CsaV3_5G005780 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G005780
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	protein ROOT PRIMORDIUM DEFECTIVE 1
Location	chr5: 3797483 .. 3798871 (-)
RNA-Seq Expression	CsaV3_5G005780
Synteny	CsaV3_5G005780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGATCTTTTTTGGCTACCACCCTAAATCCCTCACCTCCAATTTTACATCATTCAAAACCAGGGCTTTTTTTCTCTTCAATTTAACTCTCTCACGATCAATGTCTCAATCCACCTCCATTCCCAAAAACCTCCAAAGGGTTCGTGACCATGGCTACGATAATTACATGGAAGTGGAGAAGAAAACCCGTAAAGTGCTCAAGTTTCAGGAACTTATTCTCTCCCAATTCAACCAGACAATCCCAGTTTCTCGCCTTGATATCTTAGCTCGCCGCCTTGGGTTCAAGCAACACGAAGCTGGGGCCTTCGTCCTCAAATTCCCTCATGTATTTGAAATCTATGAGCACCCTGTTCAAAGAATCCTCTATTGCAGGTTAACCCGAAAAGCCCACCTCCAAATCGAGCAGCAAAAGCGAGCTGTCATTGCCCAGATTCCGGATGCTGTCACTAGACTGAGGAAACTCTTGATGATGTCGAACAATGGCCGTCTTCGCCTCGAGCATATTCGGATTGCTCGGTCTGAATTCGGGTTACCTGACGATTTTGAATATTCGGTAGTTCTCAAACACCCTCAATTCTTTAGACTCTTTGATGCTAAAGAAACTAGGAATAAGTACATTGAAATTGTAGAAAGAGATCCAAGTCTTACTGTTTGTGCAATAGAGAGAGCCAGGGAGAGGGTTTATAGAGAGAAAGGAAGTGATGCTGAGGACATTAGATTCTCTTTCGTTGTGAATTTTCCCCCTGGGTTTAAGATAGGGAAGTATTTCAGAATTGCAATGTGGAAATGGCAGCGGCTTCCTTATTGGTCGCCATATGAGGACATTTCTGAGTATGATATGAGGTCCATTGAAGCACAGAAGAGGATGGAGAAGAGGGCAGTGGCAACAATTCATGAGATGTTGTCTTTGACTGTAGAGAAGAAGATTACATTGGAACGGATTGCGCATTTTCGATTAGCAATGTATCTGCCCAAGAAGTTGAAGGACTTCCTTCTTCAACATCAGGGAATTTTCTACATTTCAACAAGAGGAAACCATGGGAAACTTCACACTGTTTTCCTCAGGGAAGGTTATAGGAGAAGTGAGTTAGTAGAGCCTAATGATGTGTATTTGGCTAGAAGACAATTGGCTGAATTGGTTTTACTCAGTCCAAGGAAGGCAACAGTAGACAGGGAACTAGTTGGGTACAGGAGAGAGAGAGTGGGTTATGATATGGAAAATTCTAGGACAGATTATGTGGAGGATAAATCTGTTGATTTTGGCGTTGAGAACAAAGGCAATGTGAGAGATGTTTTGGACTCAGACATAGGTTCTGATGTTGAATCTGATTTCTCTGATGATGATAATCATAGTGTCGAGGTAGAGGATGTGGACATAACAGAATAA

mRNA sequence

ATGTTGATCTTTTTTGGCTACCACCCTAAATCCCTCACCTCCAATTTTACATCATTCAAAACCAGGGCTTTTTTTCTCTTCAATTTAACTCTCTCACGATCAATGTCTCAATCCACCTCCATTCCCAAAAACCTCCAAAGGGTTCGTGACCATGGCTACGATAATTACATGGAAGTGGAGAAGAAAACCCGTAAAGTGCTCAAGTTTCAGGAACTTATTCTCTCCCAATTCAACCAGACAATCCCAGTTTCTCGCCTTGATATCTTAGCTCGCCGCCTTGGGTTCAAGCAACACGAAGCTGGGGCCTTCGTCCTCAAATTCCCTCATGTATTTGAAATCTATGAGCACCCTGTTCAAAGAATCCTCTATTGCAGGTTAACCCGAAAAGCCCACCTCCAAATCGAGCAGCAAAAGCGAGCTGTCATTGCCCAGATTCCGGATGCTGTCACTAGACTGAGGAAACTCTTGATGATGTCGAACAATGGCCGTCTTCGCCTCGAGCATATTCGGATTGCTCGGTCTGAATTCGGGTTACCTGACGATTTTGAATATTCGGTAGTTCTCAAACACCCTCAATTCTTTAGACTCTTTGATGCTAAAGAAACTAGGAATAAGTACATTGAAATTGTAGAAAGAGATCCAAGTCTTACTGTTTGTGCAATAGAGAGAGCCAGGGAGAGGGTTTATAGAGAGAAAGGAAGTGATGCTGAGGACATTAGATTCTCTTTCGTTGTGAATTTTCCCCCTGGGTTTAAGATAGGGAAGTATTTCAGAATTGCAATGTGGAAATGGCAGCGGCTTCCTTATTGGTCGCCATATGAGGACATTTCTGAGTATGATATGAGGTCCATTGAAGCACAGAAGAGGATGGAGAAGAGGGCAGTGGCAACAATTCATGAGATGTTGTCTTTGACTGTAGAGAAGAAGATTACATTGGAACGGATTGCGCATTTTCGATTAGCAATGTATCTGCCCAAGAAGTTGAAGGACTTCCTTCTTCAACATCAGGGAATTTTCTACATTTCAACAAGAGGAAACCATGGGAAACTTCACACTGTTTTCCTCAGGGAAGGTTATAGGAGAAGTGAGTTAGTAGAGCCTAATGATGTGTATTTGGCTAGAAGACAATTGGCTGAATTGGTTTTACTCAGTCCAAGGAAGGCAACAGTAGACAGGGAACTAGTTGGGTACAGGAGAGAGAGAGTGGGTTATGATATGGAAAATTCTAGGACAGATTATGTGGAGGATAAATCTGTTGATTTTGGCGTTGAGAACAAAGGCAATGTGAGAGATGTTTTGGACTCAGACATAGGTTCTGATGTTGAATCTGATTTCTCTGATGATGATAATCATAGTGTCGAGGTAGAGGATGTGGACATAACAGAATAA

Coding sequence (CDS)

ATGTTGATCTTTTTTGGCTACCACCCTAAATCCCTCACCTCCAATTTTACATCATTCAAAACCAGGGCTTTTTTTCTCTTCAATTTAACTCTCTCACGATCAATGTCTCAATCCACCTCCATTCCCAAAAACCTCCAAAGGGTTCGTGACCATGGCTACGATAATTACATGGAAGTGGAGAAGAAAACCCGTAAAGTGCTCAAGTTTCAGGAACTTATTCTCTCCCAATTCAACCAGACAATCCCAGTTTCTCGCCTTGATATCTTAGCTCGCCGCCTTGGGTTCAAGCAACACGAAGCTGGGGCCTTCGTCCTCAAATTCCCTCATGTATTTGAAATCTATGAGCACCCTGTTCAAAGAATCCTCTATTGCAGGTTAACCCGAAAAGCCCACCTCCAAATCGAGCAGCAAAAGCGAGCTGTCATTGCCCAGATTCCGGATGCTGTCACTAGACTGAGGAAACTCTTGATGATGTCGAACAATGGCCGTCTTCGCCTCGAGCATATTCGGATTGCTCGGTCTGAATTCGGGTTACCTGACGATTTTGAATATTCGGTAGTTCTCAAACACCCTCAATTCTTTAGACTCTTTGATGCTAAAGAAACTAGGAATAAGTACATTGAAATTGTAGAAAGAGATCCAAGTCTTACTGTTTGTGCAATAGAGAGAGCCAGGGAGAGGGTTTATAGAGAGAAAGGAAGTGATGCTGAGGACATTAGATTCTCTTTCGTTGTGAATTTTCCCCCTGGGTTTAAGATAGGGAAGTATTTCAGAATTGCAATGTGGAAATGGCAGCGGCTTCCTTATTGGTCGCCATATGAGGACATTTCTGAGTATGATATGAGGTCCATTGAAGCACAGAAGAGGATGGAGAAGAGGGCAGTGGCAACAATTCATGAGATGTTGTCTTTGACTGTAGAGAAGAAGATTACATTGGAACGGATTGCGCATTTTCGATTAGCAATGTATCTGCCCAAGAAGTTGAAGGACTTCCTTCTTCAACATCAGGGAATTTTCTACATTTCAACAAGAGGAAACCATGGGAAACTTCACACTGTTTTCCTCAGGGAAGGTTATAGGAGAAGTGAGTTAGTAGAGCCTAATGATGTGTATTTGGCTAGAAGACAATTGGCTGAATTGGTTTTACTCAGTCCAAGGAAGGCAACAGTAGACAGGGAACTAGTTGGGTACAGGAGAGAGAGAGTGGGTTATGATATGGAAAATTCTAGGACAGATTATGTGGAGGATAAATCTGTTGATTTTGGCGTTGAGAACAAAGGCAATGTGAGAGATGTTTTGGACTCAGACATAGGTTCTGATGTTGAATCTGATTTCTCTGATGATGATAATCATAGTGTCGAGGTAGAGGATGTGGACATAACAGAATAA

Protein sequence

MLIFFGYHPKSLTSNFTSFKTRAFFLFNLTLSRSMSQSTSIPKNLQRVRDHGYDNYMEVEKKTRKVLKFQELILSQFNQTIPVSRLDILARRLGFKQHEAGAFVLKFPHVFEIYEHPVQRILYCRLTRKAHLQIEQQKRAVIAQIPDAVTRLRKLLMMSNNGRLRLEHIRIARSEFGLPDDFEYSVVLKHPQFFRLFDAKETRNKYIEIVERDPSLTVCAIERARERVYREKGSDAEDIRFSFVVNFPPGFKIGKYFRIAMWKWQRLPYWSPYEDISEYDMRSIEAQKRMEKRAVATIHEMLSLTVEKKITLERIAHFRLAMYLPKKLKDFLLQHQGIFYISTRGNHGKLHTVFLREGYRRSELVEPNDVYLARRQLAELVLLSPRKATVDRELVGYRRERVGYDMENSRTDYVEDKSVDFGVENKGNVRDVLDSDIGSDVESDFSDDDNHSVEVEDVDITE*

