CsaV3_5G005940 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G005940
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	ANK_REP_REGION domain-containing protein
Location	chr5: 3930340 .. 3932434 (-)
RNA-Seq Expression	CsaV3_5G005940
Synteny	CsaV3_5G005940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAATATGTTTTAATTCAGGAGAAAGAATTGAAAATCTTGAAGAAAGGATTAATCTGCATCGAACTGCACTTGTGGGTGATTGGGAAAATGCTCTATCTATTTTGGACGATAACGAATCATTGTTTAACGAGAGACAAGGAGCAAAGCACATCAATTTTGTGGAAAAGCTTGTAAAACAAATGATCAAAGAGGAAGTCTGTAAGAAAAATAGACATAAGAACGCTGCATTATGCTTTGCAGCTGCTTCCGGAGTTGTAATTATTAATTGCATGCTGAGGTTATGGATAATAAGAACAAAGAACTTCCACTTATTCACGGCTTTGGCGATACTCCTCGTTTCGTGGCAGAAGATAACTACACACATTGATGAGGAAATTACAAGATCTATGAAGATTCTGAAGAAATATAGAGAAGCAAAGACCTACGTCCATGGGAAGATTGGAGCAGATTTTTTGTACTTTCTTGGAGAAGATTTCAATTCTTTCTCAGATGAGTTCTTACAACTATCTCGCTCTCTGTTTTACTCACTTTTATAGTTGATATAAACACCAATCATCTCAACAGAAATTTTCAACTGATTTTAATTCACTAAGTTTGTATTCTAAAAAACCTTCAATTTGGTTTTGAAGGCGTAGAATAGTAAATGTAGTATCCTACAAATAAAATGCAGAACTATTAACTTGCAGAATTAGCTTCAGAACAAGCAATAGCCTTAGGTAAGGGTAAAGTGAAAGGAGATGATGACAATTTACGTTGACGAGGCCTAAAAAGATATTTAGACAAATAGGTGTTGTGATATATATCCACCCATAGTTTAAACTGCAGCACGCAAAAGCAGCAAACTGGATCAATCGTTGTGGTAGCCACTATTTTAGGAACCCATACATTTGCATTATTGTGGCAGTGAATCCAATAAGCAATCGAGAGGGCAAAGACTGTCTAAAAAGATATTTAGACAAATAGGTGTTGTGATATATATCCACCCATAGTTTAAACTGCAGCACGCAAAAGCAGCAAACTGGATCAATTGTTGTGGTAGCCACTATTTTAGGAACCCATACATTTGCATTATTGTGGCAGTGAATCCAATAACCCATACTTACTTAATTATTAATTGTCCCAAAAGTTTTGGATGGTATATTCATCTTGATAATTAAGTAAGTTACCTTGTACCAAAGTAATTCACGTTGCATTTGAAGGACTGCTCCTGAGACCCTATTGAGGTGGTTAGGAGCAGCTAGTTTTGCAGCCAAATGTAGAATATTATATTTTCCTTTGACAGTTATTCTATATTTTGCAGAAAAGTCCTTAAGGCCACCAATCTCATATATTAGATTGGACACGTCCTCAAGTCGATGCTCAACCGCTACGTGAAATATACTTTTACCATCATCGTCTTCTTCCCATACAATATCTGGATATCTACGAATCAGTAAAACACAAAAACTCCACATTTCCTTCACTGGCAGCGTCGTGAAGCAATCTTGGAGGATGTCTTATGAAGCTCAGCATTTCCTTTTGTGGCAACTCGTATACAACATAGGCTAGTACCTTCATCTCTTCTTTTTCTGATATCCTTTTCATTGTTGTGCATGCACAACAAAGATTAAAAATCTTGTTTTCTAGAATAATTTCAAATATAACAAAATCATAATAGATTAATATTGTAGCAATATATGGTCTATCACTAATACATGAGTATTAGAGCTAAGTTTAAATTCTGTGGAATTTCAATATATTTGCAACAACTTAGCCTAAATAATTTTGAAGTGTAAAATTGCAGTTAAAAGAGAACTGACAAGTGATGCAACTTTTCCAAAAGCTTAGTCGATCTCCACTGTGGAATGCGGATGGTTTTCTAGCCATGACATGCAATGCTGTCTCGTTGTTATTTTTTGTGTCATACGCAGTAGCCAAAGTTGGATCATCTTCCAATATTTTCAAACTTATATCTGTAAAGAAGAAGTTAAAAACCAAATCATTAGACAACTTATTATTTATTTAATTTAATGTGATTGTTTTCTCAAATACGAATTGTAACCATTTGAATTCTTATCAAATTCTATACAACAAGAAAAAAATATTAAAAAA

