CsaV3_5G005250 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G005250
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr5: 3370229 .. 3370830 (+)
RNA-Seq Expression	CsaV3_5G005250
Synteny	CsaV3_5G005250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAACCTTCAAGCATTATTCACATATAAACAGCAAAGGAAAGAGGATCGCAAGAGATGAACAAAATGGCTTCTTATAAGAAGCACTTAATAATCTTAGCAACTCTCTTGTATCTTATGCTTTTCCTTTCAACCTATGGGGCAGCAAGGATCTTGGATCTAAATGGTACATTTTCTCAACATTTCTATTGTTATTTTTTCTTTGGCTAACCAAGATCCATGAAAAGTTTATAATTTTATGTTTTGATTAATTTTTTTCAGGAAGTATGAAGGTCCGAGAGATCAAGGTTATTGTAGTAGGACGACGAATTGTACGACGAGATTTGGCACATGGAGGAAATTATGGCCCGGGAGTTCAGTGAGATATGATGTTATAATTAAACTAGTTTTCTTCGAGTTTCTTTCTTCTTAAATAACTTGAATGTAGTGCAAAGTATATTGTTAAAAGTTCGATAACATTTCGGTTTGAAACTTCTTTTTTTTTGAAGTACTAATGATTTTAGAGAAGAAAATAATAAGCATATATATGTATATATATTAGAAAGGATGATTAGTACTTCTTGTTTGTTTGTTTTGAAATATATATACATATAACATTATTGTC

mRNA sequence

ATGAACAAAATGGCTTCTTATAAGAAGCACTTAATAATCTTAGCAACTCTCTTGTATCTTATGCTTTTCCTTTCAACCTATGGGGCAGCAAGGATCTTGGATCTAAATGGAAGTATGAAGGTCCGAGAGATCAAGGTTATTGTAGTAGGACGACGAATTGTACGACGAGATTTGGCACATGGAGGAAATTATGGCCCGGGAGTTCAGTGA

Coding sequence (CDS)

ATGAACAAAATGGCTTCTTATAAGAAGCACTTAATAATCTTAGCAACTCTCTTGTATCTTATGCTTTTCCTTTCAACCTATGGGGCAGCAAGGATCTTGGATCTAAATGGAAGTATGAAGGTCCGAGAGATCAAGGTTATTGTAGTAGGACGACGAATTGTACGACGAGATTTGGCACATGGAGGAAATTATGGCCCGGGAGTTCAGTGA

Protein sequence

MNKMASYKKHLIILATLLYLMLFLSTYGAARILDLNGSMKVREIKVIVVGRRIVRRDLAHGGNYGPGVQ*

Homology

[Close]

BLAST of CsaV3_5G005250 vs. NCBI nr
Match: KGN50358.1 (hypothetical protein Csa_000417 [Cucumis sativus])

HSP 1 Score: 134.8 bits (338), Expect = 2.9e-28
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MNKMASYKKHLIILATLLYLMLFLSTYGAARILDLNGSMKVREIKVIVVGRRIVRRDLAH 60
          MNKMASYKKHLIILATLLYLMLFLSTYGAARILDLNGSMKVREIKVIVVGRRIVRRDLAH
Sbjct: 1  MNKMASYKKHLIILATLLYLMLFLSTYGAARILDLNGSMKVREIKVIVVGRRIVRRDLAH 60

Query: 61 GGNYGPGVQ 70
          GGNYGPGVQ
Sbjct: 61 GGNYGPGVQ 69

[Close]

BLAST of CsaV3_5G005250 vs. NCBI nr
Match: KAG6605659.1 (hypothetical protein SDJN03_02976, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.0 bits (188), Expect = 7.1e-11
Identity = 42/66 (63.64%), Postives = 49/66 (74.24%), Query Frame = 0


Query: 4  MASYKKHLIILATLLYLMLFLSTYGAARILDLNGSMKVREIKVIVVGRRIVRRDLAHGGN 63
          M S KKHLI L  +LYLMLFLS+YGAAR+   NG M   E+K I +G RI+RRDLA+GGN
Sbjct: 1  MGSNKKHLIPLVIVLYLMLFLSSYGAARVFIPNGHMNAFEMKPITLG-RIMRRDLAYGGN 60

Query: 64 YGPGVQ 70
          Y PG Q
Sbjct: 61 YSPGKQ 65

[Close]

BLAST of CsaV3_5G005250 vs. NCBI nr
Match: KAG7035570.1 (hypothetical protein SDJN02_02367, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 77.0 bits (188), Expect = 7.1e-11
Identity = 42/66 (63.64%), Postives = 49/66 (74.24%), Query Frame = 0


Query: 4  MASYKKHLIILATLLYLMLFLSTYGAARILDLNGSMKVREIKVIVVGRRIVRRDLAHGGN 63
          M S KKHLI L  +LYLMLFLS+YGAAR+   NG M   E+K I +G RI+RRDLA+GGN
Sbjct: 1  MGSNKKHLIPLVIVLYLMLFLSSYGAARVFIPNGHMNAFEMKPITLG-RIMRRDLAYGGN 60

Query: 64 YGPGVQ 70
          Y PG Q
Sbjct: 61 YSPGKQ 65

[Close]

BLAST of CsaV3_5G005250 vs. ExPASy TrEMBL
Match: A0A0A0KL54 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G168950 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.4e-28
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MNKMASYKKHLIILATLLYLMLFLSTYGAARILDLNGSMKVREIKVIVVGRRIVRRDLAH 60
          MNKMASYKKHLIILATLLYLMLFLSTYGAARILDLNGSMKVREIKVIVVGRRIVRRDLAH
Sbjct: 1  MNKMASYKKHLIILATLLYLMLFLSTYGAARILDLNGSMKVREIKVIVVGRRIVRRDLAH 60

Query: 61 GGNYGPGVQ 70
          GGNYGPGVQ
Sbjct: 61 GGNYGPGVQ 69

The following BLAST results are available for this feature:

BLAST of CsaV3_5G005250 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN50358.1	2.9e-28	100.00	hypothetical protein Csa_000417 [Cucumis sativus]	[more]
KAG6605659.1	7.1e-11	63.64	hypothetical protein SDJN03_02976, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7035570.1	7.1e-11	63.64	hypothetical protein SDJN02_02367, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CsaV3_5G005250 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G005250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KL54	1.4e-28	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G168950 PE=4 SV=1	[more]

BLAST of CsaV3_5G005250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G005250.1	CsaV3_5G005250.1	mRNA