CsaV3_5G004980 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G004980
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5: 3216327 .. 3216679 (-)
RNA-Seq ExpressionCsaV3_5G004980
SyntenyCsaV3_5G004980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGGGTTAATTATTTCCCGGTTCGGGTTGGTCGGGGTGAACCGACCCAAGGCCACATCATTTTAAACATTTATAAATTTAATAGGATTTTCATTTTTCAGTTTTCAGTTTCTTCCTTCGGCGATTTCCCTTCACTCCTTCTTCGGCCTTCAACACCGACCGTCATCTTCATTCTCCTTCCTGTCGGTCATCTTAATCACTTCTCTCAACTCACCGCTTACTACTTTGCTCCCTCGCCGTCGCCCTCGCCGTCACAGTCGACCTACCTCACGGTCGATCTCCCTCGCGGCCTTTCTCTCATTCCACTCCATCGGTCTCTCTCACGGCCTTTCTCTCCTCCACTCCCTTGA

mRNA sequence

ATGTTTTCAGTTTCTTCCTTCGGCGATTTCCCTTCACTCCTTCTTCGGCCTTCAACACCGACCGTCATCTTCATTCTCCTTCCTGTCGGTCATCTTAATCACTTCTCTCAACTCACCGCTTACTACTTTGCTCCCTCGCCGTCGCCCTCGCCGTCACAGTCGACCTACCTCACGGTCGATCTCCCTCGCGGCCTTTCTCTCATTCCACTCCATCGGTCTCTCTCACGGCCTTTCTCTCCTCCACTCCCTTGA

Coding sequence (CDS)

ATGTTTTCAGTTTCTTCCTTCGGCGATTTCCCTTCACTCCTTCTTCGGCCTTCAACACCGACCGTCATCTTCATTCTCCTTCCTGTCGGTCATCTTAATCACTTCTCTCAACTCACCGCTTACTACTTTGCTCCCTCGCCGTCGCCCTCGCCGTCACAGTCGACCTACCTCACGGTCGATCTCCCTCGCGGCCTTTCTCTCATTCCACTCCATCGGTCTCTCTCACGGCCTTTCTCTCCTCCACTCCCTTGA

Protein sequence

MFSVSSFGDFPSLLLRPSTPTVIFILLPVGHLNHFSQLTAYYFAPSPSPSPSQSTYLTVDLPRGLSLIPLHRSLSRPFSPPLP*
Homology
[Close]
BLAST of CsaV3_5G004980 vs. NCBI nr
Match: KAE8647922.1 (hypothetical protein Csa_000587 [Cucumis sativus])

HSP 1 Score: 169.1 bits (427), Expect = 1.6e-38
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0 

Query: 1  MFSVSSFGDFPSLLLRPSTPTVIFILLPVGHLNHFSQLTAYYFAPSPSPSPSQSTYLTVD 60
          MFSVSSFGDFPSLLLRPSTPTVIFILLPVGHLNHFSQLTAYYFAPSPSPSPSQSTYLTVD
Sbjct: 1  MFSVSSFGDFPSLLLRPSTPTVIFILLPVGHLNHFSQLTAYYFAPSPSPSPSQSTYLTVD 60

Query: 61 LPRGLSLIPLHRSLSRPFSPPLP 84
          LPRGLSLIPLHRSLSRPFSPPLP
Sbjct: 61 LPRGLSLIPLHRSLSRPFSPPLP 83

The following BLAST results are available for this feature:
BLAST of CsaV3_5G004980 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8647922.11.6e-38100.00hypothetical protein Csa_000587 [Cucumis sativus][more]
BLAST of CsaV3_5G004980 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G004980 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G004980 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G004980.1CsaV3_5G004980.1mRNA