mRNA sequence

ATGTCAATATGTTTTAATTCAGGAGAAAGAATTGAAAATCTTGAAGAAAGGATTAATCTGCATCGAACTGCACTTGTGGGTGATTGGGAAAATGCTCTATCTATTTTGGACGATAACGAATCATTGTTTAACGAGAGACAAGGAGCAAAGCACATCAATTTTGTGGAAAAGCTTGTAAAACAAATGATCAAAGAGGAAGTCTGTAAGAAAAATAGACATAAGAACGCTGCATTATGCTTTGCAGCTGCTTCCGGAGTTGTAATTATTAATTGCATGCTGAGGTTATGGATAATAAGAACAAAGAACTTCCACTTATTCACGGCTTTGGCGATACTCCTCGTTTCGTGGCAGAAGATAACTACACACATTGATGAGGAAATTACAAGATCTATGAAGATTCTGAAGAAATATAGAGAAGCAAAGACCTACGTCCATGGGAAGATTGGAGCAGATTTTTTGTACTTTCTTGGAGAAGATTTCAATTCTTTCTCAGATGAGTTCTTACAACTATCTCGCTCTCTGTTTTACTCACTTTTATAG

Coding sequence (CDS)

ATGTCAATATGTTTTAATTCAGGAGAAAGAATTGAAAATCTTGAAGAAAGGATTAATCTGCATCGAACTGCACTTGTGGGTGATTGGGAAAATGCTCTATCTATTTTGGACGATAACGAATCATTGTTTAACGAGAGACAAGGAGCAAAGCACATCAATTTTGTGGAAAAGCTTGTAAAACAAATGATCAAAGAGGAAGTCTGTAAGAAAAATAGACATAAGAACGCTGCATTATGCTTTGCAGCTGCTTCCGGAGTTGTAATTATTAATTGCATGCTGAGGTTATGGATAATAAGAACAAAGAACTTCCACTTATTCACGGCTTTGGCGATACTCCTCGTTTCGTGGCAGAAGATAACTACACACATTGATGAGGAAATTACAAGATCTATGAAGATTCTGAAGAAATATAGAGAAGCAAAGACCTACGTCCATGGGAAGATTGGAGCAGATTTTTTGTACTTTCTTGGAGAAGATTTCAATTCTTTCTCAGATGAGTTCTTACAACTATCTCGCTCTCTGTTTTACTCACTTTTATAG

Protein sequence

MSICFNSGERIENLEERINLHRTALVGDWENALSILDDNESLFNERQGAKHINFVEKLVKQMIKEEVCKKNRHKNAALCFAAASGVVIINCMLRLWIIRTKNFHLFTALAILLVSWQKITTHIDEEITRSMKILKKYREAKTYVHGKIGADFLYFLGEDFNSFSDEFLQLSRSLFYSLL*

Homology

[Close]

BLAST of CsaV3_5G005940 vs. NCBI nr
Match: KGN50435.1 (hypothetical protein Csa_000388 [Cucumis sativus])

HSP 1 Score: 357.1 bits (915), Expect = 9.1e-95
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 1   MSICFNSGERIENLEERINLHRTALVGDWENALSILDDNESLFNERQGAKHINFVEKLVK 60
           MSICFNSGERIENLEERINLHRTALVGDWENALSILDDNESLFNERQGAKHINFVEKLVK
Sbjct: 1   MSICFNSGERIENLEERINLHRTALVGDWENALSILDDNESLFNERQGAKHINFVEKLVK 60

Query: 61  QMIKEEVCKKNRHKNAALCFAAASGVVIINCMLRLWIIRTKNFHLFTALAILLVSWQKIT 120
           QMIKEEVCKKNRHKNAALCFAAASGVVIINCMLRLWIIRTKNFHLFTALAILLVSWQKIT
Sbjct: 61  QMIKEEVCKKNRHKNAALCFAAASGVVIINCMLRLWIIRTKNFHLFTALAILLVSWQKIT 120

Query: 121 THIDEEITRSMKILKKYREAKTYVHGKIGADFLYFLGEDFNSFSDEFLQLSRSLFYSLL 180
           THIDEEITRSMKILKKYREAKTYVHGKIGADFLYFLGEDFNSFSDEFLQLSRSLFYSLL
Sbjct: 121 THIDEEITRSMKILKKYREAKTYVHGKIGADFLYFLGEDFNSFSDEFLQLSRSLFYSLL 179

[Close]

BLAST of CsaV3_5G005940 vs. NCBI nr
Match: XP_008467210.1 (PREDICTED: uncharacterized protein LOC103504614 [Cucumis melo])

HSP 1 Score: 110.2 bits (274), Expect = 1.9e-20
Identity = 61/93 (65.59%), Postives = 68/93 (73.12%), Query Frame = 0


Query: 9   ERIENLEERINLHRTALVGDWENALSILDDNESLFNE------------RQGAKHINFVE 68
           ER ENLEERINL+RTAL GDW+NAL ILD N+SL +               GAKHINFVE
Sbjct: 16  ERKENLEERINLYRTALEGDWDNALYILDRNQSLLSASITRDKETALHIAAGAKHINFVE 75

Query: 69  KLVKQMIKEEVCKKNRHKNAALCFAAASGVVII 90
           +LV++M KEEV KKNRH N ALCFAAASGVV I
Sbjct: 76  ELVRKMSKEEVGKKNRHGNTALCFAAASGVVRI 108

[Close]

BLAST of CsaV3_5G005940 vs. NCBI nr
Match: XP_011654897.2 (ankyrin repeat-containing protein ITN1 [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 7.4e-20
Identity = 61/93 (65.59%), Postives = 66/93 (70.97%), Query Frame = 0


Query: 9   ERIENLEERINLHRTALVGDWENALSILDDNESLFNE------------RQGAKHINFVE 68
           ER ENLEERINL+RTAL GDW+NAL ILD N SL +               GAKH NFVE
Sbjct: 16  ERKENLEERINLYRTALDGDWDNALYILDHNPSLLSASITRDKETALHIAAGAKHTNFVE 75

Query: 69  KLVKQMIKEEVCKKNRHKNAALCFAAASGVVII 90
           +LVK+M KEEV KKNRH N ALCFAAASGVV I
Sbjct: 76  ELVKKMSKEEVGKKNRHGNTALCFAAASGVVRI 108

[Close]

BLAST of CsaV3_5G005940 vs. NCBI nr
Match: KGN49940.2 (hypothetical protein Csa_000550 [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 7.4e-20
Identity = 61/93 (65.59%), Postives = 66/93 (70.97%), Query Frame = 0


Query: 9   ERIENLEERINLHRTALVGDWENALSILDDNESLFNE------------RQGAKHINFVE 68
           ER ENLEERINL+RTAL GDW+NAL ILD N SL +               GAKH NFVE
Sbjct: 16  ERKENLEERINLYRTALDGDWDNALYILDHNPSLLSASITRDKETALHIAAGAKHTNFVE 75

Query: 69  KLVKQMIKEEVCKKNRHKNAALCFAAASGVVII 90
           +LVK+M KEEV KKNRH N ALCFAAASGVV I
Sbjct: 76  ELVKKMSKEEVGKKNRHGNTALCFAAASGVVRI 108

[Close]

BLAST of CsaV3_5G005940 vs. NCBI nr
Match: XP_038875615.1 (uncharacterized protein LOC120068020 isoform X2 [Benincasa hispida])

HSP 1 Score: 102.8 bits (255), Expect = 3.1e-18
Identity = 62/109 (56.88%), Postives = 71/109 (65.14%), Query Frame = 0


Query: 9   ERIENLEERINLHRTALVGDWENALSILDDNESLFNE------------RQGAKHINFVE 68
           +RIENLE+RINL+RTAL GDW+NA SIL +N+SL                 GAKH  FVE
Sbjct: 71  QRIENLEQRINLYRTALEGDWKNAQSILVNNKSLLTASITRDKETALHIAAGAKHSGFVE 130