Homology

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BLAST of CsaV3_5G005780 vs. NCBI nr
Match: XP_004143708.2 (protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis sativus] >KAE8647948.1 hypothetical protein Csa_000134 [Cucumis sativus])

HSP 1 Score: 907.1 bits (2343), Expect = 6.1e-260
Identity = 462/462 (100.00%), Postives = 462/462 (100.00%), Query Frame = 0


Query: 1   MLIFFGYHPKSLTSNFTSFKTRAFFLFNLTLSRSMSQSTSIPKNLQRVRDHGYDNYMEVE 60
           MLIFFGYHPKSLTSNFTSFKTRAFFLFNLTLSRSMSQSTSIPKNLQRVRDHGYDNYMEVE
Sbjct: 1   MLIFFGYHPKSLTSNFTSFKTRAFFLFNLTLSRSMSQSTSIPKNLQRVRDHGYDNYMEVE 60

Query: 61  KKTRKVLKFQELILSQFNQTIPVSRLDILARRLGFKQHEAGAFVLKFPHVFEIYEHPVQR 120
           KKTRKVLKFQELILSQFNQTIPVSRLDILARRLGFKQHEAGAFVLKFPHVFEIYEHPVQR
Sbjct: 61  KKTRKVLKFQELILSQFNQTIPVSRLDILARRLGFKQHEAGAFVLKFPHVFEIYEHPVQR 120

Query: 121 ILYCRLTRKAHLQIEQQKRAVIAQIPDAVTRLRKLLMMSNNGRLRLEHIRIARSEFGLPD 180
           ILYCRLTRKAHLQIEQQKRAVIAQIPDAVTRLRKLLMMSNNGRLRLEHIRIARSEFGLPD
Sbjct: 121 ILYCRLTRKAHLQIEQQKRAVIAQIPDAVTRLRKLLMMSNNGRLRLEHIRIARSEFGLPD 180

Query: 181 DFEYSVVLKHPQFFRLFDAKETRNKYIEIVERDPSLTVCAIERARERVYREKGSDAEDIR 240
           DFEYSVVLKHPQFFRLFDAKETRNKYIEIVERDPSLTVCAIERARERVYREKGSDAEDIR
Sbjct: 181 DFEYSVVLKHPQFFRLFDAKETRNKYIEIVERDPSLTVCAIERARERVYREKGSDAEDIR 240

Query: 241 FSFVVNFPPGFKIGKYFRIAMWKWQRLPYWSPYEDISEYDMRSIEAQKRMEKRAVATIHE 300
           FSFVVNFPPGFKIGKYFRIAMWKWQRLPYWSPYEDISEYDMRSIEAQKRMEKRAVATIHE
Sbjct: 241 FSFVVNFPPGFKIGKYFRIAMWKWQRLPYWSPYEDISEYDMRSIEAQKRMEKRAVATIHE 300

Query: 301 MLSLTVEKKITLERIAHFRLAMYLPKKLKDFLLQHQGIFYISTRGNHGKLHTVFLREGYR 360
           MLSLTVEKKITLERIAHFRLAMYLPKKLKDFLLQHQGIFYISTRGNHGKLHTVFLREGYR
Sbjct: 301 MLSLTVEKKITLERIAHFRLAMYLPKKLKDFLLQHQGIFYISTRGNHGKLHTVFLREGYR 360

Query: 361 RSELVEPNDVYLARRQLAELVLLSPRKATVDRELVGYRRERVGYDMENSRTDYVEDKSVD 420
           RSELVEPNDVYLARRQLAELVLLSPRKATVDRELVGYRRERVGYDMENSRTDYVEDKSVD
Sbjct: 361 RSELVEPNDVYLARRQLAELVLLSPRKATVDRELVGYRRERVGYDMENSRTDYVEDKSVD 420

Query: 421 FGVENKGNVRDVLDSDIGSDVESDFSDDDNHSVEVEDVDITE 463
           FGVENKGNVRDVLDSDIGSDVESDFSDDDNHSVEVEDVDITE
Sbjct: 421 FGVENKGNVRDVLDSDIGSDVESDFSDDDNHSVEVEDVDITE 462

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BLAST of CsaV3_5G005780 vs. NCBI nr
Match: XP_016898810.1 (PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo] >XP_016898811.1 PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo] >XP_016898812.1 PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo] >XP_016898813.1 PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo])

HSP 1 Score: 876.3 bits (2263), Expect = 1.1e-250
Identity = 445/462 (96.32%), Postives = 451/462 (97.62%), Query Frame = 0


Query: 1   MLIFFGYHPKSLTSNFTSFKTRAFFLFNLTLSRSMSQSTSIPKNLQRVRDHGYDNYMEVE 60
           MLIFFGYHPK LTSNFTSFKTRA+FLFN T SRSMSQSTSIPKNLQRVRDHGYDNYMEVE
Sbjct: 1   MLIFFGYHPKFLTSNFTSFKTRAYFLFNFTRSRSMSQSTSIPKNLQRVRDHGYDNYMEVE 60

Query: 61  KKTRKVLKFQELILSQFNQTIPVSRLDILARRLGFKQHEAGAFVLKFPHVFEIYEHPVQR 120
           KK RKVLKFQ+LILSQFNQTIPVSRLDILARRLGFKQHEAGAFVLKFPHVFEIYEHPVQR
Sbjct: 61  KKIRKVLKFQDLILSQFNQTIPVSRLDILARRLGFKQHEAGAFVLKFPHVFEIYEHPVQR 120

Query: 121 ILYCRLTRKAHLQIEQQKRAVIAQIPDAVTRLRKLLMMSNNGRLRLEHIRIARSEFGLPD 180
           ILYCRLTRKAHLQIEQQKRAVIAQIPDAVTRLRKLLMMSN GRLRLEHIRIARSEFGLPD
Sbjct: 121 ILYCRLTRKAHLQIEQQKRAVIAQIPDAVTRLRKLLMMSNKGRLRLEHIRIARSEFGLPD 180

Query: 181 DFEYSVVLKHPQFFRLFDAKETRNKYIEIVERDPSLTVCAIERARERVYREKGSDAEDIR 240
           DFEYSVVLKHPQFFRLFDAKETRNKYIEIVERDPSLTVCAIERARERVYRE+GSDAEDIR
Sbjct: 181 DFEYSVVLKHPQFFRLFDAKETRNKYIEIVERDPSLTVCAIERARERVYREQGSDAEDIR 240

Query: 241 FSFVVNFPPGFKIGKYFRIAMWKWQRLPYWSPYEDISEYDMRSIEAQKRMEKRAVATIHE 300
           FSF+VNFPPGFKIGKYFRIAMWKWQRLPYWSPYEDISEYDMRSIEAQKRMEKRAVATIHE
Sbjct: 241 FSFIVNFPPGFKIGKYFRIAMWKWQRLPYWSPYEDISEYDMRSIEAQKRMEKRAVATIHE 300

Query: 301 MLSLTVEKKITLERIAHFRLAMYLPKKLKDFLLQHQGIFYISTRGNHGKLHTVFLREGYR 360
           MLSLTVEKK+TLERIAHFRLAM LPKKLKDFLLQHQGIFYISTRGNHGKLHTVFLREGYR
Sbjct: 301 MLSLTVEKKLTLERIAHFRLAMNLPKKLKDFLLQHQGIFYISTRGNHGKLHTVFLREGYR 360

Query: 361 RSELVEPNDVYLARRQLAELVLLSPRKATVDRELVGYRRERVGYDMENSRTDYVEDKSVD 420
           R ELVEPNDVYLARR LAELVLLSPRKA +DRELVGYRRERVGYDMEN RTDYVEDKS D
Sbjct: 361 RGELVEPNDVYLARRHLAELVLLSPRKAKLDRELVGYRRERVGYDMENCRTDYVEDKSDD 420

Query: 421 FGVENKGNVRDVLDSDIGSDVESDFSDDDNHSVEVEDVDITE 463
           FGVENKGNVRDVLDSDIGSDVESDFSDDDNHSVEVEDVDITE
Sbjct: 421 FGVENKGNVRDVLDSDIGSDVESDFSDDDNHSVEVEDVDITE 462

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BLAST of CsaV3_5G005780 vs. NCBI nr
Match: TYK00294.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo var. makuwa])

HSP 1 Score: 818.9 bits (2114), Expect = 2.2e-233
Identity = 415/428 (96.96%), Postives = 420/428 (98.13%), Query Frame = 0


Query: 35  MSQSTSIPKNLQRVRDHGYDNYMEVEKKTRKVLKFQELILSQFNQTIPVSRLDILARRLG 94
           MSQSTSIPKNLQRVRDHGYDNYMEVEKK RKVLKFQ+LILSQFNQTIPVSRLDILARRLG
Sbjct: 1   MSQSTSIPKNLQRVRDHGYDNYMEVEKKIRKVLKFQDLILSQFNQTIPVSRLDILARRLG 60

Query: 95  FKQHEAGAFVLKFPHVFEIYEHPVQRILYCRLTRKAHLQIEQQKRAVIAQIPDAVTRLRK 154
           FKQHEAGAFVLKFPHVFEIYEHPVQRILYCRLTRKAHLQIEQQKRAVIAQIPDAVTRLRK
Sbjct: 61  FKQHEAGAFVLKFPHVFEIYEHPVQRILYCRLTRKAHLQIEQQKRAVIAQIPDAVTRLRK 120

Query: 155 LLMMSNNGRLRLEHIRIARSEFGLPDDFEYSVVLKHPQFFRLFDAKETRNKYIEIVERDP 214
           LLMMSN GRLRLEHIRIARSEFGLPDDFEYSVVLKHPQFFRLFDAKETRNKYIEIVERDP
Sbjct: 121 LLMMSNKGRLRLEHIRIARSEFGLPDDFEYSVVLKHPQFFRLFDAKETRNKYIEIVERDP 180

Query: 215 SLTVCAIERARERVYREKGSDAEDIRFSFVVNFPPGFKIGKYFRIAMWKWQRLPYWSPYE 274
           SLTVCAIERARERVYRE+GSDAEDIRFSF+VNFPPGFKIGKYFRIAMWKWQRLPYWSPYE
Sbjct: 181 SLTVCAIERARERVYREQGSDAEDIRFSFIVNFPPGFKIGKYFRIAMWKWQRLPYWSPYE 240

