|
|
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGGAATCTATTGCTGAAGTTCAGTCACCGAACTGGGAATCTTTAGACCACTATTGGAAGAGGGAAAATCTGCAGGCCTTCTGCAATAGGTCCTCTTTTATTAGCTCTCTAATTTTGCTGAATTGAAACTTATGCATTCATTTGAAGTCCATATTATCCAGTTTGGTTTGTAGAGCATGCAACAAGCTGACAATGCTGCTACTTTAGTCCTGCGTAGTTCAGCGAAAATGGCGAGCAGGCATTGCTTGAACACTACTTCGGATATGTGCAACAGTTCATGGAAAATGTTATGCAGATGCTTGCTCTTTATCAATGTCTTTCCATGA mRNA sequence ATGGAATCTATTGCTGAAGTTCAGTCACCGAACTGGGAATCTTTAGACCACTATTGGAAGAGGGAAAATCTGCAGGCCTTCTGCAATAGCATGCAACAAGCTGACAATGCTGCTACTTTAGTCCTGCGTAGTTCAGCGAAAATGGCGAGCAGGCATTGCTTGAACACTACTTCGGATATGTGCAACAGTTCATGGAAAATGTTATGCAGATGCTTGCTCTTTATCAATGTCTTTCCATGA Coding sequence (CDS) ATGGAATCTATTGCTGAAGTTCAGTCACCGAACTGGGAATCTTTAGACCACTATTGGAAGAGGGAAAATCTGCAGGCCTTCTGCAATAGCATGCAACAAGCTGACAATGCTGCTACTTTAGTCCTGCGTAGTTCAGCGAAAATGGCGAGCAGGCATTGCTTGAACACTACTTCGGATATGTGCAACAGTTCATGGAAAATGTTATGCAGATGCTTGCTCTTTATCAATGTCTTTCCATGA Protein sequence MESIAEVQSPNWESLDHYWKRENLQAFCNSMQQADNAATLVLRSSAKMASRHCLNTTSDMCNSSWKMLCRCLLFINVFP*
Homology
BLAST of CsaV3_5G006130 vs. NCBI nr
Match: KGN50451.1 (hypothetical protein Csa_000144 [Cucumis sativus]) HSP 1 Score: 166.8 bits (421), Expect = 7.8e-38 Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0
Query: 1 MESIAEVQSPNWESLDHYWKRENLQAFCNSMQQADNAATLVLRSSAKMASRHCLNTTSDM 60
MESIAEVQSPNWESLDHYWKRENLQAFCNSMQQADNAATLVLRSSAKMASRHCLNTTSDM
Sbjct: 1 MESIAEVQSPNWESLDHYWKRENLQAFCNSMQQADNAATLVLRSSAKMASRHCLNTTSDM 60
Query: 61 CNSSWKMLCRCLLFINVFP 80
CNSSWKMLCRCLLFINVFP
Sbjct: 61 CNSSWKMLCRCLLFINVFP 79
BLAST of CsaV3_5G006130 vs. NCBI nr
Match: KAA0034065.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 120.2 bits (300), Expect = 8.3e-24 Identity = 57/61 (93.44%), Postives = 58/61 (95.08%), Query Frame = 0
Query: 19 WKRENLQAFCNSMQQADNAATLVLRSSAKMASRHCLNTTSDMCNSSWKMLCRCLLFINVF 78
WKRENLQAFCNSMQQADN ATLVLRSSAKMASRHCL TTSDMC+SSWKMLCRCLLFINV
Sbjct: 1035 WKRENLQAFCNSMQQADNDATLVLRSSAKMASRHCLKTTSDMCDSSWKMLCRCLLFINVL 1094
Query: 79 P 80
P
Sbjct: 1095 P 1095
BLAST of CsaV3_5G006130 vs. ExPASy TrEMBL
Match: A0A0A0KRX4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G175750 PE=4 SV=1) HSP 1 Score: 166.8 bits (421), Expect = 3.8e-38 Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0
Query: 1 MESIAEVQSPNWESLDHYWKRENLQAFCNSMQQADNAATLVLRSSAKMASRHCLNTTSDM 60
MESIAEVQSPNWESLDHYWKRENLQAFCNSMQQADNAATLVLRSSAKMASRHCLNTTSDM
Sbjct: 1 MESIAEVQSPNWESLDHYWKRENLQAFCNSMQQADNAATLVLRSSAKMASRHCLNTTSDM 60
Query: 61 CNSSWKMLCRCLLFINVFP 80
CNSSWKMLCRCLLFINVFP
Sbjct: 61 CNSSWKMLCRCLLFINVFP 79
BLAST of CsaV3_5G006130 vs. ExPASy TrEMBL
Match: A0A5A7SXZ3 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G00520 PE=4 SV=1) HSP 1 Score: 120.2 bits (300), Expect = 4.0e-24 Identity = 57/61 (93.44%), Postives = 58/61 (95.08%), Query Frame = 0
Query: 19 WKRENLQAFCNSMQQADNAATLVLRSSAKMASRHCLNTTSDMCNSSWKMLCRCLLFINVF 78
WKRENLQAFCNSMQQADN ATLVLRSSAKMASRHCL TTSDMC+SSWKMLCRCLLFINV
Sbjct: 1035 WKRENLQAFCNSMQQADNDATLVLRSSAKMASRHCLKTTSDMCDSSWKMLCRCLLFINVL 1094
Query: 79 P 80
P
Sbjct: 1095 P 1095
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KGN50451.1 | 7.8e-38 | 100.00 | hypothetical protein Csa_000144 [Cucumis sativus] | [more] |
| KAA0034065.1 | 8.3e-24 | 93.44 | pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KRX4 | 3.8e-38 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G175750 PE=4 SV=1 | [more] |
| A0A5A7SXZ3 | 4.0e-24 | 93.44 | Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
The following mRNA feature(s) are a part of this gene:
|