Query: 69  KLVKQMIKEEVCKKNRHKNAALCFAAASGVVIINCMLRLWIIRTKNFHL 106
           +LVKQM KEEV  KNRH N ALCFAAASGVV I       ++  KN HL
Sbjct: 131 ELVKQMSKEEVALKNRHGNTALCFAAASGVVKI-----AEVMVNKNKHL 174

[Close]

BLAST of CsaV3_5G005940 vs. ExPASy TrEMBL
Match: A0A0A0KL86 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G174610 PE=4 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 4.4e-95
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 1   MSICFNSGERIENLEERINLHRTALVGDWENALSILDDNESLFNERQGAKHINFVEKLVK 60
           MSICFNSGERIENLEERINLHRTALVGDWENALSILDDNESLFNERQGAKHINFVEKLVK
Sbjct: 1   MSICFNSGERIENLEERINLHRTALVGDWENALSILDDNESLFNERQGAKHINFVEKLVK 60

Query: 61  QMIKEEVCKKNRHKNAALCFAAASGVVIINCMLRLWIIRTKNFHLFTALAILLVSWQKIT 120
           QMIKEEVCKKNRHKNAALCFAAASGVVIINCMLRLWIIRTKNFHLFTALAILLVSWQKIT
Sbjct: 61  QMIKEEVCKKNRHKNAALCFAAASGVVIINCMLRLWIIRTKNFHLFTALAILLVSWQKIT 120

Query: 121 THIDEEITRSMKILKKYREAKTYVHGKIGADFLYFLGEDFNSFSDEFLQLSRSLFYSLL 180
           THIDEEITRSMKILKKYREAKTYVHGKIGADFLYFLGEDFNSFSDEFLQLSRSLFYSLL
Sbjct: 121 THIDEEITRSMKILKKYREAKTYVHGKIGADFLYFLGEDFNSFSDEFLQLSRSLFYSLL 179

[Close]

BLAST of CsaV3_5G005940 vs. ExPASy TrEMBL
Match: A0A1S3CUB2 (uncharacterized protein LOC103504614 OS=Cucumis melo OX=3656 GN=LOC103504614 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 9.4e-21
Identity = 61/93 (65.59%), Postives = 68/93 (73.12%), Query Frame = 0


Query: 9   ERIENLEERINLHRTALVGDWENALSILDDNESLFNE------------RQGAKHINFVE 68
           ER ENLEERINL+RTAL GDW+NAL ILD N+SL +               GAKHINFVE
Sbjct: 16  ERKENLEERINLYRTALEGDWDNALYILDRNQSLLSASITRDKETALHIAAGAKHINFVE 75

Query: 69  KLVKQMIKEEVCKKNRHKNAALCFAAASGVVII 90
           +LV++M KEEV KKNRH N ALCFAAASGVV I
Sbjct: 76  ELVRKMSKEEVGKKNRHGNTALCFAAASGVVRI 108

[Close]

BLAST of CsaV3_5G005940 vs. ExPASy TrEMBL
Match: A0A0A0KRV4 (ANK_REP_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G174620 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 3.6e-20
Identity = 61/93 (65.59%), Postives = 66/93 (70.97%), Query Frame = 0


Query: 9   ERIENLEERINLHRTALVGDWENALSILDDNESLFNE------------RQGAKHINFVE 68
           ER ENLEERINL+RTAL GDW+NAL ILD N SL +               GAKH NFVE
Sbjct: 16  ERKENLEERINLYRTALDGDWDNALYILDHNPSLLSASITRDKETALHIAAGAKHTNFVE 75

Query: 69  KLVKQMIKEEVCKKNRHKNAALCFAAASGVVII 90
           +LVK+M KEEV KKNRH N ALCFAAASGVV I
Sbjct: 76  ELVKKMSKEEVGKKNRHGNTALCFAAASGVVRI 108

[Close]

BLAST of CsaV3_5G005940 vs. ExPASy TrEMBL
Match: A0A0A0KNG9 (ANK_REP_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G174600 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.9e-13
Identity = 48/90 (53.33%), Postives = 58/90 (64.44%), Query Frame = 0


Query: 12  ENLEERINLHRTALVGDWENA------------LSILDDNESLFNERQGAKHINFVEKLV 71
           EN+EE+INL+++AL G+WE A             SI  D E   +   GAKH +FV+ LV
Sbjct: 35  ENVEEKINLYQSALEGNWETAEYILMKKRSLLSASITRDKERALHIAAGAKHTDFVKNLV 94

Query: 72  KQMIKEEVCKKNRHKNAALCFAAASGVVII 90
           KQM KEE+  KNRH N ALCFAAASGVV I
Sbjct: 95  KQMNKEEIALKNRHGNTALCFAAASGVVKI 124

[Close]

BLAST of CsaV3_5G005940 vs. ExPASy TrEMBL
Match: A0A6J1GT26 (ankyrin repeat-containing protein NPR4-like OS=Cucurbita moschata OX=3662 GN=LOC111457222 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.4e-08
Identity = 38/94 (40.43%), Postives = 54/94 (57.45%), Query Frame = 0


Query: 9   ERIENLEERINLHRTALVGDWENALSILD-------------DNESLFNERQGAKHINFV 68
           +++    ++I+L+  AL GDWE A SIL              DNE+  +   GAKH++FV
Sbjct: 108 KQLRTTAKKISLYHAALKGDWEKAQSILGADPSWAVSNYITRDNETALHIAAGAKHVDFV 167

Query: 69  EKLVKQMIKEEVCKKNRHKNAALCFAAASGVVII 90
           E+L+  M  +++   N H N ALCFAA SGVV I
Sbjct: 168 EQLINIMTPDDMTMVNTHGNTALCFAATSGVVRI 201

[Close]

BLAST of CsaV3_5G005940 vs. TAIR 10
Match: AT5G35830.1 (Ankyrin repeat family protein )

HSP 1 Score: 48.5 bits (114), Expect = 6.5e-06
Identity = 31/88 (35.23%), Postives = 45/88 (51.14%), Query Frame = 0


Query: 18  INLHRTALVGDWENALSIL------------DDNESLFNERQGAKHINFVEKLVKQMIKE 77
           + L++ AL GDW+ A  I+              +E++ +    AKH  FV  L+  +   
Sbjct: 89  VQLYQAALKGDWKAANGIIIEQKYIIYQKITSKSETVLHIAVAAKHEGFVRNLLGSLESN 148

Query: 78  EVCKKNRHKNAALCFAAASGVVIINCML 94
           ++  +N   N ALCFAAASGVV I  ML
Sbjct: 149 DLALRNVDGNTALCFAAASGVVEIAKML 176

The following BLAST results are available for this feature:

BLAST of CsaV3_5G005940 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN50435.1	9.1e-95	100.00	hypothetical protein Csa_000388 [Cucumis sativus]	[more]
XP_008467210.1	1.9e-20	65.59	PREDICTED: uncharacterized protein LOC103504614 [Cucumis melo]	[more]
XP_011654897.2	7.4e-20	65.59	ankyrin repeat-containing protein ITN1 [Cucumis sativus]	[more]
KGN49940.2	7.4e-20	65.59	hypothetical protein Csa_000550 [Cucumis sativus]	[more]
XP_038875615.1	3.1e-18	56.88	uncharacterized protein LOC120068020 isoform X2 [Benincasa hispida]	[more]

BLAST of CsaV3_5G005940 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G005940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KL86	4.4e-95	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G174610 PE=4 SV=1	[more]
A0A1S3CUB2	9.4e-21	65.59	uncharacterized protein LOC103504614 OS=Cucumis melo OX=3656 GN=LOC103504614 PE=...	[more]
A0A0A0KRV4	3.6e-20	65.59	ANK_REP_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G174...	[more]
A0A0A0KNG9	1.9e-13	53.33	ANK_REP_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G174...	[more]
A0A6J1GT26	1.4e-08	40.43	ankyrin repeat-containing protein NPR4-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]

BLAST of CsaV3_5G005940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G35830.1	6.5e-06	35.23	Ankyrin repeat family protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G005940.1	CsaV3_5G005940.1	mRNA