CsaV3_5G003500 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G003500
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionTy3-gypsy retroelement transposase
Locationchr5: 2238507 .. 2238892 (+)
RNA-Seq ExpressionCsaV3_5G003500
SyntenyCsaV3_5G003500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGGTTTGAAGGCCGAAAGAGGAAGAAGAAGGTCTATCGTCGTCCACCGTTCATTGCTTGTCGTCACCCTCGACGCTTGTGAGCTGCCGTCTGCCCCTCGCCGGTAAGTGGTTGTTTTTTGTTTTTTATTTTTGTTTTGGTTTAAGTTTGAGAAAAAAAAAATAGTAAATAGGTATGTTAATTTTGTGATTGTCAAGGCCATCTCTTTTGTGTTTTTCTCATTGTCGTCGTCATCCGCCACTACGCTTCTACTGTTGCCCTCATCCGCTCCTTGCCAGTAAGTCTTTGTTTTTATTTTTTTTATTTATTTTGGTTTGAGGTCGAAAAAAAATATTAAATATGTGTGTTAGTCTTTGTTGTTGTTGATCTAGGATCCGATTAG

mRNA sequence

ATGAAAGGTTTGAAGGCCGAAAGAGGAAGAAGAAGGTCTATCGTCGTCCACCGTTCATTGCTTGTCGTCACCCTCGACGCTTGTGAGCTGCCGTCTGCCCCTCGCCGGCCATCTCTTTTGTGTTTTTCTCATTGTCGTCGTCATCCGCCACTACGCTTCTACTGTTGCCCTCATCCGCTCCTTGCCAGATCCGATTAG

Coding sequence (CDS)

ATGAAAGGTTTGAAGGCCGAAAGAGGAAGAAGAAGGTCTATCGTCGTCCACCGTTCATTGCTTGTCGTCACCCTCGACGCTTGTGAGCTGCCGTCTGCCCCTCGCCGGCCATCTCTTTTGTGTTTTTCTCATTGTCGTCGTCATCCGCCACTACGCTTCTACTGTTGCCCTCATCCGCTCCTTGCCAGATCCGATTAG

Protein sequence

MKGLKAERGRRRSIVVHRSLLVVTLDACELPSAPRRPSLLCFSHCRRHPPLRFYCCPHPLLARSD*
Homology
BLAST of CsaV3_5G003500 vs. NCBI nr
Match: KGN50171.1 (hypothetical protein Csa_000553 [Cucumis sativus])

HSP 1 Score: 141.0 bits (354), Expect = 3.8e-30
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0

Query: 1  MKGLKAERGRRRSIVVHRSLLVVTLDACELPSAPRRPSLLCFSHCRRHPPLRFYCCPHPL 60
          MKGLKAERGRRRSIVVHRSLLVVTLDACELPSAPRRPSLLCFSHCRRHPPLRFYCCPHPL
Sbjct: 1  MKGLKAERGRRRSIVVHRSLLVVTLDACELPSAPRRPSLLCFSHCRRHPPLRFYCCPHPL 60

Query: 61 LARSD 66
          LARSD
Sbjct: 61 LARSD 65

BLAST of CsaV3_5G003500 vs. NCBI nr
Match: TYK20517.1 (ty3-gypsy retroelement transposase [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 4.6e-04
Identity = 27/59 (45.76%), Postives = 35/59 (59.32%), Query Frame = 0

Query: 5  KAERGRRRSIVVHRSLLVVTLDACELPSAPRRPSLLCFSHCRRHPPLRFYCCPHPLLAR 64
          K E      + +H  LLV+T+DACE  S P R SL+CFS C R PPL F+    PL+ +
Sbjct: 11 KEEEKGPSPLAIHHLLLVITIDACEPLSVPHRSSLVCFSPCFRCPPLPFHHRHRPLVGK 69

BLAST of CsaV3_5G003500 vs. ExPASy TrEMBL
Match: A0A0A0KR16 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G157300 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.8e-30
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0

Query: 1  MKGLKAERGRRRSIVVHRSLLVVTLDACELPSAPRRPSLLCFSHCRRHPPLRFYCCPHPL 60
          MKGLKAERGRRRSIVVHRSLLVVTLDACELPSAPRRPSLLCFSHCRRHPPLRFYCCPHPL
Sbjct: 1  MKGLKAERGRRRSIVVHRSLLVVTLDACELPSAPRRPSLLCFSHCRRHPPLRFYCCPHPL 60

Query: 61 LARSD 66
          LARSD
Sbjct: 61 LARSD 65

BLAST of CsaV3_5G003500 vs. ExPASy TrEMBL
Match: A0A5D3DAB4 (Ty3-gypsy retroelement transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G00940 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.2e-04
Identity = 27/59 (45.76%), Postives = 35/59 (59.32%), Query Frame = 0

Query: 5  KAERGRRRSIVVHRSLLVVTLDACELPSAPRRPSLLCFSHCRRHPPLRFYCCPHPLLAR 64
          K E      + +H  LLV+T+DACE  S P R SL+CFS C R PPL F+    PL+ +
Sbjct: 11 KEEEKGPSPLAIHHLLLVITIDACEPLSVPHRSSLVCFSPCFRCPPLPFHHRHRPLVGK 69

BLAST of CsaV3_5G003500 vs. ExPASy TrEMBL
Match: A0A5A7T409 (Ty3-gypsy retroelement transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G003090 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.0e-04
Identity = 27/57 (47.37%), Postives = 34/57 (59.65%), Query Frame = 0

Query: 5  KAERGRRRSIVVHRSLLVVTLDACELPSAPRRPSLLCFSHCRRHPPLRFYCCPHPLL 62
          K E      + +H  LLV+T+DACE  S P R SL+CFS C R PPL F+    PL+
Sbjct: 11 KEEEKGPSPLAIHHLLLVITIDACEPLSVPHRSSLVCFSPCFRCPPLPFHHRHRPLV 67

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN50171.13.8e-30100.00hypothetical protein Csa_000553 [Cucumis sativus][more]
TYK20517.14.6e-0445.76ty3-gypsy retroelement transposase [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KR161.8e-30100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G157300 PE=4 SV=1[more]
A0A5D3DAB42.2e-0445.76Ty3-gypsy retroelement transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
A0A5A7T4095.0e-0447.37Ty3-gypsy retroelement transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G003500.1CsaV3_5G003500.1mRNA