CsaV3_5G005490 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G005490
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	CDGSH iron-sulfur domain-containing protein NEET
Location	chr5: 3550401 .. 3551441 (+)
RNA-Seq Expression	CsaV3_5G005490
Synteny	CsaV3_5G005490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GATAGGGTTGTGTTGTGAAGGAAATTTAGGGAAGGAGACGTGTCAAATGAAGATCCACCAATTAGGATGTGGTTTCAATTGTAGTTTAAAAGCGTATGGTCTCCACACGTTCATCACCCCCTCCCTCCATTTCGATACTTCACCACATATCTGAGTTTACTATTTGCATACTATGGCATCCATTCTACCCATTTCTTCACCTTCTTCTTCCCTATCAACAAGACCCCATCTTCTCTCTCGTAATTTCAACGACAATGGACGACGTCGTACTGTTGTCGTAAGAGCTGAAGGTGGCAGCAGCGGCGAACATATAAACCCTGCAATCAGAAAGAGTGAAGACAAAGTGGTGGACTCTGTGCTCGTTCCTGAACTTTCCAAGCCTCTCACTCCTTATTGCAGGTTCTTTTGATCTCATTCTTTTCCTTTTATTCCTCATTCTCACATGCTTAATTTTGCAAAATGGGAGGAATTATAAATTTTGATCACCTGCATTGTATTATATTTGTTAGTATTTTAAACATGATTGCTATAACGACTGAAATGGAACCTCTTTAAAAGATATATGAGATGTGGTTTGGGTGCAGATGTTGGAGGTCAGGGACATTTCCTCTTTGTGATGGAAGCCATGTTAAGCACAACAAAGCAACTGGAGATAACGTTGGTCCTTTGCTCTTAAAGAAGTAGTAGACATTACACACATTCTCATGCTTTTCTTTTATTTCTTTTTCATTCTCCAACCTCTTTATCTCTTCCTGCCTAGCTTCTGTTGAGAACACATTTGAGTTTGTTTCTTAAAATAGTTAAAAACACTTTTTTCTAGTGGAAAAAGACTACCGTTGATTTTTCAGTCGTTGTTCATGAATCGTATTTAATTGTGATACTAAATATTAAATTGATTGAATTAGCATAAATAAAAAATAAAAGTATGTTTGCAAGTGATTTTGAATATATCAATATGATTTTTAATGTACATTCTGATGATTCCATTCATATATATTATGAGAAATTCTATCCCCCTGAGATGTATTAATCTTTACTGTG

mRNA sequence

ATGGCATCCATTCTACCCATTTCTTCACCTTCTTCTTCCCTATCAACAAGACCCCATCTTCTCTCTCGTAATTTCAACGACAATGGACGACGTCGTACTGTTGTCGTAAGAGCTGAAGGTGGCAGCAGCGGCGAACATATAAACCCTGCAATCAGAAAGAGTGAAGACAAAGTGGTGGACTCTGTGCTCGTTCCTGAACTTTCCAAGCCTCTCACTCCTTATTGCAGATGTTGGAGGTCAGGGACATTTCCTCTTTGTGATGGAAGCCATGTTAAGCACAACAAAGCAACTGGAGATAACGTTGGTCCTTTGCTCTTAAAGAAGTAG

Coding sequence (CDS)

ATGGCATCCATTCTACCCATTTCTTCACCTTCTTCTTCCCTATCAACAAGACCCCATCTTCTCTCTCGTAATTTCAACGACAATGGACGACGTCGTACTGTTGTCGTAAGAGCTGAAGGTGGCAGCAGCGGCGAACATATAAACCCTGCAATCAGAAAGAGTGAAGACAAAGTGGTGGACTCTGTGCTCGTTCCTGAACTTTCCAAGCCTCTCACTCCTTATTGCAGATGTTGGAGGTCAGGGACATTTCCTCTTTGTGATGGAAGCCATGTTAAGCACAACAAAGCAACTGGAGATAACGTTGGTCCTTTGCTCTTAAAGAAGTAG

Protein sequence

MASILPISSPSSSLSTRPHLLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK*

Homology

[Close]

BLAST of CsaV3_5G005490 vs. NCBI nr
Match: XP_004143713.1 (CDGSH iron-sulfur domain-containing protein NEET [Cucumis sativus] >KGN50388.1 hypothetical protein Csa_000068 [Cucumis sativus])

HSP 1 Score: 223.4 bits (568), Expect = 9.5e-55
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MASILPISSPSSSLSTRPHLLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVVD 60
           MASILPISSPSSSLSTRPHLLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVVD
Sbjct: 1   MASILPISSPSSSLSTRPHLLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVVD 60

Query: 61  SVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK 109
           SVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK
Sbjct: 61  SVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK 108

[Close]

BLAST of CsaV3_5G005490 vs. NCBI nr
Match: XP_008467263.1 (PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Cucumis melo] >KAA0055137.1 CDGSH iron-sulfur domain-containing protein NEET [Cucumis melo var. makuwa])

HSP 1 Score: 191.8 bits (486), Expect = 3.1e-45
Identity = 98/109 (89.91%), Postives = 102/109 (93.58%), Query Frame = 0


Query: 1   MASILPISSPSSSLSTRPH-LLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVV 60
           MASI+ ISSPSSSLSTR   LL R+FNDNGRRRTVVVRAE GSSGEHINPAIRKSE+KVV
Sbjct: 1   MASIVAISSPSSSLSTRAGLLLPRSFNDNGRRRTVVVRAE-GSSGEHINPAIRKSEEKVV 60

Query: 61  DSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK 109
           DSVL+ ELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK
Sbjct: 61  DSVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK 108

[Close]

BLAST of CsaV3_5G005490 vs. NCBI nr
Match: XP_038876467.1 (CDGSH iron-sulfur domain-containing protein NEET [Benincasa hispida])

HSP 1 Score: 160.2 bits (404), Expect = 9.9e-36
Identity = 84/109 (77.06%), Postives = 93/109 (85.32%), Query Frame = 0


Query: 1   MASILPISSPSS-SLSTRPHLLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVV 60
           MASI+ IS PSS S+++RP     NF  +GRR TVVVRA+ GS GE INPAIRK+EDKVV
Sbjct: 1   MASIVAISLPSSLSITSRPP--HSNFIGSGRRSTVVVRAQ-GSGGEPINPAIRKTEDKVV 60

Query: 61  DSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK 109
           DSVL+ ELSKPLTPYCRCWRS TFPLCDGSHVKHNKATGDNVGPLLLK+
Sbjct: 61  DSVLIAELSKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKQ 106

[Close]

BLAST of CsaV3_5G005490 vs. NCBI nr
Match: XP_023534172.1 (CDGSH iron-sulfur domain-containing protein NEET [Cucurbita pepo subsp. pepo])

HSP 1 Score: 145.6 bits (366), Expect = 2.5e-31
Identity = 73/102 (71.57%), Postives = 82/102 (80.39%), Query Frame = 0


Query: 7   ISSPSSSLSTRPHLLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVVDSVLVPE 66
           + + S+  +TRP  ++       RRR VVVRAEG   GE INPAIRKSEDKVVDSV+V +
Sbjct: 4   LPATSALPTTRPPHVNFTLGGMPRRRMVVVRAEG---GEAINPAIRKSEDKVVDSVVVAD 63

Query: 67  LSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK 109
           L+KPLTPYCRCWRS TFPLCDGSHVKHNKATGDNVGPLLLKK
Sbjct: 64  LAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKK 102

[Close]

BLAST of CsaV3_5G005490 vs. NCBI nr
Match: XP_010109084.1 (CDGSH iron-sulfur domain-containing protein NEET isoform X2 [Morus notabilis] >EXC20884.1 CDGSH iron-sulfur domain-containing protein 2A [Morus notabilis])

HSP 1 Score: 145.2 bits (365), Expect = 3.3e-31
Identity = 70/90 (77.78%), Postives = 74/90 (82.22%), Query Frame = 0


Query: 19  HLLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCW 78
           H  + NF     RR VVVRAE    G+ INP IRKSE+KVVDSV+V ELSKPLTPYCRCW
Sbjct: 31  HKPTTNFKSRSSRRLVVVRAE----GQAINPEIRKSEEKVVDSVVVTELSKPLTPYCRCW 90

Query: 79  RSGTFPLCDGSHVKHNKATGDNVGPLLLKK 109
           RSGTFPLCDGSHVKHNKATGDNVGPLLLKK
Sbjct: 91  RSGTFPLCDGSHVKHNKATGDNVGPLLLKK 116

[Close]

BLAST of CsaV3_5G005490 vs. ExPASy Swiss-Prot
Match: Q9FLI7 (CDGSH iron-sulfur domain-containing protein NEET OS=Arabidopsis thaliana OX=3702 GN=NEET PE=1 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 2.6e-31
Identity = 64/79 (81.01%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 30  RRRTVVVRAEGGSSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGS 89
           ++R VVVRAEGG     INP IRK+EDKVVDSV+V ELSK +TPYCRCWRSGTFPLCDGS
Sbjct: 32  QQRMVVVRAEGGGG---INPEIRKNEDKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGS 91

Query: 90  HVKHNKATGDNVGPLLLKK 109
           HVKHNKA GDNVGPLLLKK
Sbjct: 92  HVKHNKANGDNVGPLLLKK 107

[Close]

BLAST of CsaV3_5G005490 vs. ExPASy Swiss-Prot
Match: Q7T326 (CDGSH iron-sulfur domain-containing protein 2 OS=Danio rerio OX=7955 GN=cisd2 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.8e-17
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 0


Query: 47  INPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLL 106
           IN  I+K   KVV+ + + +L  P   YCRCWRS TFP+CD SH+KHN+ TGDNVGPL+L
Sbjct: 71  INLKIQKENPKVVNEIDIEDLRTPNVCYCRCWRSKTFPVCDKSHIKHNELTGDNVGPLIL 130

Query: 107 KK 109
           KK
Sbjct: 131 KK 132

[Close]

BLAST of CsaV3_5G005490 vs. ExPASy Swiss-Prot
Match: C1BI29 (CDGSH iron-sulfur domain-containing protein 2A OS=Oncorhynchus mykiss OX=8022 GN=cisd2a PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.1e-16
Identity = 36/62 (58.06%), Postives = 47/62 (75.81%), Query Frame = 0


Query: 47  INPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLL 106
           IN  I+K   KVV+ + + +L++    YCRCWRS TFP+CD SH+KHN+ TGDNVGPL+L
Sbjct: 71  INLEIQKENPKVVNEIDIEDLNRTNVCYCRCWRSKTFPVCDKSHIKHNELTGDNVGPLIL 130

Query: 107 KK 109
           KK
Sbjct: 131 KK 132

[Close]

BLAST of CsaV3_5G005490 vs. ExPASy Swiss-Prot
Match: Q6PCF8 (CDGSH iron-sulfur domain-containing protein 2A OS=Xenopus laevis OX=8355 GN=cisd2-a PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.1e-16
Identity = 37/62 (59.68%), Postives = 45/62 (72.58%), Query Frame = 0


Query: 47  INPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLL 106
           IN  I+K   KVV+ + + +L      YCRCWRS TFP+CDGSH KHN+ TGDNVGPL+L
Sbjct: 71  INLKIQKENPKVVNEINIEDLHLAKAAYCRCWRSKTFPVCDGSHNKHNELTGDNVGPLIL 130

Query: 107 KK 109
           KK
Sbjct: 131 KK 132

[Close]

BLAST of CsaV3_5G005490 vs. ExPASy Swiss-Prot
Match: Q6AZG1 (CDGSH iron-sulfur domain-containing protein 2B OS=Xenopus laevis OX=8355 GN=cisd2-b PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.1e-16
Identity = 37/62 (59.68%), Postives = 45/62 (72.58%), Query Frame = 0


Query: 47  INPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLL 106
           IN  I+K   KVV+ + + +L      YCRCWRS TFP+CDGSH KHN+ TGDNVGPL+L
Sbjct: 71  INLKIQKENPKVVNEINIEDLHLAKAAYCRCWRSKTFPVCDGSHNKHNELTGDNVGPLIL 130

Query: 107 KK 109
           KK
Sbjct: 131 KK 132

[Close]

BLAST of CsaV3_5G005490 vs. ExPASy TrEMBL
Match: A0A0A0KL88 (ZnF_CDGSH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G171700 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 4.6e-55
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MASILPISSPSSSLSTRPHLLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVVD 60
           MASILPISSPSSSLSTRPHLLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVVD
Sbjct: 1   MASILPISSPSSSLSTRPHLLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVVD 60

Query: 61  SVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK 109
           SVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK
Sbjct: 61  SVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK 108

[Close]

BLAST of CsaV3_5G005490 vs. ExPASy TrEMBL
Match: A0A5A7UKN7 (CDGSH iron-sulfur domain-containing protein NEET OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold231G00670 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.5e-45
Identity = 98/109 (89.91%), Postives = 102/109 (93.58%), Query Frame = 0


Query: 1   MASILPISSPSSSLSTRPH-LLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVV 60
           MASI+ ISSPSSSLSTR   LL R+FNDNGRRRTVVVRAE GSSGEHINPAIRKSE+KVV
Sbjct: 1   MASIVAISSPSSSLSTRAGLLLPRSFNDNGRRRTVVVRAE-GSSGEHINPAIRKSEEKVV 60

Query: 61  DSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK 109
           DSVL+ ELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK
Sbjct: 61  DSVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK 108

[Close]

BLAST of CsaV3_5G005490 vs. ExPASy TrEMBL
Match: A0A1S3CTC1 (CDGSH iron-sulfur domain-containing protein NEET OS=Cucumis melo OX=3656 GN=LOC103504660 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.5e-45
Identity = 98/109 (89.91%), Postives = 102/109 (93.58%), Query Frame = 0


Query: 1   MASILPISSPSSSLSTRPH-LLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVV 60
           MASI+ ISSPSSSLSTR   LL R+FNDNGRRRTVVVRAE GSSGEHINPAIRKSE+KVV
Sbjct: 1   MASIVAISSPSSSLSTRAGLLLPRSFNDNGRRRTVVVRAE-GSSGEHINPAIRKSEEKVV 60

Query: 61  DSVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK 109
           DSVL+ ELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK
Sbjct: 61  DSVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK 108

[Close]

BLAST of CsaV3_5G005490 vs. ExPASy TrEMBL
Match: W9S1F7 (CDGSH iron-sulfur domain-containing protein 2A OS=Morus notabilis OX=981085 GN=L484_012960 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.6e-31
Identity = 70/90 (77.78%), Postives = 74/90 (82.22%), Query Frame = 0


Query: 19  HLLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCW 78
           H  + NF     RR VVVRAE    G+ INP IRKSE+KVVDSV+V ELSKPLTPYCRCW
Sbjct: 31  HKPTTNFKSRSSRRLVVVRAE----GQAINPEIRKSEEKVVDSVVVTELSKPLTPYCRCW 90

Query: 79  RSGTFPLCDGSHVKHNKATGDNVGPLLLKK 109
           RSGTFPLCDGSHVKHNKATGDNVGPLLLKK
Sbjct: 91  RSGTFPLCDGSHVKHNKATGDNVGPLLLKK 116

[Close]

BLAST of CsaV3_5G005490 vs. ExPASy TrEMBL
Match: A0A6J1K1P5 (CDGSH iron-sulfur domain-containing protein NEET OS=Cucurbita maxima OX=3661 GN=LOC111491613 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.7e-31
Identity = 76/104 (73.08%), Postives = 84/104 (80.77%), Query Frame = 0


Query: 7   ISSPSSSLSTRPHLLSRNFNDNG--RRRTVVVRAEGGSSGEHINPAIRKSEDKVVDSVLV 66
           +++ S+  +TRP     NF   G  RRR VVVRAEG   GE INPAIRKSEDKVVDSV+V
Sbjct: 4   LAATSALPTTRPP--HGNFTVGGMPRRRMVVVRAEG---GEAINPAIRKSEDKVVDSVVV 63

Query: 67  PELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK 109
            +L+KPLTPYCRCWRS TFPLCDGSHVKHNKATGDNVGPLLLKK
Sbjct: 64  ADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKK 102

[Close]

BLAST of CsaV3_5G005490 vs. TAIR 10
Match: AT5G51720.1 (2 iron, 2 sulfur cluster binding )

HSP 1 Score: 136.0 bits (341), Expect = 1.9e-32
Identity = 64/79 (81.01%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 30  RRRTVVVRAEGGSSGEHINPAIRKSEDKVVDSVLVPELSKPLTPYCRCWRSGTFPLCDGS 89
           ++R VVVRAEGG     INP IRK+EDKVVDSV+V ELSK +TPYCRCWRSGTFPLCDGS
Sbjct: 32  QQRMVVVRAEGGGG---INPEIRKNEDKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGS 91

Query: 90  HVKHNKATGDNVGPLLLKK 109
           HVKHNKA GDNVGPLLLKK
Sbjct: 92  HVKHNKANGDNVGPLLLKK 107

The following BLAST results are available for this feature:

BLAST of CsaV3_5G005490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143713.1	9.5e-55	100.00	CDGSH iron-sulfur domain-containing protein NEET [Cucumis sativus] >KGN50388.1 h...	[more]
XP_008467263.1	3.1e-45	89.91	PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Cucumis melo] >KAA0...	[more]
XP_038876467.1	9.9e-36	77.06	CDGSH iron-sulfur domain-containing protein NEET [Benincasa hispida]	[more]
XP_023534172.1	2.5e-31	71.57	CDGSH iron-sulfur domain-containing protein NEET [Cucurbita pepo subsp. pepo]	[more]
XP_010109084.1	3.3e-31	77.78	CDGSH iron-sulfur domain-containing protein NEET isoform X2 [Morus notabilis] >E...	[more]

BLAST of CsaV3_5G005490 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FLI7	2.6e-31	81.01	CDGSH iron-sulfur domain-containing protein NEET OS=Arabidopsis thaliana OX=3702...	[more]
Q7T326	4.8e-17	59.68	CDGSH iron-sulfur domain-containing protein 2 OS=Danio rerio OX=7955 GN=cisd2 PE...	[more]
C1BI29	1.1e-16	58.06	CDGSH iron-sulfur domain-containing protein 2A OS=Oncorhynchus mykiss OX=8022 GN...	[more]
Q6PCF8	1.1e-16	59.68	CDGSH iron-sulfur domain-containing protein 2A OS=Xenopus laevis OX=8355 GN=cisd...	[more]
Q6AZG1	1.1e-16	59.68	CDGSH iron-sulfur domain-containing protein 2B OS=Xenopus laevis OX=8355 GN=cisd...	[more]

BLAST of CsaV3_5G005490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KL88	4.6e-55	100.00	ZnF_CDGSH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G171700 P...	[more]
A0A5A7UKN7	1.5e-45	89.91	CDGSH iron-sulfur domain-containing protein NEET OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3CTC1	1.5e-45	89.91	CDGSH iron-sulfur domain-containing protein NEET OS=Cucumis melo OX=3656 GN=LOC1...	[more]
W9S1F7	1.6e-31	77.78	CDGSH iron-sulfur domain-containing protein 2A OS=Morus notabilis OX=981085 GN=L...	[more]
A0A6J1K1P5	2.7e-31	73.08	CDGSH iron-sulfur domain-containing protein NEET OS=Cucurbita maxima OX=3661 GN=...	[more]

BLAST of CsaV3_5G005490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G51720.1	1.9e-32	81.01	2 iron, 2 sulfur cluster binding	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018967	Iron-binding zinc finger, CDGSH type	SMART	SM00704	znf_cdgsh	coord: 57..96 e-value: 7.6E-9 score: 45.4
IPR018967	Iron-binding zinc finger, CDGSH type	PFAM	PF09360	zf-CDGSH	coord: 67..90 e-value: 3.1E-8 score: 33.7
IPR042216	MitoNEET, CDGSH iron-sulfur domain	GENE3D	3.40.5.90		coord: 63..108 e-value: 1.7E-23 score: 83.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR13680:SF5	CDGSH IRON-SULFUR DOMAIN-CONTAINING PROTEIN 1	coord: 27..108
IPR045131	CDGSH iron-sulfur domain-containing protein 1/2	PANTHER	PTHR13680	CDGSH IRON-SULFUR DOMAIN-CONTAINING PROTEIN 1	coord: 27..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G005490.1	CsaV3_5G005490.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010506	regulation of autophagy
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding