CsaV3_5G005640 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G005640
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
Location	chr5: 3698894 .. 3705925 (-)
RNA-Seq Expression	CsaV3_5G005640
Synteny	CsaV3_5G005640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGAGAGAGAGAGAGAAGTCGTTTTCATGGAAGAAGGAAAAGGAAGGAACTTTACTTTTACATTGACGATGTGGAGGAAGAAGAAAAAAATCCTGAGGGAATCTGCAGGCCATGAATTCTATTGGTTGATGTTGCTGATCTGTATTTCGTGGCGTTGGTTTTTAGGTTTTGGCTTTACTCTTTACTCTCTCTCTTCTTCGAACAATGAGACGTATTCTTGTGTTGTGGTTTAGGAAAATTCTCCACGATTGGTTTATCAACGTGCTCCAAGCTCAGACATTCGTCACTTTGGCCTTTCTACCTTCTTTTCACTCTTACGTCCTCCTTCAATTGTGGTTGAATTTGATGCTACGAAGATGTTGAACTTCATTAACAACTGACGCAATTCCTCAGTGTTTACCCTCCCTATTCTCTTCCGACTCTTCTCTAAATCTGATGCTAAGGAGACAGTGAACTTAATTCACAATTCATTGTTACATTTTACTCATTTACCTAATCTCATTGACAAGAGCTTTAGCAAGTTGGATGACTCTTTTCCCCTCTATTTGTAATCAACTTCTACTTGTTTTGTTATCTATTTTTTACCAATTTTAAAACACAGTCCTATAATCACTTGTTTGGATTTTTTGGTTGTTGATTGTTGTATGTTGTTCAGTTCATGTAAGATCTTTCACATGCTTTGTCTTTCACACCCTCAACGCCATACTTTTAGTGAATATTATGAAAAACAATTCAAAATAAAATACTCGAGATATAGCCAAATTCTAAAAAAATAAAATAACAAGTTTTAGTTTACTTAAAATTTTAAATTTTATTTTTAAAAACTTGATGACAAAAAAAGAATAACTTTTTTGAGGGATAAATATTTGGTGAAAGATTGTATTTTTGACAAAGTTTCTATTTATTATTATTTGTTTGATAAGTTTTTCCCTTATTTTTCATCTAAAGTCCCCAATAAGACGATTTTACCCTCACCATCCCGACGGCAGCTGCTTAAACTGAAAAGAAAACAACCAATCTGATTTATTACTCGTGTGAGCAAACAACACCGATCGGAGAAATGGCGTCGGTGGTGCGGGGGATTCTGAAATCGATCAAAGACAAAGGGATCGGCACTTTCTGGCGAGAGCTCAAGGAAGAAGGCTACTTGTAATAATTTCCTCCTCTACTTTTCGTTTTTCATCCATGGTTTATGTGAACTCCCTGGGGATTTTGTGGTGGTTTTTTCTTTTTTTTTTTTCTTTTTTTTGGGTAATTTGACTATTGTTACCGAATTCGAGAATTCGTGTCCTTTATTTCTTTTATGATTAATGGATGTGATGTATTGGTGTTTCTCTTATTGGTCTGAAGATCGCTGTTTTAATGTTCAATGACTATGGGTGTTTCTTTCCCAATTTGAATGTTTCCTTTCAGTCGCCGACAGTAGGGAATCGTTAATGCACTCTCTCTATGGCCTTAAAGTGGCCTATTTGAGATTGTTATTGCAGATTTGTATTTTGTGTAGCTATGGAGTGCACTGTTTAACAGGAATTTGCAAGTGAAACATGGATATTGATTCTTTTCGAGTTTAATCCCTTACTTTATTGTCTACCGATAAAATGTAGATTTTTTTAAAAGAAAAGTTAAAAATTTCTAAATAGATGCTTTTCAGAACTGGTTATCTCCAAGTTTCTCTCTTTTTATCTAACTCCCCTTCTTTCTTTTTGAGTTTTGGGAATATCTCCATTAATAGACCCTACCTTCAATTTTGTTGCAAGAATGAAATTGTAAATGTTTTATGTTTTCGATTGTTGTTGGATCCCCTCCTGCTAGCTAGTCGGTCTTTGATTGCTATGGAGGATTAGGATCCGTGAGAAAGTCAGGTTCGCTACTTGGCAAGTCTTACTTGGTTGAGCGAACACTTTGGATAGCTTGCCAAAGGGATGTTTCTTTGACGATTAAGGAGTTCGTTTTTCGTGTGCCTTTCAAATAGAATGACATCTTATTGTGGTTTGACAAGATGTGTGCTTTACTATGAAATATTTGGGGGAACAAACAATAGAGTGATTAGAGGTGTGGAGAGGGACCCCTTTGATGTCTGGTCCTTGGTGAGGTTGCATGTTTCTCTTTGGGCTTTGGTTTTGGATTTTCTCTTTTTTTTTTTTTTGCTTTTCCTTCGTAATTATTCTCTAGGTTGAATCTTTTTTTTAGATGGAAATCCGTTATCGCAGGCTTGTTTTTTTGCATGCTGATTGCTTTATTTTTTTCCCTCTAAAGCATTTGTTTTTATAAAAAAATTTGATTAAGGTTTATTTTAAATTGTTTATATTCTTGTGTGTGATACTGAACCTTTAGAAACGAGAATTCAAGCGTGAAGCATGCTTGGTTGTTTAAAGAGATTTTAAATGATTTTTGTTTATATATTTTTTTCTTATCAGGAAATGTTTGAACAACAAATGATCAAATAATGGAATTGTGTTTATGGCATGTGTTTGATGTCAATAGACGATAAATATGTTGTTTGCTTTAATGAGGGTTAAACTAAATTAGTGGGGACTGGTTAGAATAGTGTAATTTGAAGGAGGACTGGAGGAGTGAACATAAAATTCTTGGTTTGTGCATGTATTGTTGTTGTAAATAATTAGTTTACATCTTTGTTCATTTTGTAAATGGATACTGTCTCTGTTTCTCCACCAATATTAGAATCTGATTGTGTTAACTGTTTTGTTTCTTGCAGGAAATGCTTACCCGATGGAAATCTATTGTAAGTTAAATTTTCCATGAAATATTATGCTTTCCTATAAAATAGTTGGTTACTAACACCCCCTCTCTCCTTAGAACACGGATGTATATGCAAAAAAATTCATGGTTGCCTTCCTTTACATTTTGTTTATGCTTGCATGAAGGTTTGCATTATCCTTGGTTGGTTTTGCAAAACCATGGGTTGTGTATACTGCATACTATTCCACCGTTGTTTGTCCATAGCCAGCCTAGATTTTCTCAACCATAGTTTCTTCCTATAAGCTTGTTTCAAAGAATGTCGTAGGATTTTTGTTTGATCAGGCTTGATCCGAATTGGTGCCTCCATCAAATCCAAACGGGAAAGAATCTTCCTTGTGGTCCCAATAAAACCTCCACATTGGTGTCTGATGGACTTTAAAGTTTCTTCATCCCCTCTGTTAAGGGGGAGATTCCGGATCTTTATCCAACCCTCAAATGAGGGGACAACCTGTTTCTGGTAGGCCAAAGTTGGGTTCCAATGGTCAAATCTCAAGAAAAAGGGACCAACTTTGTACCAATCTTTGATCTTGCATACGGAAGCAACTTCCTCTTCGTTGTCACAATGCAGAAAAGCTTGATCAGCAAGAAATGGGTTGACAGTACAGAAATAGTTGATGTGTTGTGGTAACGCCCTTGTAATCCTGTACCAGTCATCATGGAAAGACTTCCTGTATACAACAACAGAGACATCAAGGTTTGCATTTTCAGTAGTAATGCTTTTGGTAGGTGGGCAATATGTCTCTTTCCAAAAACCTCTTTGTATGATGGGGGTTCTTTATGGTGTTGAGCAGGGGGGTGGTAGGCTGTTGGAGGGGGGGTTGGTTAGGTGGAGACCAGTGGGAATAATTAAGAAGCTGCGCCAACCTTTTCTGTCTCTCCCACAGGGATCATAAGCTTGTTTAAGCCTTTATTATTGTCTAGCTTGGCAATTTCTGCAAGCACCCTCTTGCTGTTGGTCGTTCTCTCGACCCATACTGTTTGGTCCTCACATCGAGTTTCTATGATGAAACGCTGGTTAAATGGGGCTTGTTGCAGAACCTTGAAGCATTCAATCAACCAATGGACGATGGAACGTTTAATGGTGAGGAAGAAGGTTCGGTCTCTTGTGGCTTGATTTTTGTCTGGTCAAGAGCAGGTCTGTGATCAATGGAGAAGTCCTTTTTCTCTATCTGAAATGAGTCAAGTTTGGTAGTCGGCACTGTGGTTGGTACAATAGATTCATGATTAGGGGTTAGGGGGTGGGGGTGGGGGTGGGGAGGGGGGAGAGCGGAATCATTTTTTTCCTAAAAGTCAGCTTCTGTTTTCAAAAGGGCCTGTATTCCGTAAAGAAATCTACATCTAATATCATTTATATTAATGTCAATACACTTAATGTTATATTTAGGCCTTGGGGGTACTAAAAACTGCATTATCAATTAACTAAACAATGTACTGTAGTTCTTCCTCGACTCAAATGTTCTGCTCCTGTACAATTATGTTATGATTTTCATGATACTTCAAATTTTCCATCAACAATAAATCCATTGTGCCGTTAGTTGGCTTTTTATTTGACGTCAAACAACTTTTTTGTCTCTCATTCATGCCGTGAATAATTTCCTTTCCATGTAAATTATGCATTTTATTTGGTTTAGAGGAGTAATCTTTATCATCTCTAATTTTTCATTTTTCTTTTCAAGGCAAACAAAGATCCACAACATTGGTGCGACACTTGTGGGTGTTGATAAGTTTGGTAATAAATATTACCAGAAGGTTGATGAAGAGACTCAATATGGTATTTTTTTTTTTCTCTAATTGGTTTTTGTTTGAGTTTCATGATGTTACTACCTCTTTGCTATGGGTCAGGGTCGAGATGTGTAAACCAATGCTTAATAAACTTTCCATGTTAGGTTTATATTTGCTTCTGGTAGATTAAGTTGCTTGAACAACGACAAATATTTAATATTAGGAGAAAGAATGTTTAATTGAAAATTACTATTTCCTTTTAGAAACTCCGCCATGTGGTGCATTCTCTTTAAGGAATTCGACAAGTACAGCATATCTGAATTTAATCTGAACTGGGATGCCTTTATTTCAGCAATCTAATAAAGTCTCAGAGTTTGTTGGTTTCCTACCTTACTTACTGGTGCTTATGTTCAGTCTAGTTTTGTTGTATTAGATCTTGGATTTTGGTTGTTCGGTCACCTTTTTATATTTGCTTGTGATGTAGTGGCTTTCATTTGCCCACATTTTATATGTTCCTAATAGTTTGTATGGATATGACGGAGATACTAAGGGGGTGTCAACCTAGTTCAAATGTCCGGGTGCGTCTACTAATCCCTAGGTTCTTATGCTCATTGTATAATCCTCTTGTACTTTGAGCTTTTGTCTCATTATTCATATTAATAAAAGAGACTCCTTTCCTTTTCAAAAAGAAAAAAATTTCTCCATCATTGAGTGATATTGTTCATGATCGATTGATTATGTTTCTCGTTACAAAGTAATGCTGTACTTTTTTCCTGTTCAGAACTGCTCTATTCCCTAATCCTACCTTGCTGCTGATAGCAGTGTTTTAAAAAGCCCTCTGGGTACGCACCTAGGCAGAAGGCACAAGTCTAGTGCCTCGCCTTAGAAAGATGAAACTCACAAAATAAGGTGCTCCTTAGGCGTGTGCTTTTTGTGAAGCCCCGTGCCTTGGGGCTTTTTCATTATATTTAGGAAATAGTAATAATGAGGGTTTTTTTCTCTATTAACTGAAAAATATCAAATTTACCAAGACTAAATACAAACTTTCTTGTGTTTTGAGTTTTTTTTCTCCACATTTCCACTTCAACTATGATTTGTCTTCCAAATGTACTTTTATATGCGCCTAAGAAAATCCACTTTTTTCTGCAACATGTGCTTAAGACCCAAAAGATTATTACGCTTTATTACTCCTTGAGTTTTAAAAAACACTAGCTGACAAGAAAGTTGAAAAAAGCTTGCTGGATCAAATAGCCGTTACCTTTAAAAGTGAAATCAAGAAAAGGAATTTTTTACCTATATAGGATGAAACCAGGTAAGTGAAATGAAGAAAAGGAATTTATTACTTATATAGGACGGAACCTTTTTATCTCGAATATCGAATTAACAATTATGCTTATTCAGTGTTCCAGTGTTCTCTAACCTTCTCTTTTCATGTTTTGGGAAAAGCTGAGGTAGTGATTAGTGAATTTGACATTTCTGTAGGTAGGCACAGGTGGGTTGAATATGCAGAGAAGGGTCGATATAATGCTTCTCAGGTGCCACCCGAATGGCATGGCTGGCTCCACCACATAACTGATCATACAGGAGACGAGGTAATTCCCTTGCACTTAATTCTCTACTAAGCTTGGTAAAAATTTGCTTACCAAAAATTGGTATATTATTAAACTATTATGTTGTTTGCCACATGTCCAAATATACTTATAAAACACGAATTTTAATGACATAAGCTTTGTGTTAACAAATTTTAGCTAAATTTTATATGGAGAAACCCAATTGCAAGAATGAAAATATACATCGATTTGTCAATAGATATCGTTATATCACAAATCGAAAAGCTCAACATTGGTACTGAATATCCACATATATCTTTTTATCTTTTGCAAAGGCTCGCAAAACATAAGAATGTCGTGTGTTTAATCCAATATTCCAGTACGAATAGAAATACTAATAACAACATCTAGAACTCAGTTTGAGAGTAAAAGCAACTTAAATATTAATCTAAGCAATGTGAAAAATGTTTTGCAGCTTCTGATGCTGAAACCAAGCAGATATGGAATTGAACATAAGGAAAACTTTTCCGGGGAAGGTGAAGAACTTATCTACCATTCCAAGGGACATGCTCTTAATCCTGGACAGAGAGATTGGACTCGATACCAATCATGGCAACCAACCAAATCATAAGTAATTTGTTTTTCAACAATCCCTTTGTTCAATTTGGAAATCCTTGGGATATTGGTTTGTCTTTTTTCCTTTCTTCTGAATAAGAGACTTGTTGTCTATACAAGCTGTGAATTATTTTTCATCATGCTTTACTGCACAACAGATAGAGGAATTTTCAGCATGGTACTGATTTTCTAAGTTTTAACAAATTCATTGTTGTGCTAATCTCCTGTCAAATTCTGTTCTTTTGGTGCCATGTAAAATGTTATATCTTGTTAGCAGCT

mRNA sequence

ATGGCGTCGGTGGTGCGGGGGATTCTGAAATCGATCAAAGACAAAGGGATCGGCACTTTCTGGCGAGAGCTCAAGGAAGAAGGCTACTTGAAATGCTTACCCGATGGAAATCTATTGCAAACAAAGATCCACAACATTGGTGCGACACTTGTGGGTGTTGATAAGTTTGGTAATAAATATTACCAGAAGGTTGATGAAGAGACTCAATATGGTAGGCACAGGTGGGTTGAATATGCAGAGAAGGGTCGATATAATGCTTCTCAGGTGCCACCCGAATGGCATGGCTGGCTCCACCACATAACTGATCATACAGGAGACGAGCTTCTGATGCTGAAACCAAGCAGATATGGAATTGAACATAAGGAAAACTTTTCCGGGGAAGGTGAAGAACTTATCTACCATTCCAAGGGACATGCTCTTAATCCTGGACAGAGAGATTGGACTCGATACCAATCATGGCAACCAACCAAATCATAA

Coding sequence (CDS)

ATGGCGTCGGTGGTGCGGGGGATTCTGAAATCGATCAAAGACAAAGGGATCGGCACTTTCTGGCGAGAGCTCAAGGAAGAAGGCTACTTGAAATGCTTACCCGATGGAAATCTATTGCAAACAAAGATCCACAACATTGGTGCGACACTTGTGGGTGTTGATAAGTTTGGTAATAAATATTACCAGAAGGTTGATGAAGAGACTCAATATGGTAGGCACAGGTGGGTTGAATATGCAGAGAAGGGTCGATATAATGCTTCTCAGGTGCCACCCGAATGGCATGGCTGGCTCCACCACATAACTGATCATACAGGAGACGAGCTTCTGATGCTGAAACCAAGCAGATATGGAATTGAACATAAGGAAAACTTTTCCGGGGAAGGTGAAGAACTTATCTACCATTCCAAGGGACATGCTCTTAATCCTGGACAGAGAGATTGGACTCGATACCAATCATGGCAACCAACCAAATCATAA

Protein sequence

MASVVRGILKSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKYYQKVDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHHITDHTGDELLMLKPSRYGIEHKENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS*

Homology

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BLAST of CsaV3_5G005640 vs. NCBI nr
Match: XP_004143640.2 (probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Cucumis sativus] >KGN50404.1 hypothetical protein Csa_000501 [Cucumis sativus])

HSP 1 Score: 346.3 bits (887), Expect = 1.4e-91
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MASVVRGILKSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKY 60
           MASVVRGILKSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKY
Sbjct: 1   MASVVRGILKSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKY 60

Query: 61  YQKVDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHHITDHTGDELLMLKPSRYGIEH 120
           YQKVDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHHITDHTGDELLMLKPSRYGIEH
Sbjct: 61  YQKVDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHHITDHTGDELLMLKPSRYGIEH 120

Query: 121 KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 159
           KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS
Sbjct: 121 KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 158

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BLAST of CsaV3_5G005640 vs. NCBI nr
Match: XP_038875755.1 (probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Benincasa hispida])

HSP 1 Score: 343.6 bits (880), Expect = 9.2e-91
Identity = 156/158 (98.73%), Postives = 157/158 (99.37%), Query Frame = 0


Query: 1   MASVVRGILKSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKY 60
           MASVVRGILKSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKY
Sbjct: 1   MASVVRGILKSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKY 60

Query: 61  YQKVDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHHITDHTGDELLMLKPSRYGIEH 120
           YQ+VDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHHITDHTGDELLMLKPSRYGIEH
Sbjct: 61  YQRVDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHHITDHTGDELLMLKPSRYGIEH 120

Query: 121 KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 159
           KENFSGEGEE IYHSKGHALNPGQRDWTRYQSWQPTKS
Sbjct: 121 KENFSGEGEEFIYHSKGHALNPGQRDWTRYQSWQPTKS 158

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BLAST of CsaV3_5G005640 vs. NCBI nr
Match: XP_022958111.1 (probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Cucurbita moschata] >KAG6605691.1 putative NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035599.1 putative NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 341.7 bits (875), Expect = 3.5e-90
Identity = 155/158 (98.10%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MASVVRGILKSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKY 60
           MASVVRGI+KSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKY
Sbjct: 1   MASVVRGIVKSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKY 60

Query: 61  YQKVDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHHITDHTGDELLMLKPSRYGIEH 120
           YQK+DEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLH+ITDHTGDELLMLKPSRYGIEH
Sbjct: 61  YQKLDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHYITDHTGDELLMLKPSRYGIEH 120

Query: 121 KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 159
           KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS
Sbjct: 121 KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 158

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BLAST of CsaV3_5G005640 vs. NCBI nr
Match: XP_008467243.1 (PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Cucumis melo] >KAA0055156.1 putative NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 12 [Cucumis melo var. makuwa])

HSP 1 Score: 340.5 bits (872), Expect = 7.8e-90
Identity = 155/158 (98.10%), Postives = 156/158 (98.73%), Query Frame = 0


Query: 1   MASVVRGILKSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKY 60
           MASVVRGILKSIKDKGIGTFWRELKEEGYLKCL DGNLLQTKIHNIGATLVGVDKFGNKY
Sbjct: 1   MASVVRGILKSIKDKGIGTFWRELKEEGYLKCLADGNLLQTKIHNIGATLVGVDKFGNKY 60

Query: 61  YQKVDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHHITDHTGDELLMLKPSRYGIEH 120
           YQ+VDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHHITDHTGDELLMLKPSRYGIEH
Sbjct: 61  YQRVDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHHITDHTGDELLMLKPSRYGIEH 120

Query: 121 KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 159
           KENFSGEGEE IYHSKGHALNPGQRDWTRYQSWQPTKS
Sbjct: 121 KENFSGEGEEFIYHSKGHALNPGQRDWTRYQSWQPTKS 158

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BLAST of CsaV3_5G005640 vs. NCBI nr
Match: XP_022996140.1 (probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Cucurbita maxima])

HSP 1 Score: 339.3 bits (869), Expect = 1.7e-89
Identity = 154/158 (97.47%), Postives = 157/158 (99.37%), Query Frame = 0


Query: 1   MASVVRGILKSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKY 60
           MASVVRGI+KSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIH IGATLVGVDKFGNKY
Sbjct: 1   MASVVRGIVKSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIHKIGATLVGVDKFGNKY 60

Query: 61  YQKVDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHHITDHTGDELLMLKPSRYGIEH 120
           YQK+DEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLH+ITDHTGDELLMLKPSRYGIEH
Sbjct: 61  YQKLDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHYITDHTGDELLMLKPSRYGIEH 120

Query: 121 KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 159
           KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS
Sbjct: 121 KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 158

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BLAST of CsaV3_5G005640 vs. ExPASy Swiss-Prot
Match: Q9M9M9 (Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Arabidopsis thaliana OX=3702 GN=At3g03100 PE=1 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 4.5e-72
Identity = 119/156 (76.28%), Postives = 138/156 (88.46%), Query Frame = 0


Query: 3   SVVRGILKSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKYYQ 62
           +V +  L++I++KG+G F R ++EEG+++CLPDGNLLQTKIHNIGATLVGVDKFGNKYYQ
Sbjct: 4   TVAKSALEAIREKGLGGFMRMIREEGFMRCLPDGNLLQTKIHNIGATLVGVDKFGNKYYQ 63

Query: 63  KVDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHHITDHTGDELLMLKPSRYGIEHKE 122
           K+  +TQYGRHRWVEYA K RYNASQVP EWHGWLH ITDHTGDELL LKP RYG+EHKE
Sbjct: 64  KLG-DTQYGRHRWVEYASKDRYNASQVPAEWHGWLHFITDHTGDELLSLKPKRYGLEHKE 123

Query: 123 NFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 159
           NFSGEG+  IYHSKGH LNPGQ++WTRYQSW PTK+
Sbjct: 124 NFSGEGDAYIYHSKGHTLNPGQKNWTRYQSWVPTKT 158

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BLAST of CsaV3_5G005640 vs. ExPASy Swiss-Prot
Match: Q9N2W7 (Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Caenorhabditis elegans OX=6239 GN=Y94H6A.8 PE=3 SV=2)

HSP 1 Score: 81.6 bits (200), Expect = 8.6e-15
Identity = 57/146 (39.04%), Postives = 77/146 (52.74%), Query Frame = 0


Query: 17  IGTFWRELKEEGYLKCLPDGNLLQ--TKIHNIGATLVGVDKFGNKYYQKVDEETQYGRHR 76
           I  F + +KE G +K +     L   T++     TLVG D FGN+YY+  +      R+R
Sbjct: 12  IQKFGQMVKEIGGVKAVLKKRYLMDATRV----GTLVGSDNFGNRYYE--NNAYFVPRNR 71

Query: 77  WVEYAEKG--RYNASQVPPEWHGWLHHITDHTGDELLMLKP---SRYGIEHKENFSGEGE 136
           WVE+ +K    Y+A+QVPPEWH WLHHIT    D+   +KP     + +EHKEN S    
Sbjct: 72  WVEFPDKVWLDYDATQVPPEWHSWLHHIT----DDAPSVKPPPTQDWVLEHKENTS---- 131

Query: 137 ELIYHSKGHALNPGQRDWTRYQSWQP 156
             IY  K +   P     T+ Q WQP
Sbjct: 132 --IYADKKYV--PYSTTRTKIQGWQP 139

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BLAST of CsaV3_5G005640 vs. ExPASy Swiss-Prot
Match: Q54MV7 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Dictyostelium discoideum OX=44689 GN=ndufa12 PE=2 SV=2)

HSP 1 Score: 77.0 bits (188), Expect = 2.1e-13
Identity = 35/78 (44.87%), Postives = 50/78 (64.10%), Query Frame = 0


Query: 49  TLVGVDKFGNKYYQKVDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHHITDHTGDEL 108
           TLVGVDK GN+YY+  + +  YGRHRWVEY +    + + +PPE+H W+HH++D    E+
Sbjct: 33  TLVGVDKVGNRYYE--NRQEIYGRHRWVEYGDYKSNDPTTIPPEYHSWIHHVSDKLPSEM 92

Query: 109 LMLKPSRYGIEHKENFSG 127
           L   P+ Y   H  N +G
Sbjct: 93  LPFSPT-YKRPHIANPTG 107

[Close]

BLAST of CsaV3_5G005640 vs. ExPASy Swiss-Prot
Match: Q0MQ85 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Pongo pygmaeus OX=9600 GN=NDUFA12 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.5e-11
Identity = 39/94 (41.49%), Postives = 51/94 (54.26%), Query Frame = 0


Query: 49  TLVGVDKFGNKYYQKVDEETQYGRHRWVEYAEK--GR-----YNASQVPPEWHGWLHHIT 108
           TLVG DK+GNKYY+  D +  +GRHRWV Y  +  G+      + S VPPEWH WLH IT
Sbjct: 37  TLVGEDKYGNKYYE--DNKQFFGRHRWVVYTTEMNGKNTFWDVDGSMVPPEWHHWLHSIT 96

Query: 109 DHTGDELLMLKPSRYGIEHKENFSGEGEELIYHS 136
           D       +         HK N +G  E+ + +S
Sbjct: 97  DDPPTTKPLTARKFIWTNHKFNVTGTPEQYVPYS 128

[Close]

BLAST of CsaV3_5G005640 vs. ExPASy Swiss-Prot
Match: Q0MQ86 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Gorilla gorilla gorilla OX=9595 GN=NDUFA12 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.6e-11
Identity = 38/94 (40.43%), Postives = 51/94 (54.26%), Query Frame = 0


Query: 49  TLVGVDKFGNKYYQKVDEETQYGRHRWVEYAEK--GR-----YNASQVPPEWHGWLHHIT 108
           TLVG DK+GNKYY+  D +  +GRHRWV Y  +  G+      + S VPPEWH WLH +T
Sbjct: 37  TLVGEDKYGNKYYE--DNKQFFGRHRWVVYTTEMNGKNTFWDVDGSMVPPEWHRWLHSMT 96

Query: 109 DHTGDELLMLKPSRYGIEHKENFSGEGEELIYHS 136
           D       +         HK N +G  E+ + +S
Sbjct: 97  DDPPTTKPLTARKFIWTNHKFNMTGTPEQYVPYS 128

[Close]

BLAST of CsaV3_5G005640 vs. ExPASy TrEMBL
Match: A0A0A0KNC9 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Cucumis sativus OX=3659 GN=Csa_5G172840 PE=3 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 6.9e-92
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MASVVRGILKSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKY 60
           MASVVRGILKSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKY
Sbjct: 1   MASVVRGILKSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKY 60

Query: 61  YQKVDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHHITDHTGDELLMLKPSRYGIEH 120
           YQKVDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHHITDHTGDELLMLKPSRYGIEH
Sbjct: 61  YQKVDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHHITDHTGDELLMLKPSRYGIEH 120

Query: 121 KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 159
           KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS
Sbjct: 121 KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 158

[Close]

BLAST of CsaV3_5G005640 vs. ExPASy TrEMBL
Match: A0A6J1H155 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Cucurbita moschata OX=3662 GN=LOC111459435 PE=3 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 1.7e-90
Identity = 155/158 (98.10%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MASVVRGILKSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKY 60
           MASVVRGI+KSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKY
Sbjct: 1   MASVVRGIVKSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKY 60

Query: 61  YQKVDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHHITDHTGDELLMLKPSRYGIEH 120
           YQK+DEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLH+ITDHTGDELLMLKPSRYGIEH
Sbjct: 61  YQKLDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHYITDHTGDELLMLKPSRYGIEH 120

Query: 121 KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 159
           KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS
Sbjct: 121 KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 158

[Close]

BLAST of CsaV3_5G005640 vs. ExPASy TrEMBL
Match: A0A5A7ULJ6 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold231G00880 PE=3 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 3.8e-90
Identity = 155/158 (98.10%), Postives = 156/158 (98.73%), Query Frame = 0


Query: 1   MASVVRGILKSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKY 60
           MASVVRGILKSIKDKGIGTFWRELKEEGYLKCL DGNLLQTKIHNIGATLVGVDKFGNKY
Sbjct: 1   MASVVRGILKSIKDKGIGTFWRELKEEGYLKCLADGNLLQTKIHNIGATLVGVDKFGNKY 60

Query: 61  YQKVDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHHITDHTGDELLMLKPSRYGIEH 120
           YQ+VDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHHITDHTGDELLMLKPSRYGIEH
Sbjct: 61  YQRVDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHHITDHTGDELLMLKPSRYGIEH 120

Query: 121 KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 159
           KENFSGEGEE IYHSKGHALNPGQRDWTRYQSWQPTKS
Sbjct: 121 KENFSGEGEEFIYHSKGHALNPGQRDWTRYQSWQPTKS 158

[Close]

BLAST of CsaV3_5G005640 vs. ExPASy TrEMBL
Match: A0A1S3CUD4 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Cucumis melo OX=3656 GN=LOC103504642 PE=3 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 3.8e-90
Identity = 155/158 (98.10%), Postives = 156/158 (98.73%), Query Frame = 0


Query: 1   MASVVRGILKSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKY 60
           MASVVRGILKSIKDKGIGTFWRELKEEGYLKCL DGNLLQTKIHNIGATLVGVDKFGNKY
Sbjct: 1   MASVVRGILKSIKDKGIGTFWRELKEEGYLKCLADGNLLQTKIHNIGATLVGVDKFGNKY 60

Query: 61  YQKVDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHHITDHTGDELLMLKPSRYGIEH 120
           YQ+VDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHHITDHTGDELLMLKPSRYGIEH
Sbjct: 61  YQRVDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHHITDHTGDELLMLKPSRYGIEH 120

Query: 121 KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 159
           KENFSGEGEE IYHSKGHALNPGQRDWTRYQSWQPTKS
Sbjct: 121 KENFSGEGEEFIYHSKGHALNPGQRDWTRYQSWQPTKS 158

[Close]

BLAST of CsaV3_5G005640 vs. ExPASy TrEMBL
Match: A0A6J1K5W7 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Cucurbita maxima OX=3661 GN=LOC111491451 PE=3 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 8.4e-90
Identity = 154/158 (97.47%), Postives = 157/158 (99.37%), Query Frame = 0


Query: 1   MASVVRGILKSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKY 60
           MASVVRGI+KSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIH IGATLVGVDKFGNKY
Sbjct: 1   MASVVRGIVKSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIHKIGATLVGVDKFGNKY 60

Query: 61  YQKVDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHHITDHTGDELLMLKPSRYGIEH 120
           YQK+DEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLH+ITDHTGDELLMLKPSRYGIEH
Sbjct: 61  YQKLDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHYITDHTGDELLMLKPSRYGIEH 120

Query: 121 KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 159
           KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS
Sbjct: 121 KENFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 158

[Close]

BLAST of CsaV3_5G005640 vs. TAIR 10
Match: AT3G03100.1 (NADH:ubiquinone oxidoreductase, 17.2kDa subunit )

HSP 1 Score: 271.9 bits (694), Expect = 3.2e-73
Identity = 119/156 (76.28%), Postives = 138/156 (88.46%), Query Frame = 0


Query: 3   SVVRGILKSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKYYQ 62
           +V +  L++I++KG+G F R ++EEG+++CLPDGNLLQTKIHNIGATLVGVDKFGNKYYQ
Sbjct: 4   TVAKSALEAIREKGLGGFMRMIREEGFMRCLPDGNLLQTKIHNIGATLVGVDKFGNKYYQ 63

Query: 63  KVDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHHITDHTGDELLMLKPSRYGIEHKE 122
           K+  +TQYGRHRWVEYA K RYNASQVP EWHGWLH ITDHTGDELL LKP RYG+EHKE
Sbjct: 64  KLG-DTQYGRHRWVEYASKDRYNASQVPAEWHGWLHFITDHTGDELLSLKPKRYGLEHKE 123

Query: 123 NFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 159
           NFSGEG+  IYHSKGH LNPGQ++WTRYQSW PTK+
Sbjct: 124 NFSGEGDAYIYHSKGHTLNPGQKNWTRYQSWVPTKT 158

[Close]

BLAST of CsaV3_5G005640 vs. TAIR 10
Match: AT3G03100.2 (NADH:ubiquinone oxidoreductase, 17.2kDa subunit )

HSP 1 Score: 269.6 bits (688), Expect = 1.6e-72
Identity = 118/156 (75.64%), Postives = 137/156 (87.82%), Query Frame = 0


Query: 3   SVVRGILKSIKDKGIGTFWRELKEEGYLKCLPDGNLLQTKIHNIGATLVGVDKFGNKYYQ 62
           +V +  L++I++KG+G F R ++EEG+++CLPDGNLLQTKIHNIGATLVGVDKFGNKYYQ
Sbjct: 4   TVAKSALEAIREKGLGGFMRMIREEGFMRCLPDGNLLQTKIHNIGATLVGVDKFGNKYYQ 63

Query: 63  KVDEETQYGRHRWVEYAEKGRYNASQVPPEWHGWLHHITDHTGDELLMLKPSRYGIEHKE 122
           K+  +TQYG HRWVEYA K RYNASQVP EWHGWLH ITDHTGDELL LKP RYG+EHKE
Sbjct: 64  KLG-DTQYGMHRWVEYASKDRYNASQVPAEWHGWLHFITDHTGDELLSLKPKRYGLEHKE 123

Query: 123 NFSGEGEELIYHSKGHALNPGQRDWTRYQSWQPTKS 159
           NFSGEG+  IYHSKGH LNPGQ++WTRYQSW PTK+
Sbjct: 124 NFSGEGDAYIYHSKGHTLNPGQKNWTRYQSWVPTKT 158

The following BLAST results are available for this feature:

BLAST of CsaV3_5G005640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143640.2	1.4e-91	100.00	probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Cucumis ...	[more]
XP_038875755.1	9.2e-91	98.73	probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Benincas...	[more]
XP_022958111.1	3.5e-90	98.10	probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Cucurbit...	[more]
XP_008467243.1	7.8e-90	98.10	PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1...	[more]
XP_022996140.1	1.7e-89	97.47	probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Cucurbit...	[more]

BLAST of CsaV3_5G005640 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M9M9	4.5e-72	76.28	Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Arabid...	[more]
Q9N2W7	8.6e-15	39.04	Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Caenor...	[more]
Q54MV7	2.1e-13	44.87	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Dictyostelium d...	[more]
Q0MQ85	1.5e-11	41.49	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Pongo pygmaeus ...	[more]
Q0MQ86	2.6e-11	40.43	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Gorilla gorilla...	[more]

BLAST of CsaV3_5G005640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNC9	6.9e-92	100.00	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Cucumis sativus...	[more]
A0A6J1H155	1.7e-90	98.10	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Cucurbita mosch...	[more]
A0A5A7ULJ6	3.8e-90	98.10	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Cucumis melo va...	[more]
A0A1S3CUD4	3.8e-90	98.10	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Cucumis melo OX...	[more]
A0A6J1K5W7	8.4e-90	97.47	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Cucurbita maxim...	[more]

BLAST of CsaV3_5G005640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G03100.1	3.2e-73	76.28	NADH:ubiquinone oxidoreductase, 17.2kDa subunit	[more]
AT3G03100.2	1.6e-72	75.64	NADH:ubiquinone oxidoreductase, 17.2kDa subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007763	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12	PFAM	PF05071	NDUFA12	coord: 49..155 e-value: 6.9E-26 score: 91.1
IPR007763	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12	PANTHER	PTHR12910	NADH-UBIQUINONE OXIDOREDUCTASE SUBUNIT B17.2	coord: 3..157
None	No IPR available	PANTHER	PTHR12910:SF10	NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT 12	coord: 3..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G005640.1	CsaV3_5G005640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032981	mitochondrial respiratory chain complex I assembly
cellular_component	GO:0016020	membrane