Query: 275 DISEYDMRSIEAQKRMEKRAVATIHEMLSLTVEKKITLERIAHFRLAMYLPKKLKDFLLQ 334
           DISEYDMRSIEAQKRMEKRAVATIHEMLSLTVEKK+TLERIAHFRLAM LPKKLKDFLLQ
Sbjct: 241 DISEYDMRSIEAQKRMEKRAVATIHEMLSLTVEKKLTLERIAHFRLAMNLPKKLKDFLLQ 300

Query: 335 HQGIFYISTRGNHGKLHTVFLREGYRRSELVEPNDVYLARRQLAELVLLSPRKATVDREL 394
           HQGIFYISTRGNHGKLHTVFLREGYRR ELVEPNDVYLARR LAELVLLSPRKA +DREL
Sbjct: 301 HQGIFYISTRGNHGKLHTVFLREGYRRGELVEPNDVYLARRHLAELVLLSPRKAKLDREL 360

Query: 395 VGYRRERVGYDMENSRTDYVEDKSVDFGVENKGNVRDVLDSDIGSDVESDFSDDDNHSVE 454
           VGYRRERVGYDMEN RTDYVEDKS DFGVENKGNVRDVLDSDIGSDVESDFSDDDNHSVE
Sbjct: 361 VGYRRERVGYDMENCRTDYVEDKSDDFGVENKGNVRDVLDSDIGSDVESDFSDDDNHSVE 420

Query: 455 VEDVDITE 463
           VEDVDITE
Sbjct: 421 VEDVDITE 428

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BLAST of CsaV3_5G005780 vs. NCBI nr
Match: XP_038876292.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 [Benincasa hispida] >XP_038876293.1 protein ROOT PRIMORDIUM DEFECTIVE 1 [Benincasa hispida])

HSP 1 Score: 809.3 bits (2089), Expect = 1.7e-230
Identity = 412/465 (88.60%), Postives = 436/465 (93.76%), Query Frame = 0


Query: 2   LIFFGYHPKSLTSNFTSFKTRAFFLFNLTLSRSMSQSTSIPKNLQRVRDHGYDNYMEVEK 61
           +IFFG+H K LTS F +F+T A+FL N + SRSM+QSTSIPK LQRVRDHGYDNYMEVEK
Sbjct: 1   MIFFGHHRKFLTSKFIAFETTAYFLCNFSRSRSMTQSTSIPKKLQRVRDHGYDNYMEVEK 60

Query: 62  KTRKVLKFQELILSQFNQTIPVSRLDILARRLGFKQHEAGAFVLKFPHVFEIYEHPVQRI 121
           KTRKVLKFQ+LIL+Q NQTIPVSRLDILARRLGFKQHEAGAFVLKFPHVFEIYEHPVQRI
Sbjct: 61  KTRKVLKFQDLILTQINQTIPVSRLDILARRLGFKQHEAGAFVLKFPHVFEIYEHPVQRI 120

Query: 122 LYCRLTRKAHLQIEQQKRAVIAQIPDAVTRLRKLLMMSNNGRLRLEHIRIARSEFGLPDD 181
           LYCRLTRKAHLQIEQQK+AVIAQIPDAVTRLRKLLMMSNNGRLRLEHIRIARSEFGLPDD
Sbjct: 121 LYCRLTRKAHLQIEQQKQAVIAQIPDAVTRLRKLLMMSNNGRLRLEHIRIARSEFGLPDD 180

Query: 182 FEYSVVLKHPQFFRLFDAKETRNKYIEIVERDPSLTVCAIERARERVYREKGSDAEDIRF 241
           FEYSVVLK+PQFFRLFDAKETRNKYIEIVERDP+L VCAIERARERVYREKGSDAEDIRF
Sbjct: 181 FEYSVVLKYPQFFRLFDAKETRNKYIEIVERDPNLAVCAIERARERVYREKGSDAEDIRF 240

Query: 242 SFVVNFPPGFKIGKYFRIAMWKWQRLPYWSPYEDISEYDMRSIEAQKRMEKRAVATIHEM 301
           SF+VNFPPGFKIGKYFRIAMWKWQRLPYWSPYED+S+YDMRSIEA KRMEKRAVATIHEM
Sbjct: 241 SFIVNFPPGFKIGKYFRIAMWKWQRLPYWSPYEDVSKYDMRSIEALKRMEKRAVATIHEM 300

Query: 302 LSLTVEKKITLERIAHFRLAMYLPKKLKDFLLQHQGIFYISTRGNHGKLHTVFLREGYRR 361
           LSLTVEKKITLERIAHFRLAM LP KLKDFLLQHQGIFYISTRGNHGKLHTVFLREGYRR
Sbjct: 301 LSLTVEKKITLERIAHFRLAMNLPNKLKDFLLQHQGIFYISTRGNHGKLHTVFLREGYRR 360

Query: 362 SELVEPNDVYLARRQLAELVLLSPRKATVDRELVGYRRERVGYDMENSRTDYVEDKSVDF 421
            EL+EPNDVYLARR+LAELVLLSPRKA +D+ELVGYRRERVGYDME+ RTDYVEDK  DF
Sbjct: 361 GELIEPNDVYLARRKLAELVLLSPRKAKLDKELVGYRRERVGYDMESFRTDYVEDKFDDF 420

Query: 422 GVENKGNVRDVLDSDIGSDVESDFSDDDNHSVE----VEDVDITE 463
            V NKGNVRDVLDSD+ SDVE +FSDDDNHSV+     EDV+ TE
Sbjct: 421 AVGNKGNVRDVLDSDLDSDVEPNFSDDDNHSVDKTFKAEDVNETE 465

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BLAST of CsaV3_5G005780 vs. NCBI nr
Match: KAA0055169.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo var. makuwa])

HSP 1 Score: 804.3 bits (2076), Expect = 5.5e-229
Identity = 406/420 (96.67%), Postives = 412/420 (98.10%), Query Frame = 0


Query: 35  MSQSTSIPKNLQRVRDHGYDNYMEVEKKTRKVLKFQELILSQFNQTIPVSRLDILARRLG 94
           MSQSTSIPKNLQRVRDHGYDNYMEVEKK RKVLKFQ+LILSQFNQTIPVSRLDILARRLG
Sbjct: 1   MSQSTSIPKNLQRVRDHGYDNYMEVEKKIRKVLKFQDLILSQFNQTIPVSRLDILARRLG 60

Query: 95  FKQHEAGAFVLKFPHVFEIYEHPVQRILYCRLTRKAHLQIEQQKRAVIAQIPDAVTRLRK 154
           FKQHEAGAFVLKFPHVFEIYEHPVQRILYCRLTRKAHLQIEQQKRAVIAQIPDAVTRLRK
Sbjct: 61  FKQHEAGAFVLKFPHVFEIYEHPVQRILYCRLTRKAHLQIEQQKRAVIAQIPDAVTRLRK 120

Query: 155 LLMMSNNGRLRLEHIRIARSEFGLPDDFEYSVVLKHPQFFRLFDAKETRNKYIEIVERDP 214
           LLMMSN GRLRLEHIRIARSEFGLPDDFEYSVVLKHPQFFRLFDAKETRNKYIEIVERDP
Sbjct: 121 LLMMSNKGRLRLEHIRIARSEFGLPDDFEYSVVLKHPQFFRLFDAKETRNKYIEIVERDP 180

Query: 215 SLTVCAIERARERVYREKGSDAEDIRFSFVVNFPPGFKIGKYFRIAMWKWQRLPYWSPYE 274
           SLTVCAIERARERVYRE+GSDAEDIRFSF+VNFPPGFKIGKYFRIAMWKWQRLPYWSPYE
Sbjct: 181 SLTVCAIERARERVYREQGSDAEDIRFSFIVNFPPGFKIGKYFRIAMWKWQRLPYWSPYE 240

Query: 275 DISEYDMRSIEAQKRMEKRAVATIHEMLSLTVEKKITLERIAHFRLAMYLPKKLKDFLLQ 334
           DISEYDMRSIEAQKRMEKRAVATIHEMLSLTVEKK+TLERIAHFRLAM LPKKLKDFLLQ
Sbjct: 241 DISEYDMRSIEAQKRMEKRAVATIHEMLSLTVEKKLTLERIAHFRLAMNLPKKLKDFLLQ 300

Query: 335 HQGIFYISTRGNHGKLHTVFLREGYRRSELVEPNDVYLARRQLAELVLLSPRKATVDREL 394
           HQGIFYISTRGNHGKLHTVFLREGYRR +LVEPNDVYLARR LAELVLLSPRKA +DREL
Sbjct: 301 HQGIFYISTRGNHGKLHTVFLREGYRRGDLVEPNDVYLARRHLAELVLLSPRKAKLDREL 360

Query: 395 VGYRRERVGYDMENSRTDYVEDKSVDFGVENKGNVRDVLDSDIGSDVESDFSDDDNHSVE 454
           VGYRRERVGYDMEN RTDYVEDKS DFGVENKGNVRDVLDSDIGSDVESDFSDDDNHSVE
Sbjct: 361 VGYRRERVGYDMENCRTDYVEDKSDDFGVENKGNVRDVLDSDIGSDVESDFSDDDNHSVE 420

[Close]

BLAST of CsaV3_5G005780 vs. ExPASy Swiss-Prot
Match: Q689D6 (Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana OX=3702 GN=RPD1 PE=1 SV=1)

HSP 1 Score: 599.4 bits (1544), Expect = 3.6e-170
Identity = 299/373 (80.16%), Postives = 330/373 (88.47%), Query Frame = 0


Query: 28  NLTLSRSMSQSTSIPKNLQRVRDHGYDNYMEVEKKTRKVLKFQELILSQFNQTIPVSRLD 87
           NL L +  SQST+IPK   RVRDHGYDNYMEVEKK RKV+KF  LILSQ N TI +S LD
Sbjct: 27  NLILVKPFSQSTTIPKKQDRVRDHGYDNYMEVEKKIRKVVKFHSLILSQPNHTIAISLLD 86

Query: 88  ILARR--LGFKQHEAGAFVLKFPHVFEIYEHPVQRILYCRLTRKAHLQIEQQKRAVIAQI 147
            LARR  LGFKQHE GAF+LKFPHVFEIYEHPVQRILYCRLTRKA  QI  +  AV+ QI
Sbjct: 87  TLARRLGLGFKQHEPGAFLLKFPHVFEIYEHPVQRILYCRLTRKALDQIRHEHEAVLDQI 146

Query: 148 PDAVTRLRKLLMMSNNGRLRLEHIRIARSEFGLPDDFEYSVVLKHPQFFRLFDAKETRNK 207
           PDAVTRLRKL+MMSN GR+RLEH+RIAR+EFGLP+DFEYSV+LKHPQFFRL D +ETR+K
Sbjct: 147 PDAVTRLRKLVMMSNTGRIRLEHVRIARTEFGLPEDFEYSVILKHPQFFRLIDGEETRDK 206

Query: 208 YIEIVERDPSLTVCAIERARERVYREKGSDAEDIRFSFVVNFPPGFKIGKYFRIAMWKWQ 267
           YIEIVE+DP+L++CAIER RE  YR KG DAED+RFSFVVNFPPGFKIGKYFRIA+WKWQ
Sbjct: 207 YIEIVEKDPNLSICAIERVREIEYRTKGIDAEDVRFSFVVNFPPGFKIGKYFRIAVWKWQ 266

Query: 268 RLPYWSPYEDISEYDMRSIEAQKRMEKRAVATIHEMLSLTVEKKITLERIAHFRLAMYLP 327
           RLPYWSPYEDIS YD+RS+EAQ R+EKR+VA IHE+LSLTVEKKITLERIAHFR  M LP
Sbjct: 267 RLPYWSPYEDISGYDLRSMEAQNRLEKRSVACIHELLSLTVEKKITLERIAHFRNVMNLP 326

Query: 328 KKLKDFLLQHQGIFYISTRGNHGKLHTVFLREGYRRSELVEPNDVYLARRQLAELVLLSP 387
           KKLK+FLLQHQGIFYISTRGN+GKLHTVFLREGY+R ELVEPNDVYLARR+LAELVL+SP
Sbjct: 327 KKLKEFLLQHQGIFYISTRGNYGKLHTVFLREGYKRGELVEPNDVYLARRRLAELVLMSP 386

Query: 388 RKATVDRELVGYR 399
           RKA VD ELV YR
Sbjct: 387 RKAKVDAELVRYR 399

[Close]

BLAST of CsaV3_5G005780 vs. ExPASy Swiss-Prot
Match: B6TTV8 (Protein WHAT'S THIS FACTOR 1, chloroplastic OS=Zea mays OX=4577 GN=WTF1 PE=1 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 3.8e-39
Identity = 131/426 (30.75%), Postives = 219/426 (51.41%), Query Frame = 0


Query: 45  LQRVRDHGYDNYMEVEKKTRKVLKFQELILSQFNQTIPVSRLDILARRLGF-KQHEAGAF 104
           ++R ++  +D  ++ +KK + VLK + ++++Q ++ + +  L    R LG  ++    A 
Sbjct: 55  VKRRKEAPFDTVIQRDKKLKLVLKLRNILVAQPDRVMSLRELGRFRRDLGLTRKRRLIAL 114

Query: 105 VLKFPHVFEIYEHPVQRILYCRLTRKAHLQIEQQKRAVIAQIPDAVTRLRKLLMMSNNGR 164
           + +FP VF++ E  V  + + RLT  A      + R        AV +LRKLLMMS   R
Sbjct: 115 LRRFPGVFDVVEEGVYSLRF-RLTPAAERLYLDELRLRNESEGLAVAKLRKLLMMSQEKR 174

Query: 165 LRLEHIRIARSEFGLPDDFEYSVVLKHPQFFRLFDAKETRNKYIEIVERDPSLTVCAIER 224
           + +E +   + + GLP +F  +V L++PQ+FR+   +  R   +E+   DP L V A E 
Sbjct: 175 ILIEKVAHLKHDLGLPPEFRDTVCLRYPQYFRV--VRMDRGPALELTHWDPELAVSAAEL 234

Query: 225 ARERVYREKGSDAED--------IRFSFVVNFPPGFKI--GKYFRIAMWKWQRLPYWSPY 284
           A E     +  +AE+        ++F+  V  P G K+  G+  RIA +K   +PY SPY
Sbjct: 235 AEE---ESRAREAEERNLIIDRPLKFN-RVRLPKGLKLTRGEARRIARFK--EMPYISPY 294

Query: 285 EDISEYDMRSIEAQKRMEKRAVATIHEMLSLTVEKKITLERIAHFRLAMYLPKKLKDFLL 344
            D S   +RS   +K  EK A   +HE+LSLTVEK+  ++ + HFR      + L+  ++
Sbjct: 295 ADFSH--LRSGSDEK--EKHACGVVHEILSLTVEKRTLVDHLTHFREEFRFSQSLRGMII 354

Query: 345 QHQGIFYISTRGNHGKLHTVFLREGYRRSELVEPNDVYLARRQLAELVLLS--PRKATVD 404
           +H  +FY+S +G+     +VFLRE Y+ S+LVE N + L + ++  LV +   PR+A   
Sbjct: 355 RHPDMFYVSFKGDR---DSVFLREAYKDSQLVEKNQLVLLKEKMRALVAVPRFPRRAA-- 414

Query: 405 RELVGYRRERVGYDMENSRTDYVEDKSVDFGVENKGNVRDVLDSDIGSDVESDFSDDDNH 458
              VG   E  G +      D V D+  D   E   ++ D++    G   ++D+   D  
Sbjct: 415 ---VGTGEEAEGMNGSLQSRDQVSDEEYDDEDEGLSDMEDLISELSGGKSDADYEWGDGW 459

[Close]

BLAST of CsaV3_5G005780 vs. ExPASy Swiss-Prot
Match: Q65XL5 (Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0571100 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.5e-38
Identity = 137/433 (31.64%), Postives = 224/433 (51.73%), Query Frame = 0


Query: 45  LQRVRDHGYDNYMEVEKKTRKVLKFQELILSQFNQTIPVSRLDILARRLGF-KQHEAGAF 104
           ++R ++  +DN ++ +KK + VLK + +++S  ++ + +  L    R LG  ++    A 
Sbjct: 61  VKRRKEIPFDNVIQRDKKLKLVLKLRNILVSNPDRVMSLRDLGRFRRDLGLTRKRRLIAL 120

Query: 105 VLKFPHVFEIYEHPVQRILYCRLTRKAHLQIEQQKRAVIAQIPDAVTRLRKLLMMSNNGR 164
           + +FP VFE+ E  V  + + RLT  A      +          AVT+LRKLLMMS + R
Sbjct: 121 LKRFPGVFEVVEEGVYSLRF-RLTPAAERLYLDELHLKNESEGLAVTKLRKLLMMSQDKR 180

Query: 165 LRLEHIRIARSEFGLPDDFEYSVVLKHPQFFRLFDAKETRNKYIEIVERDPSLTVCAIE- 224
           + +E I   +++ GLP +F  ++ L++PQ+FR+   +  R   +E+   DP L V A E 
Sbjct: 181 ILIEKIAHLKNDLGLPPEFRDTICLRYPQYFRV--VQMDRGPGLELTHWDPELAVSAAEV 240

Query: 225 -----RARERVYREKGSDAEDIRFSFVVNFPPGFKI--GKYFRIAMWKWQRLPYWSPYED 284
                RARE   R    D   ++F+  V  P G K+  G+  R+A +K   +PY SPY D
Sbjct: 241 AEEENRAREEQERNLIID-RPLKFN-RVKLPQGLKLSRGEARRVAQFK--EMPYISPYSD 300

Query: 285 ISEYDMRSIEAQKRMEKRAVATIHEMLSLTVEKKITLERIAHFRLAMYLPKKLKDFLLQH 344
            S   +RS  A+K  EK A   +HE+LSLT+EK+  ++ + HFR      + L+  L++H
Sbjct: 301 FSH--LRSGSAEK--EKHACGVVHEILSLTLEKRTLVDHLTHFREEFRFSQSLRGMLIRH 360

Query: 345 QGIFYISTRGNHGKLHTVFLREGYRRSELVEPNDVYLARRQLAELVLLS--PRKAT---- 404
             +FY+S +G+     +VFLRE Y+ S+LVE + + L + ++  LV +   PR+      
Sbjct: 361 PDMFYVSLKGDR---DSVFLREAYKNSQLVEKSKLVLLKEKMRALVAVPRFPRRGVPATS 420

Query: 405 --VDRELVGYRRERVGYDMENSRTDYVEDKSVDFGVENKGNVRDV----LDSDIGSDVES 455
              DR     +    G D+E+   + + D   D   E  G   D      D  +G + +S
Sbjct: 421 EEADRTNGAAQMLSEGSDVEDDEDEGLSDME-DLISEISGGKSDTDYHWGDGWVGENDDS 478

[Close]

BLAST of CsaV3_5G005780 vs. ExPASy Swiss-Prot
Match: A0MFS5 (Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g01037 PE=3 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.7e-34
Identity = 120/417 (28.78%), Postives = 217/417 (52.04%), Query Frame = 0


Query: 45  LQRVRDHGYDNYMEVEKKTRKVLKFQELILSQFNQTIPVSRLDILARRLGFKQHEAG-AF 104
           ++R ++  +D+ ++ +KK + VL  +++++SQ ++ + +  L    R LG K+     A 
Sbjct: 76  VKRRKELTFDSVVQRDKKLKLVLNIRKILVSQPDRMMSLRGLGKYRRDLGLKKRRRFIAL 135

Query: 105 VLKFPHVFEIYEHPVQRILYCRLTRKAHLQIEQQKRAVIAQIPDA-VTRLRKLLMMSNNG 164
           + K+P VFEI E     + +   +    L +++ +  +  ++ D  V +LRKL+MMS + 
Sbjct: 136 LRKYPGVFEIVEEGAYSLRFKMTSEAERLYLDEMR--IRNELEDVLVVKLRKLVMMSIDK 195

Query: 165 RLRLEHIRIARSEFGLPDDFEYSVVLKHPQFFRLFDAKETRNKYIEIVERDPSLTVCAIE 224
           R+ LE I   +++ GLP +F  ++  ++PQ+FR+      R   +E+   DP L V A E
Sbjct: 196 RILLEKISHLKTDLGLPLEFRDTICQRYPQYFRV--VPTPRGPALELTHWDPELAVSAAE 255

Query: 225 ------RARERVYREKGSDAEDIRFSFVVNFPPGFKIGKYFRIAMWKWQRLPYWSPYEDI 284
                 R RE   R    D    +F+  V  P G  + K     + +++ + Y SPY+D 
Sbjct: 256 LSEDDNRTRESEERNLIIDRPP-KFN-RVKLPRGLNLSKSETRKISQFRDMQYISPYKDF 315

Query: 285 SEYDMRSIEAQKRMEKRAVATIHEMLSLTVEKKITLERIAHFRLAMYLPKKLKDFLLQHQ 344
           S     ++E     EK A   IHE+LSLT EK+  ++ + HFR      ++L+  L++H 
Sbjct: 316 SHLRSGTLE----KEKHACGVIHELLSLTTEKRTLVDHLTHFREEFRFSQQLRGMLIRHP 375

Query: 345 GIFYISTRGNHGKLHTVFLREGYRRSELVEPNDVYLARRQLAELVLLS--PRKATVDREL 404
            +FY+S +G      +VFLRE YR SEL++ + + L + ++  LV +   PR+       
Sbjct: 376 DLFYVSLKGER---DSVFLREAYRNSELIDKDPLTLVKEKMRALVSVPRFPRRG------ 435

Query: 405 VGYRRERVGYDMENSRTDY-VEDKSVDFGVENKGNVRDVLD-SDIGSDVESDFSDDD 450
            G R++  G ++E   +D   E++  +   E   +V   L+  D G+D + D++DD+
Sbjct: 436 -GPRKDEEGREVEIDGSDADGEEEEEESDAEEWSDVDGYLEGEDGGNDDDGDWTDDE 472

[Close]

BLAST of CsaV3_5G005780 vs. ExPASy Swiss-Prot
Match: Q9ZUZ6 (Protein WHAT'S THIS FACTOR 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=WTF9 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.2e-21
Identity = 109/389 (28.02%), Postives = 179/389 (46.02%), Query Frame = 0


Query: 20  KTRAFFLFNLTLSRSMSQSTSIPKNLQRVRDHGYDNYMEV--EKKTRKVLKFQELILSQF 79
           KT A    NLT  R     T +   ++  RD  +DN   +    + + V+  +  I+ + 
Sbjct: 9   KTVASSCTNLTQKR-----TYVDVYMKWKRDPYFDNIEHILRSSQLKSVVSLKNCIVQEP 68

Query: 80  NQTIPVSRLDILARRLGFKQHEAGAFVLKFPHVFEIYEHPVQRILYCRLTRKAHLQIEQQ 139
           N+ IP+S +    R+      +   F+ KFP +FE +  P   + + RLT +A  ++++Q
Sbjct: 69  NRCIPISAISKKTRQFDVST-KIAHFLRKFPSIFEEFVGPEYNLPWFRLTPEA-TELDRQ 128

Query: 140 KRAVI-AQIPDAVTRLRKLLMMSNNGRLRLEHIRIARSEFGLPDDFEYSVVLKHPQFFRL 199
           +R V      D   RL+KL++MS +  L L  ++  +   GLPDD+     +     FR 
Sbjct: 129 ERVVYQTSADDLRDRLKKLILMSKDNVLPLSIVQGMKWYLGLPDDYLQFPDMNLDSSFRF 188

Query: 200 FDAKE-TRNKYIEIVERDPSLTVCAIERARERVYREKGS-DAEDIRFSFVVNFP-PGFKI 259
            D ++  +   ++    D  L+V      ++R    +G    E+I F     FP  G ++
Sbjct: 189 VDMEDGVKGLAVDYNGGDKVLSVLQKNAMKKR----RGEVSLEEIEFPL---FPSKGCRL 248

Query: 260 GKYFRIAMWKWQRLPYWSPYEDISEYDMRSIEAQKRMEKRAVATIHEMLSLTVEKKITLE 319
                  + ++Q+LPY SPY+D S  D  S  A    EKR V  +HE+L L VE     +
Sbjct: 249 RVKIEDWLMEFQKLPYVSPYDDYSCLDPSSDIA----EKRVVGFLHELLCLFVEHSAERK 308

Query: 320 RIAHFRLAMYLPKKLKDFLLQHQGIFYISTRGNHGKLHTVFLREGYRRSELVEPNDVYLA 379
           ++   +    LP+K+     +H  IFY+S +    K  T  LRE YR    VE + V   
Sbjct: 309 KLLCLKKHFGLPQKVHKAFERHPQIFYLSMK---NKTCTAILREPYRDKASVETHPVLGV 368

Query: 380 RRQLAELVLLSPRKATVDRELVGYRRERV 403
           R++  +L+  S       R   G+R E V
Sbjct: 369 RKKYIQLMKNSELILKSRRNSFGFRDEGV 376

[Close]

BLAST of CsaV3_5G005780 vs. ExPASy TrEMBL
Match: A0A1S4DS47 (protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo OX=3656 GN=LOC103504628 PE=4 SV=1)

HSP 1 Score: 876.3 bits (2263), Expect = 5.6e-251
Identity = 445/462 (96.32%), Postives = 451/462 (97.62%), Query Frame = 0


Query: 1   MLIFFGYHPKSLTSNFTSFKTRAFFLFNLTLSRSMSQSTSIPKNLQRVRDHGYDNYMEVE 60
           MLIFFGYHPK LTSNFTSFKTRA+FLFN T SRSMSQSTSIPKNLQRVRDHGYDNYMEVE
Sbjct: 1   MLIFFGYHPKFLTSNFTSFKTRAYFLFNFTRSRSMSQSTSIPKNLQRVRDHGYDNYMEVE 60

Query: 61  KKTRKVLKFQELILSQFNQTIPVSRLDILARRLGFKQHEAGAFVLKFPHVFEIYEHPVQR 120
           KK RKVLKFQ+LILSQFNQTIPVSRLDILARRLGFKQHEAGAFVLKFPHVFEIYEHPVQR
Sbjct: 61  KKIRKVLKFQDLILSQFNQTIPVSRLDILARRLGFKQHEAGAFVLKFPHVFEIYEHPVQR 120

Query: 121 ILYCRLTRKAHLQIEQQKRAVIAQIPDAVTRLRKLLMMSNNGRLRLEHIRIARSEFGLPD 180
           ILYCRLTRKAHLQIEQQKRAVIAQIPDAVTRLRKLLMMSN GRLRLEHIRIARSEFGLPD
Sbjct: 121 ILYCRLTRKAHLQIEQQKRAVIAQIPDAVTRLRKLLMMSNKGRLRLEHIRIARSEFGLPD 180

Query: 181 DFEYSVVLKHPQFFRLFDAKETRNKYIEIVERDPSLTVCAIERARERVYREKGSDAEDIR 240
           DFEYSVVLKHPQFFRLFDAKETRNKYIEIVERDPSLTVCAIERARERVYRE+GSDAEDIR
Sbjct: 181 DFEYSVVLKHPQFFRLFDAKETRNKYIEIVERDPSLTVCAIERARERVYREQGSDAEDIR 240

Query: 241 FSFVVNFPPGFKIGKYFRIAMWKWQRLPYWSPYEDISEYDMRSIEAQKRMEKRAVATIHE 300
           FSF+VNFPPGFKIGKYFRIAMWKWQRLPYWSPYEDISEYDMRSIEAQKRMEKRAVATIHE
Sbjct: 241 FSFIVNFPPGFKIGKYFRIAMWKWQRLPYWSPYEDISEYDMRSIEAQKRMEKRAVATIHE 300

Query: 301 MLSLTVEKKITLERIAHFRLAMYLPKKLKDFLLQHQGIFYISTRGNHGKLHTVFLREGYR 360
           MLSLTVEKK+TLERIAHFRLAM LPKKLKDFLLQHQGIFYISTRGNHGKLHTVFLREGYR
Sbjct: 301 MLSLTVEKKLTLERIAHFRLAMNLPKKLKDFLLQHQGIFYISTRGNHGKLHTVFLREGYR 360

Query: 361 RSELVEPNDVYLARRQLAELVLLSPRKATVDRELVGYRRERVGYDMENSRTDYVEDKSVD 420
           R ELVEPNDVYLARR LAELVLLSPRKA +DRELVGYRRERVGYDMEN RTDYVEDKS D
Sbjct: 361 RGELVEPNDVYLARRHLAELVLLSPRKAKLDRELVGYRRERVGYDMENCRTDYVEDKSDD 420

Query: 421 FGVENKGNVRDVLDSDIGSDVESDFSDDDNHSVEVEDVDITE 463
           FGVENKGNVRDVLDSDIGSDVESDFSDDDNHSVEVEDVDITE
Sbjct: 421 FGVENKGNVRDVLDSDIGSDVESDFSDDDNHSVEVEDVDITE 462

[Close]

BLAST of CsaV3_5G005780 vs. ExPASy TrEMBL
Match: A0A0A0KLD1 (PORR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G173460 PE=4 SV=1)

HSP 1 Score: 842.4 bits (2175), Expect = 8.9e-241
Identity = 428/428 (100.00%), Postives = 428/428 (100.00%), Query Frame = 0


Query: 35  MSQSTSIPKNLQRVRDHGYDNYMEVEKKTRKVLKFQELILSQFNQTIPVSRLDILARRLG 94
           MSQSTSIPKNLQRVRDHGYDNYMEVEKKTRKVLKFQELILSQFNQTIPVSRLDILARRLG
Sbjct: 1   MSQSTSIPKNLQRVRDHGYDNYMEVEKKTRKVLKFQELILSQFNQTIPVSRLDILARRLG 60

Query: 95  FKQHEAGAFVLKFPHVFEIYEHPVQRILYCRLTRKAHLQIEQQKRAVIAQIPDAVTRLRK 154
           FKQHEAGAFVLKFPHVFEIYEHPVQRILYCRLTRKAHLQIEQQKRAVIAQIPDAVTRLRK
Sbjct: 61  FKQHEAGAFVLKFPHVFEIYEHPVQRILYCRLTRKAHLQIEQQKRAVIAQIPDAVTRLRK 120

Query: 155 LLMMSNNGRLRLEHIRIARSEFGLPDDFEYSVVLKHPQFFRLFDAKETRNKYIEIVERDP 214
           LLMMSNNGRLRLEHIRIARSEFGLPDDFEYSVVLKHPQFFRLFDAKETRNKYIEIVERDP
Sbjct: 121 LLMMSNNGRLRLEHIRIARSEFGLPDDFEYSVVLKHPQFFRLFDAKETRNKYIEIVERDP 180

Query: 215 SLTVCAIERARERVYREKGSDAEDIRFSFVVNFPPGFKIGKYFRIAMWKWQRLPYWSPYE 274
           SLTVCAIERARERVYREKGSDAEDIRFSFVVNFPPGFKIGKYFRIAMWKWQRLPYWSPYE
Sbjct: 181 SLTVCAIERARERVYREKGSDAEDIRFSFVVNFPPGFKIGKYFRIAMWKWQRLPYWSPYE 240

Query: 275 DISEYDMRSIEAQKRMEKRAVATIHEMLSLTVEKKITLERIAHFRLAMYLPKKLKDFLLQ 334
           DISEYDMRSIEAQKRMEKRAVATIHEMLSLTVEKKITLERIAHFRLAMYLPKKLKDFLLQ
Sbjct: 241 DISEYDMRSIEAQKRMEKRAVATIHEMLSLTVEKKITLERIAHFRLAMYLPKKLKDFLLQ 300

Query: 335 HQGIFYISTRGNHGKLHTVFLREGYRRSELVEPNDVYLARRQLAELVLLSPRKATVDREL 394
           HQGIFYISTRGNHGKLHTVFLREGYRRSELVEPNDVYLARRQLAELVLLSPRKATVDREL
Sbjct: 301 HQGIFYISTRGNHGKLHTVFLREGYRRSELVEPNDVYLARRQLAELVLLSPRKATVDREL 360

Query: 395 VGYRRERVGYDMENSRTDYVEDKSVDFGVENKGNVRDVLDSDIGSDVESDFSDDDNHSVE 454
           VGYRRERVGYDMENSRTDYVEDKSVDFGVENKGNVRDVLDSDIGSDVESDFSDDDNHSVE
Sbjct: 361 VGYRRERVGYDMENSRTDYVEDKSVDFGVENKGNVRDVLDSDIGSDVESDFSDDDNHSVE 420

Query: 455 VEDVDITE 463
           VEDVDITE
Sbjct: 421 VEDVDITE 428

[Close]

BLAST of CsaV3_5G005780 vs. ExPASy TrEMBL
Match: A0A5D3BLZ6 (Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1728G00370 PE=4 SV=1)

HSP 1 Score: 818.9 bits (2114), Expect = 1.1e-233
Identity = 415/428 (96.96%), Postives = 420/428 (98.13%), Query Frame = 0


Query: 35  MSQSTSIPKNLQRVRDHGYDNYMEVEKKTRKVLKFQELILSQFNQTIPVSRLDILARRLG 94
           MSQSTSIPKNLQRVRDHGYDNYMEVEKK RKVLKFQ+LILSQFNQTIPVSRLDILARRLG
Sbjct: 1   MSQSTSIPKNLQRVRDHGYDNYMEVEKKIRKVLKFQDLILSQFNQTIPVSRLDILARRLG 60

Query: 95  FKQHEAGAFVLKFPHVFEIYEHPVQRILYCRLTRKAHLQIEQQKRAVIAQIPDAVTRLRK 154
           FKQHEAGAFVLKFPHVFEIYEHPVQRILYCRLTRKAHLQIEQQKRAVIAQIPDAVTRLRK
Sbjct: 61  FKQHEAGAFVLKFPHVFEIYEHPVQRILYCRLTRKAHLQIEQQKRAVIAQIPDAVTRLRK 120

Query: 155 LLMMSNNGRLRLEHIRIARSEFGLPDDFEYSVVLKHPQFFRLFDAKETRNKYIEIVERDP 214
           LLMMSN GRLRLEHIRIARSEFGLPDDFEYSVVLKHPQFFRLFDAKETRNKYIEIVERDP
Sbjct: 121 LLMMSNKGRLRLEHIRIARSEFGLPDDFEYSVVLKHPQFFRLFDAKETRNKYIEIVERDP 180

Query: 215 SLTVCAIERARERVYREKGSDAEDIRFSFVVNFPPGFKIGKYFRIAMWKWQRLPYWSPYE 274
           SLTVCAIERARERVYRE+GSDAEDIRFSF+VNFPPGFKIGKYFRIAMWKWQRLPYWSPYE
Sbjct: 181 SLTVCAIERARERVYREQGSDAEDIRFSFIVNFPPGFKIGKYFRIAMWKWQRLPYWSPYE 240

Query: 275 DISEYDMRSIEAQKRMEKRAVATIHEMLSLTVEKKITLERIAHFRLAMYLPKKLKDFLLQ 334
           DISEYDMRSIEAQKRMEKRAVATIHEMLSLTVEKK+TLERIAHFRLAM LPKKLKDFLLQ
Sbjct: 241 DISEYDMRSIEAQKRMEKRAVATIHEMLSLTVEKKLTLERIAHFRLAMNLPKKLKDFLLQ 300

Query: 335 HQGIFYISTRGNHGKLHTVFLREGYRRSELVEPNDVYLARRQLAELVLLSPRKATVDREL 394
           HQGIFYISTRGNHGKLHTVFLREGYRR ELVEPNDVYLARR LAELVLLSPRKA +DREL
Sbjct: 301 HQGIFYISTRGNHGKLHTVFLREGYRRGELVEPNDVYLARRHLAELVLLSPRKAKLDREL 360

Query: 395 VGYRRERVGYDMENSRTDYVEDKSVDFGVENKGNVRDVLDSDIGSDVESDFSDDDNHSVE 454
           VGYRRERVGYDMEN RTDYVEDKS DFGVENKGNVRDVLDSDIGSDVESDFSDDDNHSVE
Sbjct: 361 VGYRRERVGYDMENCRTDYVEDKSDDFGVENKGNVRDVLDSDIGSDVESDFSDDDNHSVE 420

Query: 455 VEDVDITE 463
           VEDVDITE
Sbjct: 421 VEDVDITE 428

[Close]

BLAST of CsaV3_5G005780 vs. ExPASy TrEMBL
Match: A0A5A7UNY2 (Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold231G001020 PE=4 SV=1)

HSP 1 Score: 804.3 bits (2076), Expect = 2.7e-229
Identity = 406/420 (96.67%), Postives = 412/420 (98.10%), Query Frame = 0


Query: 35  MSQSTSIPKNLQRVRDHGYDNYMEVEKKTRKVLKFQELILSQFNQTIPVSRLDILARRLG 94
           MSQSTSIPKNLQRVRDHGYDNYMEVEKK RKVLKFQ+LILSQFNQTIPVSRLDILARRLG
Sbjct: 1   MSQSTSIPKNLQRVRDHGYDNYMEVEKKIRKVLKFQDLILSQFNQTIPVSRLDILARRLG 60

Query: 95  FKQHEAGAFVLKFPHVFEIYEHPVQRILYCRLTRKAHLQIEQQKRAVIAQIPDAVTRLRK 154
           FKQHEAGAFVLKFPHVFEIYEHPVQRILYCRLTRKAHLQIEQQKRAVIAQIPDAVTRLRK
Sbjct: 61  FKQHEAGAFVLKFPHVFEIYEHPVQRILYCRLTRKAHLQIEQQKRAVIAQIPDAVTRLRK 120

Query: 155 LLMMSNNGRLRLEHIRIARSEFGLPDDFEYSVVLKHPQFFRLFDAKETRNKYIEIVERDP 214
           LLMMSN GRLRLEHIRIARSEFGLPDDFEYSVVLKHPQFFRLFDAKETRNKYIEIVERDP
Sbjct: 121 LLMMSNKGRLRLEHIRIARSEFGLPDDFEYSVVLKHPQFFRLFDAKETRNKYIEIVERDP 180

Query: 215 SLTVCAIERARERVYREKGSDAEDIRFSFVVNFPPGFKIGKYFRIAMWKWQRLPYWSPYE 274
           SLTVCAIERARERVYRE+GSDAEDIRFSF+VNFPPGFKIGKYFRIAMWKWQRLPYWSPYE
Sbjct: 181 SLTVCAIERARERVYREQGSDAEDIRFSFIVNFPPGFKIGKYFRIAMWKWQRLPYWSPYE 240

Query: 275 DISEYDMRSIEAQKRMEKRAVATIHEMLSLTVEKKITLERIAHFRLAMYLPKKLKDFLLQ 334
           DISEYDMRSIEAQKRMEKRAVATIHEMLSLTVEKK+TLERIAHFRLAM LPKKLKDFLLQ
Sbjct: 241 DISEYDMRSIEAQKRMEKRAVATIHEMLSLTVEKKLTLERIAHFRLAMNLPKKLKDFLLQ 300

Query: 335 HQGIFYISTRGNHGKLHTVFLREGYRRSELVEPNDVYLARRQLAELVLLSPRKATVDREL 394
           HQGIFYISTRGNHGKLHTVFLREGYRR +LVEPNDVYLARR LAELVLLSPRKA +DREL
Sbjct: 301 HQGIFYISTRGNHGKLHTVFLREGYRRGDLVEPNDVYLARRHLAELVLLSPRKAKLDREL 360

Query: 395 VGYRRERVGYDMENSRTDYVEDKSVDFGVENKGNVRDVLDSDIGSDVESDFSDDDNHSVE 454
           VGYRRERVGYDMEN RTDYVEDKS DFGVENKGNVRDVLDSDIGSDVESDFSDDDNHSVE
Sbjct: 361 VGYRRERVGYDMENCRTDYVEDKSDDFGVENKGNVRDVLDSDIGSDVESDFSDDDNHSVE 420

[Close]

BLAST of CsaV3_5G005780 vs. ExPASy TrEMBL
Match: A0A6J1EMT6 (protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucurbita moschata OX=3662 GN=LOC111435790 PE=4 SV=1)

HSP 1 Score: 775.4 bits (2001), Expect = 1.3e-220
Identity = 394/466 (84.55%), Postives = 430/466 (92.27%), Query Frame = 0


Query: 1   MLIFFGYHPKSLTSNFTSFKTRAFFLFNLTLSRSMSQSTSIPKNLQRVRDHGYDNYMEVE 60
           M+IF+GY  K  ++ FT+FKT A+ L N + SRSMSQSTSIP+ L+RVRDHGYDNYM+VE
Sbjct: 1   MMIFYGYCSKFRSTKFTAFKTTAYVLCNFSRSRSMSQSTSIPRKLERVRDHGYDNYMDVE 60

Query: 61  KKTRKVLKFQELILSQFNQTIPVSRLDILARRLGFKQHEAGAFVLKFPHVFEIYEHPVQR 120
           KKTRKVLKFQ+LIL+Q NQTIPVSRLD+ ARRLGFKQHEAGAFVLKFPHVFEIYEHPVQR
Sbjct: 61  KKTRKVLKFQDLILTQINQTIPVSRLDVSARRLGFKQHEAGAFVLKFPHVFEIYEHPVQR 120

Query: 121 ILYCRLTRKAHLQIEQQKRAVIAQIPDAVTRLRKLLMMSNNGRLRLEHIRIARSEFGLPD 180
           ILYCRLTRKAHLQIEQ+K+AVIAQIPDAVTRLRKLLMMSNNGRLRLEHIRIARSEFGLPD
Sbjct: 121 ILYCRLTRKAHLQIEQEKQAVIAQIPDAVTRLRKLLMMSNNGRLRLEHIRIARSEFGLPD 180

Query: 181 DFEYSVVLKHPQFFRLFDAKETRNKYIEIVERDPSLTVCAIERARERVYREKGSDAEDIR 240
           DFEYSVVLK+PQFFRLFDAKETRNKYIEIVERDP+LTVCAIE+ARERVYREKGSDAEDIR
Sbjct: 181 DFEYSVVLKYPQFFRLFDAKETRNKYIEIVERDPNLTVCAIEKARERVYREKGSDAEDIR 240

Query: 241 FSFVVNFPPGFKIGKYFRIAMWKWQRLPYWSPYEDISEYDMRSIEAQKRMEKRAVATIHE 300
           FSF+VNFPPGFKIGKY+RIA+WKWQRLPYWSPYED+SEYDMRSIEAQKRMEKRAVATIHE
Sbjct: 241 FSFIVNFPPGFKIGKYYRIAVWKWQRLPYWSPYEDVSEYDMRSIEAQKRMEKRAVATIHE 300

Query: 301 MLSLTVEKKITLERIAHFRLAMYLPKKLKDFLLQHQGIFYISTRGNHGKLHTVFLREGYR 360
           ML LTVEKKI+LERIAHFRLAM LPKKLKDFLLQHQGIFYISTRGNHGKLHT+FLRE YR
Sbjct: 301 MLCLTVEKKISLERIAHFRLAMDLPKKLKDFLLQHQGIFYISTRGNHGKLHTIFLREAYR 360

Query: 361 RSELVEPNDVYLARRQLAELVLLSPRKATVDRELVGYRRERVGYDMENSRTDYVEDKSVD 420
           R EL+EPNDVYLARR LAELVLLSPRKA ++RELVGYRRERVGYDME+ R D ++    D
Sbjct: 361 RGELIEPNDVYLARRTLAELVLLSPRKAKLNRELVGYRRERVGYDMESFRPDKLD----D 420

Query: 421 FGVENKGNVRDVLDSDIGSDVESDFSDDDNHSV----EVEDVDITE 463
           +G  ++GNVRDVLDSD+GSD ESDFSDD N SV    E EDV+IT+
Sbjct: 421 YGAGDRGNVRDVLDSDVGSDSESDFSDDSNRSVDETFEEEDVNITK 462

[Close]

BLAST of CsaV3_5G005780 vs. TAIR 10
Match: AT4G33495.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 599.4 bits (1544), Expect = 2.5e-171
Identity = 299/373 (80.16%), Postives = 330/373 (88.47%), Query Frame = 0


Query: 28  NLTLSRSMSQSTSIPKNLQRVRDHGYDNYMEVEKKTRKVLKFQELILSQFNQTIPVSRLD 87
           NL L +  SQST+IPK   RVRDHGYDNYMEVEKK RKV+KF  LILSQ N TI +S LD
Sbjct: 27  NLILVKPFSQSTTIPKKQDRVRDHGYDNYMEVEKKIRKVVKFHSLILSQPNHTIAISLLD 86

Query: 88  ILARR--LGFKQHEAGAFVLKFPHVFEIYEHPVQRILYCRLTRKAHLQIEQQKRAVIAQI 147
            LARR  LGFKQHE GAF+LKFPHVFEIYEHPVQRILYCRLTRKA  QI  +  AV+ QI
Sbjct: 87  TLARRLGLGFKQHEPGAFLLKFPHVFEIYEHPVQRILYCRLTRKALDQIRHEHEAVLDQI 146

Query: 148 PDAVTRLRKLLMMSNNGRLRLEHIRIARSEFGLPDDFEYSVVLKHPQFFRLFDAKETRNK 207
           PDAVTRLRKL+MMSN GR+RLEH+RIAR+EFGLP+DFEYSV+LKHPQFFRL D +ETR+K
Sbjct: 147 PDAVTRLRKLVMMSNTGRIRLEHVRIARTEFGLPEDFEYSVILKHPQFFRLIDGEETRDK 206

Query: 208 YIEIVERDPSLTVCAIERARERVYREKGSDAEDIRFSFVVNFPPGFKIGKYFRIAMWKWQ 267
           YIEIVE+DP+L++CAIER RE  YR KG DAED+RFSFVVNFPPGFKIGKYFRIA+WKWQ
Sbjct: 207 YIEIVEKDPNLSICAIERVREIEYRTKGIDAEDVRFSFVVNFPPGFKIGKYFRIAVWKWQ 266

Query: 268 RLPYWSPYEDISEYDMRSIEAQKRMEKRAVATIHEMLSLTVEKKITLERIAHFRLAMYLP 327
           RLPYWSPYEDIS YD+RS+EAQ R+EKR+VA IHE+LSLTVEKKITLERIAHFR  M LP
Sbjct: 267 RLPYWSPYEDISGYDLRSMEAQNRLEKRSVACIHELLSLTVEKKITLERIAHFRNVMNLP 326

Query: 328 KKLKDFLLQHQGIFYISTRGNHGKLHTVFLREGYRRSELVEPNDVYLARRQLAELVLLSP 387
           KKLK+FLLQHQGIFYISTRGN+GKLHTVFLREGY+R ELVEPNDVYLARR+LAELVL+SP
Sbjct: 327 KKLKEFLLQHQGIFYISTRGNYGKLHTVFLREGYKRGELVEPNDVYLARRRLAELVLMSP 386

Query: 388 RKATVDRELVGYR 399
           RKA VD ELV YR
Sbjct: 387 RKAKVDAELVRYR 399

[Close]

BLAST of CsaV3_5G005780 vs. TAIR 10
Match: AT5G45790.2 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 232.6 bits (592), Expect = 6.2e-61
Identity = 145/382 (37.96%), Postives = 224/382 (58.64%), Query Frame = 0


Query: 47  RVRDHGYDNYMEVEKKTRKVLKFQELILSQFNQTIPVSRLDILAR--RLGFKQHEAGAFV 106
           R RDH  D  +   +K   +L+  +L+ S+  +  P   L +++R   L       GAF+
Sbjct: 68  RTRDHQLDKIIPQIRKLNIILEISKLMSSK--KRGPFVSLQLMSRWKNLVGLNVNVGAFI 127

Query: 107 LKFPHVFEIYEHPVQRILYCRLTRKAHLQIEQQKRAVIAQIPDAVTRLRKLLMMSNNGRL 166
            K+PH FEI+ HP  + L C++T K  + I++++  V     DAV R++KLL++S +G L
Sbjct: 128 GKYPHAFEIFTHPFSKNLCCKITEKFKVLIDEEENVVRECEVDAVKRVKKLLLLSKHGVL 187

Query: 167 RLEHIRIARSEFGLPDDFEYSVVLKHPQFFRLFDAKETRNKYIEIVER-DPSLTVCAIER 226
           R+  +R+ R E GLP+DF  S++ K+   FRL D +      +E+V+R D SL V  +E 
Sbjct: 188 RVHALRLIRKELGLPEDFRDSILAKYSSEFRLVDLET-----LELVDRDDESLCVAKVEE 247

Query: 227 ARERVYREKGSDAEDIRFSFVVNFPPGFKIGKYFRIAMWKWQRLPYWSPYE--DISEYDM 286
            RE  YREK     +  ++F ++ P GFKI K FR  +  WQR+PY  PY+  +IS    
Sbjct: 248 WREVEYREKWLSKFETNYAFPIHLPTGFKIEKGFREELKNWQRVPYVKPYDRKEIS---- 307

Query: 287 RSIEAQKRMEKRAVATIHEMLSLTVEKKITLERIAHFRLAMYLPKKLKDFLLQHQGIFYI 346
           R +E   R EKR VA IHE+LSLTVEK + +ER+AHFR  + +   +++ +L+H GIFY+
Sbjct: 308 RGLE---RFEKRVVAVIHELLSLTVEKMVEVERLAHFRKDLGIEVNVREVILKHPGIFYV 367

Query: 347 STRGNHGKLHTVFLREGYRRSELVEPNDVYLARRQLAELVLLSPR--KATVDRELVGYRR 406
           ST+G+     T+FLRE Y +  L+EPN +Y  RR++ +LVLL  R  +  + RE   +R 
Sbjct: 368 STKGSS---QTLFLREAYSKGCLIEPNPIYNVRRKMLDLVLLKTRYSRMLLQREDETHRE 427

Query: 407 ERVGYDMENSRTDYVEDKSVDF 422
           E+    + +S  D+   +  D+
Sbjct: 428 EKSRDVLISSNEDWEGGRDGDW 432

[Close]

BLAST of CsaV3_5G005780 vs. TAIR 10
Match: AT5G45790.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 224.9 bits (572), Expect = 1.3e-58
Identity = 132/326 (40.49%), Postives = 200/326 (61.35%), Query Frame = 0


Query: 101 GAFVLKFPHVFEIYEHPVQRILYCRLTRKAHLQIEQQKRAVIAQIPDAVTRLRKLLMMSN 160
           GAF+ K+PH FEI+ HP  + L C++T K  + I++++  V     DAV R++KLL++S 
Sbjct: 37  GAFIGKYPHAFEIFTHPFSKNLCCKITEKFKVLIDEEENVVRECEVDAVKRVKKLLLLSK 96

Query: 161 NGRLRLEHIRIARSEFGLPDDFEYSVVLKHPQFFRLFDAKETRNKYIEIVER-DPSLTVC 220
           +G LR+  +R+ R E GLP+DF  S++ K+   FRL D +      +E+V+R D SL V 
Sbjct: 97  HGVLRVHALRLIRKELGLPEDFRDSILAKYSSEFRLVDLET-----LELVDRDDESLCVA 156

Query: 221 AIERARERVYREKGSDAEDIRFSFVVNFPPGFKIGKYFRIAMWKWQRLPYWSPYE--DIS 280
            +E  RE  YREK     +  ++F ++ P GFKI K FR  +  WQR+PY  PY+  +IS
Sbjct: 157 KVEEWREVEYREKWLSKFETNYAFPIHLPTGFKIEKGFREELKNWQRVPYVKPYDRKEIS 216

Query: 281 EYDMRSIEAQKRMEKRAVATIHEMLSLTVEKKITLERIAHFRLAMYLPKKLKDFLLQHQG 340
               R +E   R EKR VA IHE+LSLTVEK + +ER+AHFR  + +   +++ +L+H G
Sbjct: 217 ----RGLE---RFEKRVVAVIHELLSLTVEKMVEVERLAHFRKDLGIEVNVREVILKHPG 276

Query: 341 IFYISTRGNHGKLHTVFLREGYRRSELVEPNDVYLARRQLAELVLLSPR--KATVDRELV 400
           IFY+ST+G+     T+FLRE Y +  L+EPN +Y  RR++ +LVLL  R  +  + RE  
Sbjct: 277 IFYVSTKGSS---QTLFLREAYSKGCLIEPNPIYNVRRKMLDLVLLKTRYSRMLLQREDE 336

Query: 401 GYRRERVGYDMENSRTDYVEDKSVDF 422
            +R E+    + +S  D+   +  D+
Sbjct: 337 THREEKSRDVLISSNEDWEGGRDGDW 347

[Close]

BLAST of CsaV3_5G005780 vs. TAIR 10
Match: AT1G06440.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 218.4 bits (555), Expect = 1.2e-56
Identity = 138/360 (38.33%), Postives = 200/360 (55.56%), Query Frame = 0


Query: 36  SQSTSIPKNLQRVRDHGYDNYMEVEKKTRKVLKFQELILSQFNQTIPVSRLDILARRLGF 95
           S +TS      R RD  ++  M+  K   KV+  Q+L L+      P   ++ L+ RL  
Sbjct: 23  STTTSAQYVASRSRDPVFEKLMDKYKNLLKVIAIQDLTLANPTADPPSLSIEFLS-RLSQ 82

Query: 96  KQH---EAGAFVLKFPHVFEIYEHPVQRILYCRLTRKAHLQIEQQKRAVIAQIPDAVTRL 155
           K H    A +F+ K+PH+F +   PV+   +CRLT  A     Q+  A+ A +   V RL
Sbjct: 83  KLHLNRGAASFLRKYPHIFHVLYDPVKAEPFCRLTDVAMEISRQEALAITATLSLVVDRL 142

Query: 156 RKLLMMSNNGRLRLEHIRIARSEFGLPDDFEYSVVLKHPQFFRLFDAKETRNKYIEIVER 215
            +LL MS +  + L  +     E GLPDDFE SV+ K+P  F+L D  E+    +E+V+ 
Sbjct: 143 VRLLSMSISKSIPLRAVFKVWRELGLPDDFEDSVISKNPHLFKLSDGHESNTHILELVQE 202

Query: 216 DPSLT--VCAIERAR--ERVYREKGSDAEDIRFSFVVNFPPGFKIGKYFRIAMWKWQRLP 275
           +        A+E+ R  E    +   D  +I+FSF  ++PPG ++ K F+  + +WQRLP
Sbjct: 203 EEKRLEFEAAVEKWRVVECSKEDCSVDRTEIQFSFKHSYPPGMRLSKTFKAKVKEWQRLP 262

Query: 276 YWSPYEDISEYDMRSIEAQKRMEKRAVATIHEMLSLTVEKKITLERIAHFRLAMYLPKKL 335
           Y  PYED+     +S      +EKRAVA  HE L+LTVEK + +E+I+HFR    +   +
Sbjct: 263 YVGPYEDMVG-KKKSRSGVMGIEKRAVAIAHEFLNLTVEKMVEVEKISHFRKCFGIDLNI 322

Query: 336 KDFLLQHQGIFYISTRGNHGKLHTVFLREGYRRSELVEPNDVYLARRQLAELVLLSPRKA 389
           +D  L H G+FY+ST+   GK HTVFLRE Y R  L++PN VY ARR+L +LVLL    A
Sbjct: 323 RDLFLDHPGMFYVSTK---GKRHTVFLREAYERGRLIDPNPVYDARRKLLDLVLLGRHAA 377

[Close]

BLAST of CsaV3_5G005780 vs. TAIR 10
Match: AT4G01037.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 148.7 bits (374), Expect = 1.2e-35
Identity = 120/417 (28.78%), Postives = 217/417 (52.04%), Query Frame = 0


Query: 45  LQRVRDHGYDNYMEVEKKTRKVLKFQELILSQFNQTIPVSRLDILARRLGFKQHEAG-AF 104
           ++R ++  +D+ ++ +KK + VL  +++++SQ ++ + +  L    R LG K+     A 
Sbjct: 76  VKRRKELTFDSVVQRDKKLKLVLNIRKILVSQPDRMMSLRGLGKYRRDLGLKKRRRFIAL 135

Query: 105 VLKFPHVFEIYEHPVQRILYCRLTRKAHLQIEQQKRAVIAQIPDA-VTRLRKLLMMSNNG 164
           + K+P VFEI E     + +   +    L +++ +  +  ++ D  V +LRKL+MMS + 
Sbjct: 136 LRKYPGVFEIVEEGAYSLRFKMTSEAERLYLDEMR--IRNELEDVLVVKLRKLVMMSIDK 195

Query: 165 RLRLEHIRIARSEFGLPDDFEYSVVLKHPQFFRLFDAKETRNKYIEIVERDPSLTVCAIE 224
           R+ LE I   +++ GLP +F  ++  ++PQ+FR+      R   +E+   DP L V A E
Sbjct: 196 RILLEKISHLKTDLGLPLEFRDTICQRYPQYFRV--VPTPRGPALELTHWDPELAVSAAE 255

Query: 225 ------RARERVYREKGSDAEDIRFSFVVNFPPGFKIGKYFRIAMWKWQRLPYWSPYEDI 284
                 R RE   R    D    +F+  V  P G  + K     + +++ + Y SPY+D 
Sbjct: 256 LSEDDNRTRESEERNLIIDRPP-KFN-RVKLPRGLNLSKSETRKISQFRDMQYISPYKDF 315

Query: 285 SEYDMRSIEAQKRMEKRAVATIHEMLSLTVEKKITLERIAHFRLAMYLPKKLKDFLLQHQ 344
           S     ++E     EK A   IHE+LSLT EK+  ++ + HFR      ++L+  L++H 
Sbjct: 316 SHLRSGTLE----KEKHACGVIHELLSLTTEKRTLVDHLTHFREEFRFSQQLRGMLIRHP 375

Query: 345 GIFYISTRGNHGKLHTVFLREGYRRSELVEPNDVYLARRQLAELVLLS--PRKATVDREL 404
            +FY+S +G      +VFLRE YR SEL++ + + L + ++  LV +   PR+       
Sbjct: 376 DLFYVSLKGER---DSVFLREAYRNSELIDKDPLTLVKEKMRALVSVPRFPRRG------ 435

Query: 405 VGYRRERVGYDMENSRTDY-VEDKSVDFGVENKGNVRDVLD-SDIGSDVESDFSDDD 450
            G R++  G ++E   +D   E++  +   E   +V   L+  D G+D + D++DD+
Sbjct: 436 -GPRKDEEGREVEIDGSDADGEEEEEESDAEEWSDVDGYLEGEDGGNDDDGDWTDDE 472

The following BLAST results are available for this feature:

BLAST of CsaV3_5G005780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143708.2	6.1e-260	100.00	protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis sativus] >KAE8647948.1 hypothetical...	[more]
XP_016898810.1	1.1e-250	96.32	PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo] >XP_016898811.1 PR...	[more]
TYK00294.1	2.2e-233	96.96	protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo var. makuwa]	[more]
XP_038876292.1	1.7e-230	88.60	protein ROOT PRIMORDIUM DEFECTIVE 1 [Benincasa hispida] >XP_038876293.1 protein ...	[more]
KAA0055169.1	5.5e-229	96.67	protein ROOT PRIMORDIUM DEFECTIVE 1 [Cucumis melo var. makuwa]	[more]

BLAST of CsaV3_5G005780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q689D6	3.6e-170	80.16	Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana OX=3702 GN=RPD1 PE=1...	[more]
B6TTV8	3.8e-39	30.75	Protein WHAT'S THIS FACTOR 1, chloroplastic OS=Zea mays OX=4577 GN=WTF1 PE=1 SV=...	[more]
Q65XL5	2.5e-38	31.64	Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Oryza sativa subsp. japon...	[more]
A0MFS5	1.7e-34	28.78	Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]
Q9ZUZ6	1.2e-21	28.02	Protein WHAT'S THIS FACTOR 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=W...	[more]

BLAST of CsaV3_5G005780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DS47	5.6e-251	96.32	protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo OX=3656 GN=LOC103504628 PE=4...	[more]
A0A0A0KLD1	8.9e-241	100.00	PORR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G173460 PE=4 S...	[more]
A0A5D3BLZ6	1.1e-233	96.96	Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5A7UNY2	2.7e-229	96.67	Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A6J1EMT6	1.3e-220	84.55	protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Cucurbita moschata OX=3662 GN=LOC11143579...	[more]

BLAST of CsaV3_5G005780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G33495.1	2.5e-171	80.16	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT5G45790.2	6.2e-61	37.96	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT5G45790.1	1.3e-58	40.49	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT1G06440.1	1.2e-56	38.33	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT4G01037.1	1.2e-35	28.78	Ubiquitin carboxyl-terminal hydrolase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021099	Plant organelle RNA recognition domain	PFAM	PF11955	PORR	coord: 48..384 e-value: 2.9E-110 score: 368.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 438..462
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 434..462
IPR045040	PORR family	PANTHER	PTHR31476	PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC	coord: 20..442
IPR040295	Protein root primordium defective 1-like	PANTHER	PTHR31476:SF9	PROTEIN ROOT PRIMORDIUM DEFECTIVE 1	coord: 20..442

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G005780.1	CsaV3_5G005780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding