGDGFVADDKLRKDK 660
           AKAAPDINPNLIEVSERVVKEKTKDPIPEIEWWDVPLLQSGAYKDLGDGFVADDKLRKDK
Sbjct: 601 AKAAPDINPNLIEVSERVVKEKTKDPIPEIEWWDVPLLQSGAYKDLGDGFVADDKLRKDK 660

Query: 661 ITIYVEHPRPIEPPAEPALPPPQPLKLTKKEQKKLRTQRRLAKEKDRQEMIRQGLIEPPK 720
           ITIYVEHPRPIEPPAEPALPPPQPLKLTKKEQKKLRTQRRLAKEKDRQEMIRQGLIEPPK
Sbjct: 661 ITIYVEHPRPIEPPAEPALPPPQPLKLTKKEQKKLRTQRRLAKEKDRQEMIRQGLIEPPK 720

Query: 721 PKVKMSNLMKVLGSEATQDPTKLEKEIRAAAAEREQAHIDRNIARKLTPAERREKKERKL 780
           PKVKMSNLMKVLGSEATQDPTKLEKEIRAAAAEREQAHIDRNIARKLTPAERREKKERKL
Sbjct: 721 PKVKMSNLMKVLGSEATQDPTKLEKEIRAAAAEREQAHIDRNIARKLTPAERREKKERKL 780

Query: 781 FDDSNSLETFVSVYKINDLSHPQARFKVDVNARENRLTGCAVICDGISVLVVEGGSKSIK 840
           FDDSNSLETFVSVYKINDLSHPQARFKVDVNARENRLTGCAVICDGISVLVVEGGSKSIK
Sbjct: 781 FDDSNSLETFVSVYKINDLSHPQARFKVDVNARENRLTGCAVICDGISVLVVEGGSKSIK 840

Query: 841 RYAKLMLRRINWAASVKEEEEEENDDKPLNKCSLVWQGSVAKSSFNRFSIQECMTEAAAR 900
           RYAKLMLRRINWAASVKEEEEEENDDKPLNKCSLVWQGSVAKSSFNRFSIQECMTEAAAR
Sbjct: 841 RYAKLMLRRINWAASVKEEEEEENDDKPLNKCSLVWQGSVAKSSFNRFSIQECMTEAAAR 900

Query: 901 KIFADAGVGHYWDFAINFSDDQL 924
           KIFADAGVGHYWDFAINFSDDQL
Sbjct: 901 KIFADAGVGHYWDFAINFSDDQL 923

[Close]

BLAST of CsaV3_5G006530 vs. ExPASy TrEMBL
Match: A0A5A7SXX5 (U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G00020 PE=4 SV=1)

HSP 1 Score: 1652.9 bits (4279), Expect = 0.0e+00
Identity = 894/923 (96.86%), Postives = 906/923 (98.16%), Query Frame = 0


Query: 1   MDRVSEKEKSSKRSREERDRDHKHRSRDTEDKHLSKDEKHRESDRHHRRRHHRSDRDSKR 60
           MDRVSEKEKSSKRSREERDRDHKHRSRDTEDKHLSKDEKHRESDRHHRRRHHRSDRDSKR
Sbjct: 1   MDRVSEKEKSSKRSREERDRDHKHRSRDTEDKHLSKDEKHRESDRHHRRRHHRSDRDSKR 60

Query: 61  ERSHEPREHKHRRDMSPDERESSQDRDFKRERSYELREERERSRDRDSSKREKSNEPRGL 120
           ERSHEPREHKHRRD SPDERE SQDRDFKRERSYELREERERSRDRDSSKREKSNEPRGL
Sbjct: 61  ERSHEPREHKHRRDRSPDEREGSQDRDFKRERSYELREERERSRDRDSSKREKSNEPRGL 120

Query: 121 REGSEERGKLREVRREESDNEHEREGSFEPIQNSVRPNKRKERGGSEDRFDGGEKRARAS 180
           REGSEERGKLREVRREESDNE EREGSFEPIQNSVR NKRKERGGSEDRFDGGEKRARAS
Sbjct: 121 REGSEERGKLREVRREESDNEREREGSFEPIQNSVRSNKRKERGGSEDRFDGGEKRARAS 180

Query: 181 EVGNEVNGAEMDEKKERRRFADGEKDEGANLSGRGRRDRKRFEDRGKEEDNGGNVDEKHG 240
           EVGNEVNGAEMDEKKERRRFADGEKD+GANLSGR RRDRKRFEDR KEEDNGGNVDEKH 
Sbjct: 181 EVGNEVNGAEMDEKKERRRFADGEKDDGANLSGRARRDRKRFEDRVKEEDNGGNVDEKHA 240

Query: 241 KVNEYKSKGDVGDGKVQFGGTTDEKRSLGNGSMVEPTDMPSASVPQNLLHPSHSLPIKVS 300
           KV EYKSKGDVGDGKVQFGGTTDEKRSLGNGSMVEPTD+PSASVPQNLLHPS SLPIKVS
Sbjct: 241 KVIEYKSKGDVGDGKVQFGGTTDEKRSLGNGSMVEPTDIPSASVPQNLLHPSPSLPIKVS 300

Query: 301 SISTTNENRGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQMQKELAEKL 360
           SISTTNEN+GVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQMQKELAEKL
Sbjct: 301 SISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQMQKELAEKL 360

Query: 361 KRIPLMKKVGGSSSANSSVVKLEEKAKPPSGILGPLSTTNDATTLSTGVVSSSSTLPSAA 420
           K+IPLMKKVGGSSSANSSVVKLEEKAKPPSG+LG LSTTNDATTLSTGVVSSSST PSAA
Sbjct: 361 KKIPLMKKVGGSSSANSSVVKLEEKAKPPSGVLGQLSTTNDATTLSTGVVSSSSTFPSAA 420

Query: 421 NALDGGINVPAGLTSIPHIEAVKRAQELAARMGFRQDPEFAPLINLFPGNVATDVAVPQK 480
           NALD GINVPAGLTSIPHIEAVKRAQELAARMGFRQDPEFAPLINLFPGN+ATDVAVPQK
Sbjct: 421 NALDVGINVPAGLTSIPHIEAVKRAQELAARMGFRQDPEFAPLINLFPGNIATDVAVPQK 480

Query: 481 PTKAPVLRLDALGREIDEQGNVVNITKPSNLSTLKVNINKQKKDAFQILKPELDVDPDSN 540
           PTKAPVLRLDALGREIDEQGNVVNITKPSNLSTLKVNINKQKKDAFQILKPELDVDPDSN
Sbjct: 481 PTKAPVLRLDALGREIDEQGNVVNITKPSNLSTLKVNINKQKKDAFQILKPELDVDPDSN 540

Query: 541 PHFDERMGINKTKLLRPKRMSFQFVEEGKWSKEAETLKLRSKFGEAQAKERREKQAQLAK 600
           PHFDERMGINKTKLLRPKRMSFQFVEEGKWSKEAETLKLRSKFGEAQAKER+EKQAQLAK
Sbjct: 541 PHFDERMGINKTKLLRPKRMSFQFVEEGKWSKEAETLKLRSKFGEAQAKERKEKQAQLAK 600

Query: 601 AKAAPDINPNLIEVSERVVKEKTKDPIPEIEWWDVPLLQSGAYKDLGDGFVADDKLRKDK 660
           AKAAPDINPNLIEVSERVVKEKTKDPIPEIEWWDVPLL S  Y+DLGDGFVAD+KLRKDK
Sbjct: 601 AKAAPDINPNLIEVSERVVKEKTKDPIPEIEWWDVPLLHSSTYEDLGDGFVADEKLRKDK 660

Query: 661 ITIYVEHPRPIEPPAEPALPPPQPLKLTKKEQKKLRTQRRLAKEKDRQEMIRQGLIEPPK 720
           ITIYVEHPRPIEPPAEPA PPPQPLKLTKKEQKKLRTQRRLAKEKDRQEMIRQGLIEPPK
Sbjct: 661 ITIYVEHPRPIEPPAEPAPPPPQPLKLTKKEQKKLRTQRRLAKEKDRQEMIRQGLIEPPK 720

Query: 721 PKVKMSNLMKVLGSEATQDPTKLEKEIRAAAAEREQAHIDRNIARKLTPAERREKKERKL 780
           PKVKMSNLMKVLGSEATQDPTKLEKEIRAAAAEREQAHIDRNIARKLTPAERREKKERKL
Sbjct: 721 PKVKMSNLMKVLGSEATQDPTKLEKEIRAAAAEREQAHIDRNIARKLTPAERREKKERKL 780

Query: 781 FDDSNSLETFVSVYKINDLSHPQARFKVDVNARENRLTGCAVICDGISVLVVEGGSKSIK 840
           FDDSNSLETFVSVYKINDLSHPQARFKVDVNARENRLTGCAVICDGISVLVVEGGSKSIK
Sbjct: 781 FDDSNSLETFVSVYKINDLSHPQARFKVDVNARENRLTGCAVICDGISVLVVEGGSKSIK 840

Query: 841 RYAKLMLRRINWAASVKEEEEEENDDKPLNKCSLVWQGSVAKSSFNRFSIQECMTEAAAR 900
           RYAKLMLRRINWAASVKEEEEEE DDKP+NKCSLVWQGSVAKSSFNRFSIQECMTEAAAR
Sbjct: 841 RYAKLMLRRINWAASVKEEEEEETDDKPVNKCSLVWQGSVAKSSFNRFSIQECMTEAAAR 900

Query: 901 KIFADAGVGHYWDFAINFSDDQL 924
           KIFADAGVGHYWDFA+NFSDDQ+
Sbjct: 901 KIFADAGVGHYWDFAVNFSDDQI 923

[Close]

BLAST of CsaV3_5G006530 vs. ExPASy TrEMBL
Match: A0A1S3CF39 (U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo OX=3656 GN=LOC103500170 PE=4 SV=1)

HSP 1 Score: 1652.9 bits (4279), Expect = 0.0e+00
Identity = 894/923 (96.86%), Postives = 906/923 (98.16%), Query Frame = 0


Query: 1   MDRVSEKEKSSKRSREERDRDHKHRSRDTEDKHLSKDEKHRESDRHHRRRHHRSDRDSKR 60
           MDRVSEKEKSSKRSREERDRDHKHRSRDTEDKHLSKDEKHRESDRHHRRRHHRSDRDSKR
Sbjct: 1   MDRVSEKEKSSKRSREERDRDHKHRSRDTEDKHLSKDEKHRESDRHHRRRHHRSDRDSKR 60

Query: 61  ERSHEPREHKHRRDMSPDERESSQDRDFKRERSYELREERERSRDRDSSKREKSNEPRGL 120
           ERSHEPREHKHRRD SPDERE SQDRDFKRERSYELREERERSRDRDSSKREKSNEPRGL
Sbjct: 61  ERSHEPREHKHRRDRSPDEREGSQDRDFKRERSYELREERERSRDRDSSKREKSNEPRGL 120

Query: 121 REGSEERGKLREVRREESDNEHEREGSFEPIQNSVRPNKRKERGGSEDRFDGGEKRARAS 180
           REGSEERGKLREVRREESDNE EREGSFEPIQNSVR NKRKERGGSEDRFDGGEKRARAS
Sbjct: 121 REGSEERGKLREVRREESDNEREREGSFEPIQNSVRSNKRKERGGSEDRFDGGEKRARAS 180

Query: 181 EVGNEVNGAEMDEKKERRRFADGEKDEGANLSGRGRRDRKRFEDRGKEEDNGGNVDEKHG 240
           EVGNEVNGAEMDEKKERRRFADGEKD+GANLSGR RRDRKRFEDR KEEDNGGNVDEKH 
Sbjct: 181 EVGNEVNGAEMDEKKERRRFADGEKDDGANLSGRARRDRKRFEDRVKEEDNGGNVDEKHA 240

Query: 241 KVNEYKSKGDVGDGKVQFGGTTDEKRSLGNGSMVEPTDMPSASVPQNLLHPSHSLPIKVS 300
           KV EYKSKGDVGDGKVQFGGTTDEKRSLGNGSMVEPTD+PSASVPQNLLHPS SLPIKVS
Sbjct: 241 KVIEYKSKGDVGDGKVQFGGTTDEKRSLGNGSMVEPTDIPSASVPQNLLHPSPSLPIKVS 300

Query: 301 SISTTNENRGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQMQKELAEKL 360
           SISTTNEN+GVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQMQKELAEKL
Sbjct: 301 SISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQMQKELAEKL 360

Query: 361 KRIPLMKKVGGSSSANSSVVKLEEKAKPPSGILGPLSTTNDATTLSTGVVSSSSTLPSAA 420
           K+IPLMKKVGGSSSANSSVVKLEEKAKPPSG+LG LSTTNDATTLSTGVVSSSST PSAA
Sbjct: 361 KKIPLMKKVGGSSSANSSVVKLEEKAKPPSGVLGQLSTTNDATTLSTGVVSSSSTFPSAA 420

Query: 421 NALDGGINVPAGLTSIPHIEAVKRAQELAARMGFRQDPEFAPLINLFPGNVATDVAVPQK 480
           NALD GINVPAGLTSIPHIEAVKRAQELAARMGFRQDPEFAPLINLFPGN+ATDVAVPQK
Sbjct: 421 NALDVGINVPAGLTSIPHIEAVKRAQELAARMGFRQDPEFAPLINLFPGNIATDVAVPQK 480

Query: 481 PTKAPVLRLDALGREIDEQGNVVNITKPSNLSTLKVNINKQKKDAFQILKPELDVDPDSN 540
           PTKAPVLRLDALGREIDEQGNVVNITKPSNLSTLKVNINKQKKDAFQILKPELDVDPDSN
Sbjct: 481 PTKAPVLRLDALGREIDEQGNVVNITKPSNLSTLKVNINKQKKDAFQILKPELDVDPDSN 540

Query: 541 PHFDERMGINKTKLLRPKRMSFQFVEEGKWSKEAETLKLRSKFGEAQAKERREKQAQLAK 600
           PHFDERMGINKTKLLRPKRMSFQFVEEGKWSKEAETLKLRSKFGEAQAKER+EKQAQLAK
Sbjct: 541 PHFDERMGINKTKLLRPKRMSFQFVEEGKWSKEAETLKLRSKFGEAQAKERKEKQAQLAK 600

Query: 601 AKAAPDINPNLIEVSERVVKEKTKDPIPEIEWWDVPLLQSGAYKDLGDGFVADDKLRKDK 660
           AKAAPDINPNLIEVSERVVKEKTKDPIPEIEWWDVPLL S  Y+DLGDGFVAD+KLRKDK
Sbjct: 601 AKAAPDINPNLIEVSERVVKEKTKDPIPEIEWWDVPLLHSSTYEDLGDGFVADEKLRKDK 660

Query: 661 ITIYVEHPRPIEPPAEPALPPPQPLKLTKKEQKKLRTQRRLAKEKDRQEMIRQGLIEPPK 720
           ITIYVEHPRPIEPPAEPA PPPQPLKLTKKEQKKLRTQRRLAKEKDRQEMIRQGLIEPPK
Sbjct: 661 ITIYVEHPRPIEPPAEPAPPPPQPLKLTKKEQKKLRTQRRLAKEKDRQEMIRQGLIEPPK 720

Query: 721 PKVKMSNLMKVLGSEATQDPTKLEKEIRAAAAEREQAHIDRNIARKLTPAERREKKERKL 780
           PKVKMSNLMKVLGSEATQDPTKLEKEIRAAAAEREQAHIDRNIARKLTPAERREKKERKL
Sbjct: 721 PKVKMSNLMKVLGSEATQDPTKLEKEIRAAAAEREQAHIDRNIARKLTPAERREKKERKL 780

Query: 781 FDDSNSLETFVSVYKINDLSHPQARFKVDVNARENRLTGCAVICDGISVLVVEGGSKSIK 840
           FDDSNSLETFVSVYKINDLSHPQARFKVDVNARENRLTGCAVICDGISVLVVEGGSKSIK
Sbjct: 781 FDDSNSLETFVSVYKINDLSHPQARFKVDVNARENRLTGCAVICDGISVLVVEGGSKSIK 840

Query: 841 RYAKLMLRRINWAASVKEEEEEENDDKPLNKCSLVWQGSVAKSSFNRFSIQECMTEAAAR 900
           RYAKLMLRRINWAASVKEEEEEE DDKP+NKCSLVWQGSVAKSSFNRFSIQECMTEAAAR
Sbjct: 841 RYAKLMLRRINWAASVKEEEEEETDDKPVNKCSLVWQGSVAKSSFNRFSIQECMTEAAAR 900

Query: 901 KIFADAGVGHYWDFAINFSDDQL 924
           KIFADAGVGHYWDFA+NFSDDQ+
Sbjct: 901 KIFADAGVGHYWDFAVNFSDDQI 923

[Close]

BLAST of CsaV3_5G006530 vs. ExPASy TrEMBL
Match: A0A6J1CB57 (protein RDM16 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111010059 PE=4 SV=1)

HSP 1 Score: 1503.8 bits (3892), Expect = 0.0e+00
Identity = 823/934 (88.12%), Postives = 868/934 (92.93%), Query Frame = 0


Query: 1   MDRVSEKEKSSKRSREERDRDHKHRSRDTEDKHLSKDEKHRESDRHHRRRHHRSDRDSKR 60
           MDRVSEKEKSSKRSR+ERDRD KHRSRD ++KH SKDEKHRESD HHRRRHHRSDRDSKR
Sbjct: 1   MDRVSEKEKSSKRSRDERDRDQKHRSRDADEKHSSKDEKHRESDHHHRRRHHRSDRDSKR 60

Query: 61  ERSHEPREHKHRRDMSPDERESSQDRDFKRERSYELREERERSRDRDSSKREKSNEPRGL 120
           ERSHEP +HKHRRD SPDE ESSQD DFKRERSY+LR+ERERSRDRDSSKRE+SNEPR  
Sbjct: 61  ERSHEPLDHKHRRDRSPDEHESSQDHDFKRERSYDLRDERERSRDRDSSKRERSNEPRVE 120

Query: 121 REGSEERGKLREVRREESDNEHEREGSFEPIQNSVRPNKRKERGGSEDRFDGGEKRARAS 180
           REGS+ERGKLRE RRE+SD+E EREGSFEPIQN+VR NKRK+RGGSEDRFDGGEKRARAS
Sbjct: 121 REGSKERGKLREARREQSDDECEREGSFEPIQNTVRSNKRKDRGGSEDRFDGGEKRARAS 180

Query: 181 ---------EVGNEVNGAEMDEKKERRRFADGEKDEGANLSGRGRRDRKRFEDRGKEEDN 240
                    E G EVNGAEMDEKKERRRFADGEKD+ ANLSGRGRR+RKRFED   EEDN
Sbjct: 181 EDGKDLRRIEDGKEVNGAEMDEKKERRRFADGEKDDEANLSGRGRRERKRFEDWVNEEDN 240

Query: 241 GGNVDEKHGKVNEYKSKGDVGDGKVQFGGTTDEKRSLGNGSMVEPTDMPSASVPQNLLHP 300
           GGNVDEKH  VN++KSKG+VGDGK+Q GGTTD   SLGNGS VEP DM SASVPQ+L+HP
Sbjct: 241 GGNVDEKHANVNKHKSKGNVGDGKIQIGGTTDVS-SLGNGSTVEPIDMSSASVPQSLVHP 300

Query: 301 SHSLPIKVSSISTTNENRGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQ 360
           SHS+PIKVSSISTTNEN+GVSITRSHEVHGKSSTDG SSTAGKSGNLSLDALAKAKKALQ
Sbjct: 301 SHSIPIKVSSISTTNENKGVSITRSHEVHGKSSTDGPSSTAGKSGNLSLDALAKAKKALQ 360

Query: 361 MQKELAEKLKRIPLMKKVGGSSSANSSVVKLEEKAKPPSGILGPLSTTNDATTLSTGVVS 420
           MQKELAEKLK+IPLMKK GGSSSA+SSVVKLE+K+KP  G+LGP  TTN  TT+S GV S
Sbjct: 361 MQKELAEKLKKIPLMKKDGGSSSASSSVVKLEDKSKPAGGVLGPSPTTNIGTTISAGVAS 420

Query: 421 SSSTLPSAANALDGGINVPAGLTSIPHIEAVKRAQELAARMGFRQDPEFAPLINLFPGNV 480
           SSSTLP+A N   GGINVPAGLTSIPH EAVKRAQELAARMGFRQDPEFAPLINLFPGN+
Sbjct: 421 SSSTLPAATNTHGGGINVPAGLTSIPHFEAVKRAQELAARMGFRQDPEFAPLINLFPGNI 480

Query: 481 ATDVAVPQKPTKAPVLRLDALGREIDEQGNVVNITKPSNLSTLKVNINKQKKDAFQILKP 540
           ATDVAVPQKP KAPVLRLDALGREIDEQGNVVNITKPSNLSTLKVNINKQKKDAFQILKP
Sbjct: 481 ATDVAVPQKPVKAPVLRLDALGREIDEQGNVVNITKPSNLSTLKVNINKQKKDAFQILKP 540

Query: 541 ELDVDPDSNPHFDERMGINKTKLLRPKRMSFQFVEEGKWSKEAETLKLRSKFGEAQAKER 600
           EL+VDP+SNPHFDERMGINKTKLLRPKRM+FQFVEEGKWSKEAET+KLRSKFGEAQAKER
Sbjct: 541 ELEVDPESNPHFDERMGINKTKLLRPKRMNFQFVEEGKWSKEAETIKLRSKFGEAQAKER 600

Query: 601 REKQAQLAKAKAAPDINPNLIEVSERV-VKEKTKDPIPEIEWWDVPLLQSGAYKDLGDGF 660
           REKQAQLAKAKAAPDINPNLIEVSERV VKEKTK+PIPEIEWWDV LL SG Y D+GDGF
Sbjct: 601 REKQAQLAKAKAAPDINPNLIEVSERVIVKEKTKEPIPEIEWWDVSLLHSGTYDDVGDGF 660

Query: 661 VADDKLRKDKITIYVEHPRPIEPPAEPALPPPQPLKLTKKEQKKLRTQRRLAKEKDRQEM 720
           VA+DK+RKDKITIYVEHPRPIEPP EPA PPPQPLKLTKKEQKKLRTQRRLAKEKDRQEM
Sbjct: 661 VANDKIRKDKITIYVEHPRPIEPPVEPAPPPPQPLKLTKKEQKKLRTQRRLAKEKDRQEM 720

Query: 721 IRQGLIEPPKPKVKMSNLMKVLGSEATQDPTKLEKEIRAAAAEREQAHIDRNIARKLTPA 780
           IRQGLIEPPKPKVKMSNLMKVLGSEATQDPTKLEKEIRAAAAEREQAHIDRNIARKLTPA
Sbjct: 721 IRQGLIEPPKPKVKMSNLMKVLGSEATQDPTKLEKEIRAAAAEREQAHIDRNIARKLTPA 780

Query: 781 ERREKKERKLFDDSNSLETFVSVYKINDLSHPQARFKVDVNARENRLTGCAVICDGISVL 840
           ERREKKERKLFDD+NSLE FVSVYKI DLSHPQARFKVDVNARENRLTGCAVICDGISVL
Sbjct: 781 ERREKKERKLFDDANSLENFVSVYKIYDLSHPQARFKVDVNARENRLTGCAVICDGISVL 840

Query: 841 VVEGGSKSIKRYAKLMLRRINWAASVKEEEE-EENDDKPLNKCSLVWQGSVAKSSFNRFS 900
           VVEGGSKSIKRY KLMLRRINWAASVKEEEE +E+DDKP+NKCSLVWQGSVAKSSFN+F 
Sbjct: 841 VVEGGSKSIKRYGKLMLRRINWAASVKEEEEADESDDKPVNKCSLVWQGSVAKSSFNKFF 900

Query: 901 IQECMTEAAARKIFADAGVGHYWDFAINFSDDQL 924
           IQECMTEAAARKIFADAGVGHYWD A+NFSDDQ+
Sbjct: 901 IQECMTEAAARKIFADAGVGHYWDLAVNFSDDQI 933

[Close]

BLAST of CsaV3_5G006530 vs. ExPASy TrEMBL
Match: A0A6J1CBF9 (protein RDM16 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111010059 PE=4 SV=1)

HSP 1 Score: 1494.9 bits (3869), Expect = 0.0e+00
Identity = 819/934 (87.69%), Postives = 864/934 (92.51%), Query Frame = 0


Query: 1   MDRVSEKEKSSKRSREERDRDHKHRSRDTEDKHLSKDEKHRESDRHHRRRHHRSDRDSKR 60
           MDRVSEKEKSSKRSR+ERDRD KHRSRD ++KH SKDEKHRESD HHRRRHHRSDRDSKR
Sbjct: 1   MDRVSEKEKSSKRSRDERDRDQKHRSRDADEKHSSKDEKHRESDHHHRRRHHRSDRDSKR 60

Query: 61  ERSHEPREHKHRRDMSPDERESSQDRDFKRERSYELREERERSRDRDSSKREKSNEPRGL 120
           ERSHEP +HKHRRD SPDE ESSQD DFKRERSY+LR+ERERSRDRDSSKRE+SNEPR  
Sbjct: 61  ERSHEPLDHKHRRDRSPDEHESSQDHDFKRERSYDLRDERERSRDRDSSKRERSNEPRVE 120

Query: 121 REGSEERGKLREVRREESDNEHEREGSFEPIQNSVRPNKRKERGGSEDRFDGGEKRARAS 180
           REGS+ERGKLRE RRE+SD+E EREGSFEPIQN+VR NKRK+RGGSEDRFDGGEKRARAS
Sbjct: 121 REGSKERGKLREARREQSDDECEREGSFEPIQNTVRSNKRKDRGGSEDRFDGGEKRARAS 180

Query: 181 ---------EVGNEVNGAEMDEKKERRRFADGEKDEGANLSGRGRRDRKRFEDRGKEEDN 240
                    E G EVNGAEMDEKKERRRFADGEKD+ ANLSGRGRR+RKRFED   EEDN
Sbjct: 181 EDGKDLRRIEDGKEVNGAEMDEKKERRRFADGEKDDEANLSGRGRRERKRFEDWVNEEDN 240

Query: 241 GGNVDEKHGKVNEYKSKGDVGDGKVQFGGTTDEKRSLGNGSMVEPTDMPSASVPQNLLHP 300
           GGNVDEKH  VN++KSKG+VGDGK+Q GGTTD       GS VEP DM SASVPQ+L+HP
Sbjct: 241 GGNVDEKHANVNKHKSKGNVGDGKIQIGGTTD-------GSTVEPIDMSSASVPQSLVHP 300

Query: 301 SHSLPIKVSSISTTNENRGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQ 360
           SHS+PIKVSSISTTNEN+GVSITRSHEVHGKSSTDG SSTAGKSGNLSLDALAKAKKALQ
Sbjct: 301 SHSIPIKVSSISTTNENKGVSITRSHEVHGKSSTDGPSSTAGKSGNLSLDALAKAKKALQ 360

Query: 361 MQKELAEKLKRIPLMKKVGGSSSANSSVVKLEEKAKPPSGILGPLSTTNDATTLSTGVVS 420
           MQKELAEKLK+IPLMKK GGSSSA+SSVVKLE+K+KP  G+LGP  TTN  TT+S GV S
Sbjct: 361 MQKELAEKLKKIPLMKKDGGSSSASSSVVKLEDKSKPAGGVLGPSPTTNIGTTISAGVAS 420

Query: 421 SSSTLPSAANALDGGINVPAGLTSIPHIEAVKRAQELAARMGFRQDPEFAPLINLFPGNV 480
           SSSTLP+A N   GGINVPAGLTSIPH EAVKRAQELAARMGFRQDPEFAPLINLFPGN+
Sbjct: 421 SSSTLPAATNTHGGGINVPAGLTSIPHFEAVKRAQELAARMGFRQDPEFAPLINLFPGNI 480

Query: 481 ATDVAVPQKPTKAPVLRLDALGREIDEQGNVVNITKPSNLSTLKVNINKQKKDAFQILKP 540
           ATDVAVPQKP KAPVLRLDALGREIDEQGNVVNITKPSNLSTLKVNINKQKKDAFQILKP
Sbjct: 481 ATDVAVPQKPVKAPVLRLDALGREIDEQGNVVNITKPSNLSTLKVNINKQKKDAFQILKP 540

Query: 541 ELDVDPDSNPHFDERMGINKTKLLRPKRMSFQFVEEGKWSKEAETLKLRSKFGEAQAKER 600
           EL+VDP+SNPHFDERMGINKTKLLRPKRM+FQFVEEGKWSKEAET+KLRSKFGEAQAKER
Sbjct: 541 ELEVDPESNPHFDERMGINKTKLLRPKRMNFQFVEEGKWSKEAETIKLRSKFGEAQAKER 600

Query: 601 REKQAQLAKAKAAPDINPNLIEVSERV-VKEKTKDPIPEIEWWDVPLLQSGAYKDLGDGF 660
           REKQAQLAKAKAAPDINPNLIEVSERV VKEKTK+PIPEIEWWDV LL SG Y D+GDGF
Sbjct: 601 REKQAQLAKAKAAPDINPNLIEVSERVIVKEKTKEPIPEIEWWDVSLLHSGTYDDVGDGF 660

Query: 661 VADDKLRKDKITIYVEHPRPIEPPAEPALPPPQPLKLTKKEQKKLRTQRRLAKEKDRQEM 720
           VA+DK+RKDKITIYVEHPRPIEPP EPA PPPQPLKLTKKEQKKLRTQRRLAKEKDRQEM
Sbjct: 661 VANDKIRKDKITIYVEHPRPIEPPVEPAPPPPQPLKLTKKEQKKLRTQRRLAKEKDRQEM 720

Query: 721 IRQGLIEPPKPKVKMSNLMKVLGSEATQDPTKLEKEIRAAAAEREQAHIDRNIARKLTPA 780
           IRQGLIEPPKPKVKMSNLMKVLGSEATQDPTKLEKEIRAAAAEREQAHIDRNIARKLTPA
Sbjct: 721 IRQGLIEPPKPKVKMSNLMKVLGSEATQDPTKLEKEIRAAAAEREQAHIDRNIARKLTPA 780

Query: 781 ERREKKERKLFDDSNSLETFVSVYKINDLSHPQARFKVDVNARENRLTGCAVICDGISVL 840
           ERREKKERKLFDD+NSLE FVSVYKI DLSHPQARFKVDVNARENRLTGCAVICDGISVL
Sbjct: 781 ERREKKERKLFDDANSLENFVSVYKIYDLSHPQARFKVDVNARENRLTGCAVICDGISVL 840

Query: 841 VVEGGSKSIKRYAKLMLRRINWAASVKEEEE-EENDDKPLNKCSLVWQGSVAKSSFNRFS 900
           VVEGGSKSIKRY KLMLRRINWAASVKEEEE +E+DDKP+NKCSLVWQGSVAKSSFN+F 
Sbjct: 841 VVEGGSKSIKRYGKLMLRRINWAASVKEEEEADESDDKPVNKCSLVWQGSVAKSSFNKFF 900

Query: 901 IQECMTEAAARKIFADAGVGHYWDFAINFSDDQL 924
           IQECMTEAAARKIFADAGVGHYWD A+NFSDDQ+
Sbjct: 901 IQECMTEAAARKIFADAGVGHYWDLAVNFSDDQI 927

[Close]

BLAST of CsaV3_5G006530 vs. TAIR 10
Match: AT1G28060.1 (Pre-mRNA-splicing factor 3 )

HSP 1 Score: 738.0 bits (1904), Expect = 9.1e-213
Identity = 476/854 (55.74%), Postives = 585/854 (68.50%), Query Frame = 0


Query: 80  RESSQDRDFKRERSYELREERERSRDRD-SSKREKSNEPRGLREG--SEERGKLREVRRE 139
           R    DRD      +  + E  R RDRD  SKR  S+  R  R G   +ER + ++ RR 
Sbjct: 8   RSHRDDRDRDSSPDHSPQREGGRRRDRDVDSKRRDSDHYRSSRRGDREDERDRTKD-RRG 67

Query: 140 ESDNEHEREGSFEPIQNSVRPNKRKERGGSEDRFDGGEKRARASEVGNEVNGAEMDEKKE 199
            S    EREGS    ++  + +  +   GS+++    +++ R  E     NGA   + K+
Sbjct: 68  RSVERGEREGS----RDREKHHHERSHEGSKEKESRSKRKDREEE-----NGAR--DGKK 127

Query: 200 RRRFADGEKDEGANLSGRGRRDRKRFEDRGKEEDNGGNVDEKHGKVNEYKSKGDVGDGKV 259
           + RFAD          G G R R RFED   E      V+ K  +V+E     +   G V
Sbjct: 128 KSRFAD----------GNGER-RSRFEDVAIE------VENKDAQVSEGSGATNPTSG-V 187

Query: 260 QFGGTTDEKRSLGNGSMVEPTDMPSASVPQNL-LHPSHSLPIKVSSISTTNENRGVSITR 319
             G +T                   +S+P      PS +L  KVSSISTT+EN+  S+ R
Sbjct: 188 TMGAST------------------YSSIPSEASAAPSQTLLTKVSSISTTDENK-ASVVR 247

Query: 320 SHEVHGKSSTDGTS-STAGK-SGNLSLDA---LAKAKKALQMQKELAEKLKRIPLMKKVG 379
           SHEV GKSSTDG   STAGK S NL LD+    AKA+KALQ+QK LA++LK +PL+KK  
Sbjct: 248 SHEVPGKSSTDGRPLSTAGKSSANLPLDSSALAAKARKALQLQKGLADRLKNLPLLKKAT 307

Query: 380 GSSSANSSVVKLEEKAKPPSGILGPLSTTNDATTLSTGVVSSSSTLPSAANALDGGINVP 439
             +S  S   ++            P STT  A  +STG  S +STLP             
Sbjct: 308 KPTSEGSPHTRV------------PPSTTTPA--VSTG-TSFASTLPHTG---------L 367

Query: 440 AGLTSIPHIEAVKRAQELAARMGFRQDPEFAPLINLFPGNVATDVAVPQKPTKAPVLRLD 499
           AG  SI +IEAVKRAQELAA MGF QD EFAP+INLFPG   +D+ V Q+P K PVLR+D
Sbjct: 368 AGFGSIANIEAVKRAQELAANMGFHQDREFAPVINLFPGQAPSDMTVAQRPEKPPVLRVD 427

Query: 500 ALGREIDEQGNVVNITKPSNLSTLKVNINKQKKDAFQILKPELDVDPDSNPHFDERMGIN 559
           ALGREIDE GNV+++TKPSNLSTLKVNINK+KKDAFQILKP+L+ D   NP+FD RMGI+
Sbjct: 428 ALGREIDEHGNVISVTKPSNLSTLKVNINKKKKDAFQILKPQLEADLKENPYFDTRMGID 487

Query: 560 KTKLLRPKRMSFQFVEEGKWSKEAETLKLRSKFGEAQAKERREKQAQLAKAKAAPDINPN 619
           + K+LRPKRMSFQFVEEGKW+++AE LK +S FGEA+AKE + KQAQLAKA    DINPN
Sbjct: 488 EKKILRPKRMSFQFVEEGKWTRDAENLKFKSHFGEAKAKELKVKQAQLAKAN--DDINPN 547

Query: 620 LIEVSERVV-KEKTKDPIPEIEWWDVPLLQSGAYKDLGDGFVADDKLRKDKITIYVEHPR 679
           LIEVSERV  KEK K+PIP++EWWD  +L +G Y ++ DG + +  L+ +K+T Y+EHPR
Sbjct: 548 LIEVSERVPRKEKPKEPIPDVEWWDANVLTNGEYGEITDGTITESHLKIEKLTHYIEHPR 607

Query: 680 PIEPPAEPALPPPQPLKLTKKEQKKLRTQRRLAKEKDRQEMIRQGLIEPPKPKVKMSNLM 739
           PIEPPAE A PPPQPLKLTKKEQKKLRTQRRLAKEK++QEMIRQGL+EPPK KVKMSNLM
Sbjct: 608 PIEPPAEAAPPPPQPLKLTKKEQKKLRTQRRLAKEKEKQEMIRQGLLEPPKAKVKMSNLM 667

Query: 740 KVLGSEATQDPTKLEKEIRAAAAEREQAHIDRNIARKLTPAERREKKERKLFDDSNSLET 799
           KVLGSEATQDPTKLEKEIR AAAEREQAH DRN ARKLTPAE+REKKERKLFDD  ++ET
Sbjct: 668 KVLGSEATQDPTKLEKEIRTAAAEREQAHTDRNAARKLTPAEKREKKERKLFDDPTTVET 727

Query: 800 FVSVYKINDLSHPQARFKVDVNARENRLTGCAVICDGISVLVVEGGSKSIKRYAKLMLRR 859
            VSVYKI  LSHP+ RFKV++NARENRLTGC+V+ D +SV+VVEG SK+IKRY KLM++R
Sbjct: 728 IVSVYKIKKLSHPKTRFKVEMNARENRLTGCSVMTDEMSVVVVEGKSKAIKRYGKLMMKR 786

Query: 860 INWAASVKEE--EEEENDDKPLNKCSLVWQGSVAKSSFNRFSIQECMTEAAARKIFADAG 919
           INW  + ++E  E+EE +    NKC LVWQGS+ K SF+RF + EC+TE+ A+K+F DAG
Sbjct: 788 INWEEAERKEGNEDEEEEVNGGNKCWLVWQGSIGKPSFHRFHVHECVTESTAKKVFMDAG 786

Query: 920 VGHYWDFAINFSDD 922
           V HYWD A+N+SDD
Sbjct: 848 VVHYWDLAVNYSDD 786

[Close]

BLAST of CsaV3_5G006530 vs. TAIR 10
Match: AT3G55930.1 (Pre-mRNA-splicing factor 3 )

HSP 1 Score: 348.6 bits (893), Expect = 1.5e-95
Identity = 213/448 (47.54%), Postives = 264/448 (58.93%), Query Frame = 0


Query: 480 KPTKAPVLRLDALGREIDEQGNVVNITKPSNLSTLKVNINKQKKDAFQILKPELDVDPDS 539
           K TK  VLR+DALGREIDE GNV+++TKP N STL VNI                   D+
Sbjct: 91  KQTKGFVLRVDALGREIDEHGNVISVTKPINHSTLMVNIR------------------DN 150

Query: 540 NPHFDERMGINKTKLLRPKRMSFQFVEEGKWSKEAETLKLRSKFGEAQAKERREKQAQLA 599
            PH                                                      +L+
Sbjct: 151 VPH-----------------------------------------------------RKLS 210

Query: 600 KAKAAPDINPNLIEVSERVVKEKTKDPIPEIEWWDVPLLQSGAYKDLG-------DGFVA 659
           K  +                           EWWD  +L      +L           + 
Sbjct: 211 KILS---------------------------EWWDAKILTDDTINELSCDPNILIMDTIT 270

Query: 660 DDKLRKDKITIYVEHPRPIEPPAEPALPPPQPLKLTKKEQKKLRTQRRLAKEKDRQEMIR 719
           ++ L       ++EHP PIEPPAE A PPPQPLK+TK+E+KKLRT RR+AKE +++EMI 
Sbjct: 271 ENHLNMKVFNCHIEHPFPIEPPAEAASPPPQPLKMTKEERKKLRTLRRVAKEMEKREMIS 330

Query: 720 QGLIEPPKPKVKMSNLMKVLGSEATQDPTKLEKEIRAAAAEREQAHIDRNIARKLTPAER 779
           QG +EP K KVKMSNLMKV  SEATQ+PTKLEKEIR  AAEREQAH+DRN+ARKLTPAE+
Sbjct: 331 QGRVEPQKSKVKMSNLMKVRASEATQNPTKLEKEIRTEAAEREQAHMDRNVARKLTPAEK 390

Query: 780 REKKERKLFDDSNS-LETFVSVYKIN-DLSHPQARFKVDVNARENRLTGCAVICDGISVL 839
           REKKERKLF D  + +ET VSVYKIN  LS P+ RFKV +NA++N LTG +V+ DG+SV+
Sbjct: 391 REKKERKLFGDPTTVVETIVSVYKINKKLSDPKTRFKVRMNAKQNILTGFSVMMDGMSVV 437

Query: 840 VVEGGSKSIKRYAKLMLRRINWAASVKEEEEEENDDKPLNKCSLVWQGSVAKSSFNRFSI 899
           VVEG  K+I RY KLML+RINW  + K+E+EEEN     NKC LVWQGSV K SF+RF +
Sbjct: 451 VVEGKRKAINRYEKLMLKRINWEEAEKKEDEEENGG---NKCCLVWQGSVEKPSFHRFHV 437

Query: 900 QECMTEAAARKIFADAGVGHYWDFAINF 919
           QEC+T++ A+K+F DAGV HYWD A+N+
Sbjct: 511 QECLTKSDAKKVFNDAGVAHYWDLALNY 437

[Close]

BLAST of CsaV3_5G006530 vs. TAIR 10
Match: AT3G56790.1 (RNA splicing factor-related )

HSP 1 Score: 78.2 bits (191), Expect = 3.9e-14
Identity = 48/79 (60.76%), Postives = 60/79 (75.95%), Query Frame = 0


Query: 662 TIYVEHPRPIEPPAEPALPPPQPLKLTKKEQKKLRTQRRLAKEKDRQEMIRQGLIEPPKP 721
           T+ V + +  +   +  L PPQP KLTKKE+KKL+T RR+AKEK++Q+MIRQ L EP K 
Sbjct: 125 TLMVNNNKHKKDVFQNILKPPQPFKLTKKEEKKLQTLRRVAKEKEKQKMIRQALFEPQKS 184

Query: 722 KVKMSNLMKVLGSE-ATQD 740
           KVK+SNLMKVL SE ATQD
Sbjct: 185 KVKLSNLMKVLASELATQD 203

The following BLAST results are available for this feature:

BLAST of CsaV3_5G006530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143591.1	0.0e+00	100.00	protein RDM16 isoform X1 [Cucumis sativus] >KGN50493.1 hypothetical protein Csa_...	[more]
XP_008461606.1	0.0e+00	96.86	PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo] >KAA0034019...	[more]
XP_038893249.1	0.0e+00	93.28	protein RDM16 isoform X1 [Benincasa hispida]	[more]
XP_022139030.1	0.0e+00	88.12	protein RDM16 isoform X1 [Momordica charantia]	[more]
XP_022139031.1	0.0e+00	87.69	protein RDM16 isoform X2 [Momordica charantia]	[more]

BLAST of CsaV3_5G006530 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C7E7	1.3e-211	55.74	Protein RDM16 OS=Arabidopsis thaliana OX=3702 GN=RDM16 PE=2 SV=1	[more]
Q5ZJ85	2.0e-71	33.65	U4/U6 small nuclear ribonucleoprotein Prp3 OS=Gallus gallus OX=9031 GN=PRPF3 PE=...	[more]
Q922U1	6.4e-70	34.02	U4/U6 small nuclear ribonucleoprotein Prp3 OS=Mus musculus OX=10090 GN=Prpf3 PE=...	[more]
Q2KIA6	8.3e-70	33.81	U4/U6 small nuclear ribonucleoprotein Prp3 OS=Bos taurus OX=9913 GN=PRPF3 PE=2 S...	[more]
O43395	1.1e-69	33.44	U4/U6 small nuclear ribonucleoprotein Prp3 OS=Homo sapiens OX=9606 GN=PRPF3 PE=1...	[more]

BLAST of CsaV3_5G006530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLQ4	0.0e+00	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G177130 PE=4 SV=1	[more]
A0A5A7SXX5	0.0e+00	96.86	U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3CF39	0.0e+00	96.86	U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo OX=3656 GN=LOC1035001...	[more]
A0A6J1CB57	0.0e+00	88.12	protein RDM16 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111010059 PE=4 SV=...	[more]
A0A6J1CBF9	0.0e+00	87.69	protein RDM16 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111010059 PE=4 SV=...	[more]

BLAST of CsaV3_5G006530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G28060.1	9.1e-213	55.74	Pre-mRNA-splicing factor 3	[more]
AT3G55930.1	1.5e-95	47.54	Pre-mRNA-splicing factor 3	[more]
AT3G56790.1	3.9e-14	60.76	RNA splicing factor-related	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 685..707
None	No IPR available	COILS	Coil	Coil	coord: 340..363
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 263..292
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 671..707
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..292
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..251
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 305..336
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 687..707
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42
None	No IPR available	PANTHER	PTHR14212:SF2	SUBFAMILY NOT NAMED	coord: 70..923
IPR013881	Pre-mRNA-splicing factor 3	PFAM	PF08572	PRP3	coord: 540..768 e-value: 1.3E-62 score: 211.4
IPR010541	Domain of unknown function DUF1115	PFAM	PF06544	DUF1115	coord: 793..915 e-value: 1.9E-40 score: 138.4
IPR027104	U4/U6 small nuclear ribonucleoprotein Prp3	PANTHER	PTHR14212	U4/U6-ASSOCIATED RNA SPLICING FACTOR-RELATED	coord: 70..923

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G006530.1	CsaV3_5G006530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex