CsaV3_5G003280 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G003280
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	RanBD1 domain-containing protein
Location	chr5: 2055334 .. 2060752 (+)
RNA-Seq Expression	CsaV3_5G003280
Synteny	CsaV3_5G003280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGGGAAGTTGAAAAGTGTAGGGGAGTATATTTGTCATTTGAAGTAAAATTATTAGTATAATGAGAAAAGGCCGTGGGCTTCTAAGGCCGAGTTGGTGGGCCAGATAAGGAAATGGGCTCCACATGGGAAAAAAGACAAACAGCTAAGCAAAGCGGAAGGCGAAGACCACGTGGTGTTTCTCTTCGCGGCGAACAGATCCAACGGCTCCAATTGAAAATATGGTTGGACGATGATCCAAGGGGCGAAATGAATTGCATTTAATTAATTAGCATAAATCTCAGTTCCCCACTTCCAAAAATGTTCCTTTTCTCCTCTTTTGAGCAAGCTACTCTGAAGCAATAAAAGTTGTAAAATTTTGGAAAACCCTAAATCATAATCTTTCACTGTTCTTCGCTTTTTTCACAGGATTTCTTCAAAAATCATGGGAGGAACTAAGCGCTCTGCCTTATCAGACTCGATTCCCGACACTTACGATTCTGTGGTATTTTCCTTTTTCTTCTTCAAACCTGATTCGTTCTTCCTCATATCCTACTTTTGATTTTTCTATATATATATATATATATTTTACAGCTTCAATGATGATTATTAATTTTTTTTTTTTTATTTGTGTGTGTGTGTGTACATGAATTGGTATAGACTCTGCTTTGCTTCATTGATTTTTTTTTTTTTTACTTCCTCTGTTTAGTTAGGATTGAGCATTTCCCCAATATTTAGAATCTAACTAGCAGAATAGTTCCGTCTAGTTGAACTCCGTTGGGTTAATTAGTTTCATTTAGTCGGTGCTTTTTGTCTGCTTATAGTAATCTTAGCTTTCTTTGAGTGTTTGGAAATCTTCCTTTAAGTCATAAGGTTGGCGCGTTTTTACTTTATTGAATTATTCATTCAGTTCTATTTGGGGTTATTTTTTATCGAATTTTCTACAAAATAACTGGAAGTCAATTAATTACGGGTTTGTTGCTAATTGATAAAGCACTCCCTGATTGAAGAATGAATCACATGATGTCTGGAAGGCTTTACTATTGTAATTTTCTCTCTCTCTCTTATTCGCAAATTTAATGCAGTTTGGTAACAAAAGAATATTGGCGGGATCCTCATTTGATATTCAGAGGGCAGAACCATCTCAACGACAGAAGACAAAAACACCTACGCTTGATGTGCGCCGGGCGGAGTCATCTCAGCAGCATGTGAGAGCACTTAACACTCAATTCGCAAGGTCTAACTGTGATTACCATATTTCAAAAGTGTTTCTTTTGTTTTATTATTTTCTACTACACGTTCTTGACACCATATATTAATAAATTCAAATGAACCTCTTGATCATTTGTTATCTTGCATTGTCGTTTCTTATACTTACTGATTTTATTGTTTTTCTTTTTTAAAGTAGCTAGTTGTACTTGCAACTGTTTATGATTTTAGAATGTTGGAAGTGTTAATATTGGGATTTCATACCCATATGGTATTAATTGTTTACAATATTTTTTGTTTATACAGTTGGGTGCAGTCACAATTAGCCAATCATCCAGATGAACTTTGGGAAGATGGTATCCGCGATTACTTGACTCATGCCTCAAGTATTATGGTAAGTGCTCATCATGTTTTGTTCTGCTTTTATCTGAACTCCAGCTTGGTGTTCTATAATCCTGCTTTATGACTTCATCAAGCCCTTGCAGATGTGCAACATCTTTAACACAATAAGAAATCAATTTGACTTGTTTAAGAATTTCTAACTACTATCAAACATTCATCTTTCTTTTGGTAAGGCAAAATTAATGTTCCCTGCTTTATATGCCATTAATTTATCATATCATAAGTTTGTTTGTTTAAAGTATTAAGTTCTACACCAAGTGACAGACTTGCATATCCAAATTATTTGTCAAATCAGTATCCATGACTTAATTTTTTTGTATTCAAAGGAAAAATTTAGTGATATTGTTGAGTGGCTCAAAGCAAACGCTGTTAAAGGAGAAAGTTCACCTTCTACCGGATCTCCCACAGCTGAAAAGAAGACAGAAATTGAACACAAGAATACTGATGTAAAACTATTTCAAGGACAAACTAATTTTGCACCTATCAGTGCAACTACTAGCAGTGCAACTTCATGGACCTCTGGGGCATTCTTCAACCATCAAACTCCTAGCATATTTGGTAACTACTTTTCTAGCATTGCAACTTCATGGACCTCTTATGTTATGATGTGATCTCAATGAATAAATAAAGATTGACATTTTGTTGAAGTTCCACTTATTCCAGATGTTTATATTTGATTAGGCTCGGACTAATTCTTTTATATATATATATATATATATATATATATATATATGAATTGTTTGTAGGAACAAGAACTACCATAACAACCCTGTTTTTGGACTCAAGTTTTTGCATTTGATACATGAACTTTTAACATTTACTAGCAACTTATTACCTTCATCTGTTCCTTTGTTCCTATGATTAAGTTCTTAGAGACCTAAAAGTAGTATATTTCGTTATGCAACTAGTATTGAACTATCCCATAATTCCTTAGCTGGTTCTAAATGGACTCCTTTTCTTCTCTTCCTTTGGCTAGGATTACAAAGTTCAGTTCCTGCCAATGGTGTTTCTGTTGGCCAGACTGCAGTTCCAACTTCAGAGAGTGTGGATGACGGTGAGATTCTTGAGTTTTTGCACTTTTCAGTTACAATGTTGCACCAAAGATGACCTGAGACTAACAAATTATAAATAAGTTTGAGTCGTCGTGTTGATGGAATCTGTTATTGACCGTTCTCAATGCTTGAATTTTGAGCTCAAAAGGGTTAGATTAAATGTATTATAGATTATCTACTGTCATTACTTTCCAAATTTGTTGATTTATCTTCTACAGAAACTTGTACTCAAATTTTATAGAATGGCACATCTTATGACTCATAATTTTCAAGAATCACTATATGTGGGGAGGGAAGGAGTGGGGGAATTCGGTCAGGATTGGTTTTTTGAGTTGATGCAAATGCCTTACAGCATGTAAATTAGGGGAGGGAGAGAGGGCTGTTTTAAATTGAAAGATGGCGTTGAGGGGAGCAAGGATCTTAATTGTGAGTTCAGAATCTTCCTTGGTCTGGGGCATATTTGATTGTTATTTTTAATTATATAGTGCCACGTTCTTAGTTTGAAGCCTTGTTTTGGTTGTAGAAAATGACTTGGAGCAGCCAAGCAGCCCATCTGTAAAGAAGTCTGAAGAGAAAGGGGTGGTTGTAGTGCACGAAGTTAAGTGCAAGCTTTATGTGAAGGTATTTGCTTCTGAAAAGTGGAATTTAAATGGTTCTATTTTCAGCATAAAGTTAATTAACAGCTCAGAAAGTCATTCTGTTTTTCGATGAGCACTTTTCAACATTTGCATTGTGAGATTTGTTCTAAAATATATATACACACATACATACATACATACATACATAAATAGATATATATTTGGGTAGATGCATGTTGACTTTATTTTATGACCTCTTTCTGGGAGGGGGAACCATTTTGTTTGAATATTTCCTTCTGGTATTCCATTGCTCTCAAAGGAAGAACAGAGGTAGATGTGAACCAGCACTTGAAATGCATTGTTATGACTGCTGTGAGAGTTGGGACCAGATAGCTTGATTGAGCTACTTGTTTTCAAACAGAGATAGTAGTCTGTTCTTTCTGTTGCAGTAGTTTTCCCTTGCAACTTTTATGTACGAGACAGCATAATTTGAGTATGGATATTATTTTATGGTTTCTGCTGAAGGATGAATGCAAAATGTTGCAAGTGATTTTAGAATATATGGAAAAATTTGGTGATGATAATAGTGCACGAGTAGTTTTCTGGAGGTATCCTTGGCATTCCAATTATTTTGTTGTTGACTCGTATCAATTGGAGCATTATTTTTGGAAATTGAGGAGGGAAAATTGGATGATCAAATGGATACAATGGAAGCACAAGCACCTTTTGGAGGAGTATGCAAGGCGTAGCGAAATCAATTGATGGCAAATAAGAATATTGCAACATCCTTGAAGGGATAAGGGTAGGTTGCTGGGCTTCTGCATGTTGTATCGCTGTGGTAGCCTCTGTGTAAAGATTGTGGTAGGATGTACAACCAACGACAAAATTTTCTTGGAGGAGCAGCTGACGAAGGCAGTGAATTAACTAGTGACTAAGAGATGTCTTGGGCTGTGGAGTCTAGAAAACCTCTTTAAATTGTTAAAGATTTGTATCTGTTGGTGTTTTTGATTGCCTAATTGTCTGAATATAATCAGTTTATCATGATCCATTAGATGAACTGTCTTGCAACGTGAGTGCAAATGAAGTTGTAAAGTAGTAAAAATGGAAAAAAAGTTATATTAGTTGCTTCATGATATATCCATATAGAAAATTTACTGTTGATGGATATATTGCTTCTGTCTTCCGTTATTTTTATTTGCCTTGTGTTTAATCTGACTTAAGATTTCATTTTTTTAGTACTCTTAGGATCTATAGATTAGCTACTGTATCCTTGACACACTACGTATGTGTGTTGTGTACATGCAGTCCACCGATCCAGCAGATAAAGATGCATGGAAAGACAAAGGCACAGGGCAGCTTTCCATAAAATGCAAGGAGGGTATCAGCAAGGGTACAAAGGAATCCAAACCAACGATTTTAATTCGAAATGATGTACGATTTATCATGCTTAATCTTTACTCTTTGATAATACTTCTTGTTTATCCCAGCTCTCTCTTCCCTAAGTCTTTCTTAACAACTGTGGTTGTTGGTTTATTCTTTTATTTCTCTCTCTATATATCTTACAATGTGTTGTATATTCTACTTATAGGTGGGGAGACTGCTTCTGAATGCTTTAATCTATCCAGGGATCAAAACAAATATTCAAAAGAATTCCATTGTTGCAATATTCCATACTTCGGTAATGTTTATCTTCATACCAATTATCAACATATTTGTATAACTTGGTCAGAAATAACGTGTGCTAGGAAATTCCCAAAGACATCCGTAGCTAATATTCTATTTTGTTTCTTGTAGAGTGAAGGCAATACTAACGATAATAGCGATAAAGATAAAGTTGTGGCACGAACATACTTGATTCGATTAAAAACAGAGGACGATCGGAATAAGCTGGCAACAGCAATTCAAGAATGCACTCCGGCACCTTGAGAGAGAGAGAGAGAGAGATTAAAGATGGTGTCTTTTAGAGGGGAAACCCTTTTATATGAGAAGAGAATTTTGTCAGTCTTATTTTCTTTGCCCCCATTTGTGAAGGGGGGTTTCTTCGGAAGACAAGATCAGTTTAAAATTCTAAATTGATCTCTCTACCAAATGAATCTACTTCTTTTAAAGAGAGGCTGAGGCAGTTGTACTATAAACAAGAGAATGAATGCTCTGTTTTATTTAGTGTAGCAATACAATAATGCAAAATTTCTTGGTTTCTC

mRNA sequence

ATGTGCGCCGGGCGGAGTCATCTCAGCAGCATTTGGGTGCAGTCACAATTAGCCAATCATCCAGATGAACTTTGGGAAGATGGTATCCGCGATTACTTGACTCATGCCTCAAGTATTATGGAAAAATTTAGTGATATTGTTGAGTGGCTCAAAGCAAACGCTGTTAAAGGAGAAAGTTCACCTTCTACCGGATCTCCCACAGCTGAAAAGAAGACAGAAATTGAACACAAGAATACTGATGTAAAACTATTTCAAGGACAAACTAATTTTGCACCTATCAGTGCAACTACTAGCAGTGCAACTTCATGGACCTCTGGGGCATTCTTCAACCATCAAACTCCTAGCATATTTGGATTACAAAGTTCAGTTCCTGCCAATGGTGTTTCTGTTGGCCAGACTGCAGTTCCAACTTCAGAGAGTGTGGATGACGAAAATGACTTGGAGCAGCCAAGCAGCCCATCTGTAAAGAAGTCTGAAGAGAAAGGGGTGGTTGTAGTGCACGAAGTTAAGTGCAAGCTTTATGTGAAGTCCACCGATCCAGCAGATAAAGATGCATGGAAAGACAAAGGCACAGGGCAGCTTTCCATAAAATGCAAGGAGGGTATCAGCAAGGGTACAAAGGAATCCAAACCAACGATTTTAATTCGAAATGATGTGGGGAGACTGCTTCTGAATGCTTTAATCTATCCAGGGATCAAAACAAATATTCAAAAGAATTCCATTGTTGCAATATTCCATACTTCGAGTGAAGGCAATACTAACGATAATAGCGATAAAGATAAAGTTGTGGCACGAACATACTTGATTCGATTAAAAACAGAGGACGATCGGAATAAGCTGGCAACAGCAATTCAAGAATGCACTCCGGCACCTTGA

Coding sequence (CDS)

ATGTGCGCCGGGCGGAGTCATCTCAGCAGCATTTGGGTGCAGTCACAATTAGCCAATCATCCAGATGAACTTTGGGAAGATGGTATCCGCGATTACTTGACTCATGCCTCAAGTATTATGGAAAAATTTAGTGATATTGTTGAGTGGCTCAAAGCAAACGCTGTTAAAGGAGAAAGTTCACCTTCTACCGGATCTCCCACAGCTGAAAAGAAGACAGAAATTGAACACAAGAATACTGATGTAAAACTATTTCAAGGACAAACTAATTTTGCACCTATCAGTGCAACTACTAGCAGTGCAACTTCATGGACCTCTGGGGCATTCTTCAACCATCAAACTCCTAGCATATTTGGATTACAAAGTTCAGTTCCTGCCAATGGTGTTTCTGTTGGCCAGACTGCAGTTCCAACTTCAGAGAGTGTGGATGACGAAAATGACTTGGAGCAGCCAAGCAGCCCATCTGTAAAGAAGTCTGAAGAGAAAGGGGTGGTTGTAGTGCACGAAGTTAAGTGCAAGCTTTATGTGAAGTCCACCGATCCAGCAGATAAAGATGCATGGAAAGACAAAGGCACAGGGCAGCTTTCCATAAAATGCAAGGAGGGTATCAGCAAGGGTACAAAGGAATCCAAACCAACGATTTTAATTCGAAATGATGTGGGGAGACTGCTTCTGAATGCTTTAATCTATCCAGGGATCAAAACAAATATTCAAAAGAATTCCATTGTTGCAATATTCCATACTTCGAGTGAAGGCAATACTAACGATAATAGCGATAAAGATAAAGTTGTGGCACGAACATACTTGATTCGATTAAAAACAGAGGACGATCGGAATAAGCTGGCAACAGCAATTCAAGAATGCACTCCGGCACCTTGA

Protein sequence

MCAGRSHLSSIWVQSQLANHPDELWEDGIRDYLTHASSIMEKFSDIVEWLKANAVKGESSPSTGSPTAEKKTEIEHKNTDVKLFQGQTNFAPISATTSSATSWTSGAFFNHQTPSIFGLQSSVPANGVSVGQTAVPTSESVDDENDLEQPSSPSVKKSEEKGVVVVHEVKCKLYVKSTDPADKDAWKDKGTGQLSIKCKEGISKGTKESKPTILIRNDVGRLLLNALIYPGIKTNIQKNSIVAIFHTSSEGNTNDNSDKDKVVARTYLIRLKTEDDRNKLATAIQECTPAP*

Homology

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BLAST of CsaV3_5G003280 vs. NCBI nr
Match: KAE8647872.1 (hypothetical protein Csa_000090 [Cucumis sativus])

HSP 1 Score: 574.3 bits (1479), Expect = 5.9e-160
Identity = 291/291 (100.00%), Postives = 291/291 (100.00%), Query Frame = 0


Query: 1   MCAGRSHLSSIWVQSQLANHPDELWEDGIRDYLTHASSIMEKFSDIVEWLKANAVKGESS 60
           MCAGRSHLSSIWVQSQLANHPDELWEDGIRDYLTHASSIMEKFSDIVEWLKANAVKGESS
Sbjct: 1   MCAGRSHLSSIWVQSQLANHPDELWEDGIRDYLTHASSIMEKFSDIVEWLKANAVKGESS 60

Query: 61  PSTGSPTAEKKTEIEHKNTDVKLFQGQTNFAPISATTSSATSWTSGAFFNHQTPSIFGLQ 120
           PSTGSPTAEKKTEIEHKNTDVKLFQGQTNFAPISATTSSATSWTSGAFFNHQTPSIFGLQ
Sbjct: 61  PSTGSPTAEKKTEIEHKNTDVKLFQGQTNFAPISATTSSATSWTSGAFFNHQTPSIFGLQ 120

Query: 121 SSVPANGVSVGQTAVPTSESVDDENDLEQPSSPSVKKSEEKGVVVVHEVKCKLYVKSTDP 180
           SSVPANGVSVGQTAVPTSESVDDENDLEQPSSPSVKKSEEKGVVVVHEVKCKLYVKSTDP
Sbjct: 121 SSVPANGVSVGQTAVPTSESVDDENDLEQPSSPSVKKSEEKGVVVVHEVKCKLYVKSTDP 180

Query: 181 ADKDAWKDKGTGQLSIKCKEGISKGTKESKPTILIRNDVGRLLLNALIYPGIKTNIQKNS 240
           ADKDAWKDKGTGQLSIKCKEGISKGTKESKPTILIRNDVGRLLLNALIYPGIKTNIQKNS
Sbjct: 181 ADKDAWKDKGTGQLSIKCKEGISKGTKESKPTILIRNDVGRLLLNALIYPGIKTNIQKNS 240

Query: 241 IVAIFHTSSEGNTNDNSDKDKVVARTYLIRLKTEDDRNKLATAIQECTPAP 292
           IVAIFHTSSEGNTNDNSDKDKVVARTYLIRLKTEDDRNKLATAIQECTPAP
Sbjct: 241 IVAIFHTSSEGNTNDNSDKDKVVARTYLIRLKTEDDRNKLATAIQECTPAP 291

[Close]

BLAST of CsaV3_5G003280 vs. NCBI nr
Match: XP_004143935.1 (uncharacterized protein LOC101205107 [Cucumis sativus])

HSP 1 Score: 551.6 bits (1420), Expect = 4.1e-153
Identity = 280/280 (100.00%), Postives = 280/280 (100.00%), Query Frame = 0


Query: 12  WVQSQLANHPDELWEDGIRDYLTHASSIMEKFSDIVEWLKANAVKGESSPSTGSPTAEKK 71
           WVQSQLANHPDELWEDGIRDYLTHASSIMEKFSDIVEWLKANAVKGESSPSTGSPTAEKK
Sbjct: 72  WVQSQLANHPDELWEDGIRDYLTHASSIMEKFSDIVEWLKANAVKGESSPSTGSPTAEKK 131

Query: 72  TEIEHKNTDVKLFQGQTNFAPISATTSSATSWTSGAFFNHQTPSIFGLQSSVPANGVSVG 131
           TEIEHKNTDVKLFQGQTNFAPISATTSSATSWTSGAFFNHQTPSIFGLQSSVPANGVSVG
Sbjct: 132 TEIEHKNTDVKLFQGQTNFAPISATTSSATSWTSGAFFNHQTPSIFGLQSSVPANGVSVG 191

Query: 132 QTAVPTSESVDDENDLEQPSSPSVKKSEEKGVVVVHEVKCKLYVKSTDPADKDAWKDKGT 191
           QTAVPTSESVDDENDLEQPSSPSVKKSEEKGVVVVHEVKCKLYVKSTDPADKDAWKDKGT
Sbjct: 192 QTAVPTSESVDDENDLEQPSSPSVKKSEEKGVVVVHEVKCKLYVKSTDPADKDAWKDKGT 251

Query: 192 GQLSIKCKEGISKGTKESKPTILIRNDVGRLLLNALIYPGIKTNIQKNSIVAIFHTSSEG 251
           GQLSIKCKEGISKGTKESKPTILIRNDVGRLLLNALIYPGIKTNIQKNSIVAIFHTSSEG
Sbjct: 252 GQLSIKCKEGISKGTKESKPTILIRNDVGRLLLNALIYPGIKTNIQKNSIVAIFHTSSEG 311

Query: 252 NTNDNSDKDKVVARTYLIRLKTEDDRNKLATAIQECTPAP 292
           NTNDNSDKDKVVARTYLIRLKTEDDRNKLATAIQECTPAP
Sbjct: 312 NTNDNSDKDKVVARTYLIRLKTEDDRNKLATAIQECTPAP 351

[Close]

BLAST of CsaV3_5G003280 vs. NCBI nr
Match: XP_008437206.1 (PREDICTED: uncharacterized protein LOC103482703 isoform X2 [Cucumis melo])

HSP 1 Score: 539.3 bits (1388), Expect = 2.1e-149
Identity = 271/291 (93.13%), Postives = 279/291 (95.88%), Query Frame = 0


Query: 1   MCAGRSHLSSIWVQSQLANHPDELWEDGIRDYLTHASSIMEKFSDIVEWLKANAVKGESS 60
           MCAGRS L SIWVQSQLANHPDELWE G+RDYLTHASSIMEKFSDIVEWLKANAVKGESS
Sbjct: 1   MCAGRSRLGSIWVQSQLANHPDELWEGGVRDYLTHASSIMEKFSDIVEWLKANAVKGESS 60

Query: 61  PSTGSPTAEKKTEIEHKNTDVKLFQGQTNFAPISATTSSATSWTSGAFFNHQTPSIFGLQ 120
           PSTGSPT EKKTEIEH+NTD+K FQGQT F P SATT+SATSWTSGAFFNHQ PSIFGLQ
Sbjct: 61  PSTGSPTTEKKTEIEHQNTDLKPFQGQTGFPPTSATTNSATSWTSGAFFNHQAPSIFGLQ 120

Query: 121 SSVPANGVSVGQTAVPTSESVDDENDLEQPSSPSVKKSEEKGVVVVHEVKCKLYVKSTDP 180
           +SVPANGVSVGQTAVPTSES DDENDLEQPSSPSVKKSEEKGVVVVHEVKCKLYVKSTDP
Sbjct: 121 NSVPANGVSVGQTAVPTSESADDENDLEQPSSPSVKKSEEKGVVVVHEVKCKLYVKSTDP 180

Query: 181 ADKDAWKDKGTGQLSIKCKEGISKGTKESKPTILIRNDVGRLLLNALIYPGIKTNIQKNS 240
           ADKDAWKDKGTGQLSIKCKEGISKG+KESKPTI+IRNDVGRLLLNALIYPGIKTN QKNS
Sbjct: 181 ADKDAWKDKGTGQLSIKCKEGISKGSKESKPTIVIRNDVGRLLLNALIYPGIKTNTQKNS 240

Query: 241 IVAIFHTSSEGNTNDNSDKDKVVARTYLIRLKTEDDRNKLATAIQECTPAP 292
           IVAIFHTSSEG+TNDNSDKDKVVARTYLIRLKTEDDRNKLATAIQEC PAP
Sbjct: 241 IVAIFHTSSEGDTNDNSDKDKVVARTYLIRLKTEDDRNKLATAIQECAPAP 291

[Close]

BLAST of CsaV3_5G003280 vs. NCBI nr
Match: XP_038875849.1 (uncharacterized protein LOC120068214 isoform X2 [Benincasa hispida])

HSP 1 Score: 529.3 bits (1362), Expect = 2.2e-146
Identity = 267/291 (91.75%), Postives = 275/291 (94.50%), Query Frame = 0


Query: 1   MCAGRSHLSSIWVQSQLANHPDELWEDGIRDYLTHASSIMEKFSDIVEWLKANAVKGESS 60
           MCAGRSHLSSIWVQSQLANHPDELWEDG+RDYLTHASSIMEKFSDIVEWLKAN VKGESS
Sbjct: 1   MCAGRSHLSSIWVQSQLANHPDELWEDGVRDYLTHASSIMEKFSDIVEWLKANTVKGESS 60

Query: 61  PSTGSPTAEKKTEIEHKNTDVKLFQGQTNFAPISATTSSATSWTSGAFFNHQTPSIFGLQ 120
           PSTGS  AEKKTE E KNTDVKLFQGQT FAP SATTSS TSWTSGAFFNHQ PSIFGLQ
Sbjct: 61  PSTGSSIAEKKTETERKNTDVKLFQGQTGFAPTSATTSSTTSWTSGAFFNHQAPSIFGLQ 120

Query: 121 SSVPANGVSVGQTAVPTSESVDDENDLEQPSSPSVKKSEEKGVVVVHEVKCKLYVKSTDP 180
           +SV ANGVSVGQTAVPTSE+ DDENDLEQPSSPSVKKSEEKGVVVVHEVKCKLYVKSTDP
Sbjct: 121 NSVLANGVSVGQTAVPTSENADDENDLEQPSSPSVKKSEEKGVVVVHEVKCKLYVKSTDP 180

Query: 181 ADKDAWKDKGTGQLSIKCKEGISKGTKESKPTILIRNDVGRLLLNALIYPGIKTNIQKNS 240
           ADKDAWKDKGTGQLSIKCKEGISKGTKESKPTI+IRNDVGRLLLNALIYPGIKT+ QKNS
Sbjct: 181 ADKDAWKDKGTGQLSIKCKEGISKGTKESKPTIVIRNDVGRLLLNALIYPGIKTSTQKNS 240

Query: 241 IVAIFHTSSEGNTNDNSDKDKVVARTYLIRLKTEDDRNKLATAIQECTPAP 292
           +VAIFHTSSEG+TN+N DKD VVARTYLIRLKTEDDRNKLA AIQEC PAP
Sbjct: 241 LVAIFHTSSEGDTNENGDKDTVVARTYLIRLKTEDDRNKLAEAIQECAPAP 291

[Close]

BLAST of CsaV3_5G003280 vs. NCBI nr
Match: XP_008437205.1 (PREDICTED: uncharacterized protein LOC103482703 isoform X1 [Cucumis melo] >KAA0042801.1 uncharacterized protein E6C27_scaffold44G003040 [Cucumis melo var. makuwa])

HSP 1 Score: 521.2 bits (1341), Expect = 5.9e-144
Identity = 262/280 (93.57%), Postives = 270/280 (96.43%), Query Frame = 0


Query: 12  WVQSQLANHPDELWEDGIRDYLTHASSIMEKFSDIVEWLKANAVKGESSPSTGSPTAEKK 71
           WVQSQLANHPDELWE G+RDYLTHASSIMEKFSDIVEWLKANAVKGESSPSTGSPT EKK
Sbjct: 72  WVQSQLANHPDELWEGGVRDYLTHASSIMEKFSDIVEWLKANAVKGESSPSTGSPTTEKK 131

Query: 72  TEIEHKNTDVKLFQGQTNFAPISATTSSATSWTSGAFFNHQTPSIFGLQSSVPANGVSVG 131
           TEIEH+NTD+K FQGQT F P SATT+SATSWTSGAFFNHQ PSIFGLQ+SVPANGVSVG
Sbjct: 132 TEIEHQNTDLKPFQGQTGFPPTSATTNSATSWTSGAFFNHQAPSIFGLQNSVPANGVSVG 191

Query: 132 QTAVPTSESVDDENDLEQPSSPSVKKSEEKGVVVVHEVKCKLYVKSTDPADKDAWKDKGT 191
           QTAVPTSES DDENDLEQPSSPSVKKSEEKGVVVVHEVKCKLYVKSTDPADKDAWKDKGT
Sbjct: 192 QTAVPTSESADDENDLEQPSSPSVKKSEEKGVVVVHEVKCKLYVKSTDPADKDAWKDKGT 251

Query: 192 GQLSIKCKEGISKGTKESKPTILIRNDVGRLLLNALIYPGIKTNIQKNSIVAIFHTSSEG 251
           GQLSIKCKEGISKG+KESKPTI+IRNDVGRLLLNALIYPGIKTN QKNSIVAIFHTSSEG
Sbjct: 252 GQLSIKCKEGISKGSKESKPTIVIRNDVGRLLLNALIYPGIKTNTQKNSIVAIFHTSSEG 311

Query: 252 NTNDNSDKDKVVARTYLIRLKTEDDRNKLATAIQECTPAP 292
           +TNDNSDKDKVVARTYLIRLKTEDDRNKLATAIQEC PAP
Sbjct: 312 DTNDNSDKDKVVARTYLIRLKTEDDRNKLATAIQECAPAP 351

[Close]

BLAST of CsaV3_5G003280 vs. ExPASy TrEMBL
Match: A0A0A0KMP1 (RanBD1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G155600 PE=4 SV=1)

HSP 1 Score: 551.6 bits (1420), Expect = 2.0e-153
Identity = 280/280 (100.00%), Postives = 280/280 (100.00%), Query Frame = 0


Query: 12  WVQSQLANHPDELWEDGIRDYLTHASSIMEKFSDIVEWLKANAVKGESSPSTGSPTAEKK 71
           WVQSQLANHPDELWEDGIRDYLTHASSIMEKFSDIVEWLKANAVKGESSPSTGSPTAEKK
Sbjct: 72  WVQSQLANHPDELWEDGIRDYLTHASSIMEKFSDIVEWLKANAVKGESSPSTGSPTAEKK 131

Query: 72  TEIEHKNTDVKLFQGQTNFAPISATTSSATSWTSGAFFNHQTPSIFGLQSSVPANGVSVG 131
           TEIEHKNTDVKLFQGQTNFAPISATTSSATSWTSGAFFNHQTPSIFGLQSSVPANGVSVG
Sbjct: 132 TEIEHKNTDVKLFQGQTNFAPISATTSSATSWTSGAFFNHQTPSIFGLQSSVPANGVSVG 191

Query: 132 QTAVPTSESVDDENDLEQPSSPSVKKSEEKGVVVVHEVKCKLYVKSTDPADKDAWKDKGT 191
           QTAVPTSESVDDENDLEQPSSPSVKKSEEKGVVVVHEVKCKLYVKSTDPADKDAWKDKGT
Sbjct: 192 QTAVPTSESVDDENDLEQPSSPSVKKSEEKGVVVVHEVKCKLYVKSTDPADKDAWKDKGT 251

Query: 192 GQLSIKCKEGISKGTKESKPTILIRNDVGRLLLNALIYPGIKTNIQKNSIVAIFHTSSEG 251
           GQLSIKCKEGISKGTKESKPTILIRNDVGRLLLNALIYPGIKTNIQKNSIVAIFHTSSEG
Sbjct: 252 GQLSIKCKEGISKGTKESKPTILIRNDVGRLLLNALIYPGIKTNIQKNSIVAIFHTSSEG 311

Query: 252 NTNDNSDKDKVVARTYLIRLKTEDDRNKLATAIQECTPAP 292
           NTNDNSDKDKVVARTYLIRLKTEDDRNKLATAIQECTPAP
Sbjct: 312 NTNDNSDKDKVVARTYLIRLKTEDDRNKLATAIQECTPAP 351

[Close]

BLAST of CsaV3_5G003280 vs. ExPASy TrEMBL
Match: A0A1S3AU01 (uncharacterized protein LOC103482703 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103482703 PE=4 SV=1)

HSP 1 Score: 539.3 bits (1388), Expect = 1.0e-149
Identity = 271/291 (93.13%), Postives = 279/291 (95.88%), Query Frame = 0


Query: 1   MCAGRSHLSSIWVQSQLANHPDELWEDGIRDYLTHASSIMEKFSDIVEWLKANAVKGESS 60
           MCAGRS L SIWVQSQLANHPDELWE G+RDYLTHASSIMEKFSDIVEWLKANAVKGESS
Sbjct: 1   MCAGRSRLGSIWVQSQLANHPDELWEGGVRDYLTHASSIMEKFSDIVEWLKANAVKGESS 60

Query: 61  PSTGSPTAEKKTEIEHKNTDVKLFQGQTNFAPISATTSSATSWTSGAFFNHQTPSIFGLQ 120
           PSTGSPT EKKTEIEH+NTD+K FQGQT F P SATT+SATSWTSGAFFNHQ PSIFGLQ
Sbjct: 61  PSTGSPTTEKKTEIEHQNTDLKPFQGQTGFPPTSATTNSATSWTSGAFFNHQAPSIFGLQ 120

Query: 121 SSVPANGVSVGQTAVPTSESVDDENDLEQPSSPSVKKSEEKGVVVVHEVKCKLYVKSTDP 180
           +SVPANGVSVGQTAVPTSES DDENDLEQPSSPSVKKSEEKGVVVVHEVKCKLYVKSTDP
Sbjct: 121 NSVPANGVSVGQTAVPTSESADDENDLEQPSSPSVKKSEEKGVVVVHEVKCKLYVKSTDP 180

Query: 181 ADKDAWKDKGTGQLSIKCKEGISKGTKESKPTILIRNDVGRLLLNALIYPGIKTNIQKNS 240
           ADKDAWKDKGTGQLSIKCKEGISKG+KESKPTI+IRNDVGRLLLNALIYPGIKTN QKNS
Sbjct: 181 ADKDAWKDKGTGQLSIKCKEGISKGSKESKPTIVIRNDVGRLLLNALIYPGIKTNTQKNS 240

Query: 241 IVAIFHTSSEGNTNDNSDKDKVVARTYLIRLKTEDDRNKLATAIQECTPAP 292
           IVAIFHTSSEG+TNDNSDKDKVVARTYLIRLKTEDDRNKLATAIQEC PAP
Sbjct: 241 IVAIFHTSSEGDTNDNSDKDKVVARTYLIRLKTEDDRNKLATAIQECAPAP 291

[Close]

BLAST of CsaV3_5G003280 vs. ExPASy TrEMBL
Match: A0A5A7TMK5 (RanBD1 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G003040 PE=4 SV=1)

HSP 1 Score: 521.2 bits (1341), Expect = 2.9e-144
Identity = 262/280 (93.57%), Postives = 270/280 (96.43%), Query Frame = 0


Query: 12  WVQSQLANHPDELWEDGIRDYLTHASSIMEKFSDIVEWLKANAVKGESSPSTGSPTAEKK 71
           WVQSQLANHPDELWE G+RDYLTHASSIMEKFSDIVEWLKANAVKGESSPSTGSPT EKK
Sbjct: 72  WVQSQLANHPDELWEGGVRDYLTHASSIMEKFSDIVEWLKANAVKGESSPSTGSPTTEKK 131

Query: 72  TEIEHKNTDVKLFQGQTNFAPISATTSSATSWTSGAFFNHQTPSIFGLQSSVPANGVSVG 131
           TEIEH+NTD+K FQGQT F P SATT+SATSWTSGAFFNHQ PSIFGLQ+SVPANGVSVG
Sbjct: 132 TEIEHQNTDLKPFQGQTGFPPTSATTNSATSWTSGAFFNHQAPSIFGLQNSVPANGVSVG 191

Query: 132 QTAVPTSESVDDENDLEQPSSPSVKKSEEKGVVVVHEVKCKLYVKSTDPADKDAWKDKGT 191
           QTAVPTSES DDENDLEQPSSPSVKKSEEKGVVVVHEVKCKLYVKSTDPADKDAWKDKGT
Sbjct: 192 QTAVPTSESADDENDLEQPSSPSVKKSEEKGVVVVHEVKCKLYVKSTDPADKDAWKDKGT 251

Query: 192 GQLSIKCKEGISKGTKESKPTILIRNDVGRLLLNALIYPGIKTNIQKNSIVAIFHTSSEG 251
           GQLSIKCKEGISKG+KESKPTI+IRNDVGRLLLNALIYPGIKTN QKNSIVAIFHTSSEG
Sbjct: 252 GQLSIKCKEGISKGSKESKPTIVIRNDVGRLLLNALIYPGIKTNTQKNSIVAIFHTSSEG 311

Query: 252 NTNDNSDKDKVVARTYLIRLKTEDDRNKLATAIQECTPAP 292
           +TNDNSDKDKVVARTYLIRLKTEDDRNKLATAIQEC PAP
Sbjct: 312 DTNDNSDKDKVVARTYLIRLKTEDDRNKLATAIQECAPAP 351

[Close]

BLAST of CsaV3_5G003280 vs. ExPASy TrEMBL
Match: A0A1S3AU17 (uncharacterized protein LOC103482703 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103482703 PE=4 SV=1)

HSP 1 Score: 521.2 bits (1341), Expect = 2.9e-144
Identity = 262/280 (93.57%), Postives = 270/280 (96.43%), Query Frame = 0


Query: 12  WVQSQLANHPDELWEDGIRDYLTHASSIMEKFSDIVEWLKANAVKGESSPSTGSPTAEKK 71
           WVQSQLANHPDELWE G+RDYLTHASSIMEKFSDIVEWLKANAVKGESSPSTGSPT EKK
Sbjct: 72  WVQSQLANHPDELWEGGVRDYLTHASSIMEKFSDIVEWLKANAVKGESSPSTGSPTTEKK 131

Query: 72  TEIEHKNTDVKLFQGQTNFAPISATTSSATSWTSGAFFNHQTPSIFGLQSSVPANGVSVG 131
           TEIEH+NTD+K FQGQT F P SATT+SATSWTSGAFFNHQ PSIFGLQ+SVPANGVSVG
Sbjct: 132 TEIEHQNTDLKPFQGQTGFPPTSATTNSATSWTSGAFFNHQAPSIFGLQNSVPANGVSVG 191

Query: 132 QTAVPTSESVDDENDLEQPSSPSVKKSEEKGVVVVHEVKCKLYVKSTDPADKDAWKDKGT 191
           QTAVPTSES DDENDLEQPSSPSVKKSEEKGVVVVHEVKCKLYVKSTDPADKDAWKDKGT
Sbjct: 192 QTAVPTSESADDENDLEQPSSPSVKKSEEKGVVVVHEVKCKLYVKSTDPADKDAWKDKGT 251

Query: 192 GQLSIKCKEGISKGTKESKPTILIRNDVGRLLLNALIYPGIKTNIQKNSIVAIFHTSSEG 251
           GQLSIKCKEGISKG+KESKPTI+IRNDVGRLLLNALIYPGIKTN QKNSIVAIFHTSSEG
Sbjct: 252 GQLSIKCKEGISKGSKESKPTIVIRNDVGRLLLNALIYPGIKTNTQKNSIVAIFHTSSEG 311

Query: 252 NTNDNSDKDKVVARTYLIRLKTEDDRNKLATAIQECTPAP 292
           +TNDNSDKDKVVARTYLIRLKTEDDRNKLATAIQEC PAP
Sbjct: 312 DTNDNSDKDKVVARTYLIRLKTEDDRNKLATAIQECAPAP 351

[Close]

BLAST of CsaV3_5G003280 vs. ExPASy TrEMBL
Match: A0A6J1E2W9 (uncharacterized protein LOC111430301 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111430301 PE=4 SV=1)

HSP 1 Score: 507.3 bits (1305), Expect = 4.3e-140
Identity = 256/291 (87.97%), Postives = 268/291 (92.10%), Query Frame = 0


Query: 1   MCAGRSHLSSIWVQSQLANHPDELWEDGIRDYLTHASSIMEKFSDIVEWLKANAVKGESS 60
           MCAGRS L SIWVQSQL NHPDELWEDGIRDYLTHASSIMEKFSDIVEWLKA AV+GESS
Sbjct: 1   MCAGRSLLGSIWVQSQLTNHPDELWEDGIRDYLTHASSIMEKFSDIVEWLKAKAVEGESS 60

Query: 61  PSTGSPTAEKKTEIEHKNTDVKLFQGQTNFAPISATTSSATSWTSGAFFNHQTPSIFGLQ 120
           P TGS  +EKKTE EHK TDVKLFQGQT+FAP SATTS ATSWTSGA FNHQ PSIFGL+
Sbjct: 61  PPTGSLKSEKKTETEHKKTDVKLFQGQTSFAPASATTSIATSWTSGALFNHQAPSIFGLK 120

Query: 121 SSVPANGVSVGQTAVPTSESVDDENDLEQPSSPSVKKSEEKGVVVVHEVKCKLYVKSTDP 180
           +SVPANGVS+GQTAV  SE+ DDENDLEQPSSPSVKKSEEKGVVVVHEVKCKLYVKSTDP
Sbjct: 121 NSVPANGVSIGQTAVSNSENADDENDLEQPSSPSVKKSEEKGVVVVHEVKCKLYVKSTDP 180

Query: 181 ADKDAWKDKGTGQLSIKCKEGISKGTKESKPTILIRNDVGRLLLNALIYPGIKTNIQKNS 240
            DKDAWKDKGTGQLSIKCKEGISKGTKESKPTI+IRNDVGRLLLNA IYPGIKT+ QKNS
Sbjct: 181 TDKDAWKDKGTGQLSIKCKEGISKGTKESKPTIVIRNDVGRLLLNASIYPGIKTSTQKNS 240

Query: 241 IVAIFHTSSEGNTNDNSDKDKVVARTYLIRLKTEDDRNKLATAIQECTPAP 292
           +VAIFHTSSE +TN+N DKD VVARTYLIRLKTEDDRNKLATAIQEC PAP
Sbjct: 241 LVAIFHTSSESDTNENGDKDTVVARTYLIRLKTEDDRNKLATAIQECAPAP 291

[Close]

BLAST of CsaV3_5G003280 vs. TAIR 10
Match: AT4G11790.1 (Pleckstrin homology (PH) domain superfamily protein )

HSP 1 Score: 250.8 bits (639), Expect = 1.4e-66
Identity = 166/383 (43.34%), Postives = 201/383 (52.48%), Query Frame = 0


Query: 12  WVQSQLANHPDELWEDGIRDYLTHASSIMEKFSDIVEWLKANAVKGESSPSTGSPTAEKK 71
           WVQ QL NHPDELWEDG+ DY+THAS+I+EKF D+V WLK N  KGE+  S  S  AE K
Sbjct: 69  WVQLQLKNHPDELWEDGMNDYITHASNILEKFKDVVSWLKENKGKGENL-SPESRGAENK 128

Query: 72  TEIEHKNTDVKLFQGQTNFAP----------------------ISATTSSATSWTSGAFF 131
              E KNT+VK F     FA                        S+ + + +S  SG   
Sbjct: 129 LVAEVKNTNVKSFSNNIPFASNNQPGIFSNNQSSDFSSSQSGFFSSQSGAFSSSPSGLIS 188

Query: 132 NHQT---------------PSIF---------------------GLQSSVPANGVSVGQ- 191
           N QT               PS+F                     G+ S+      S GQ 
Sbjct: 189 NSQTGSFSSGQFGTTKSSQPSLFSGSQAGAISNSQPGTFSSSHSGITSNSQTGSFSSGQF 248

Query: 192 ------------------------------------TAVPT---------SESVDDENDL 251
                                               +AVP          S+  D  ++ 
Sbjct: 249 GQTKSSQPSLLSGSQAGAISSNQPSFQFSNSQSPFTSAVPPVSIPAKQDHSDDADGGDEQ 308

Query: 252 EQPSSPSVKKSEEKGVVVVHEVKCKLYVKSTDPADKDAWKDKGTGQLSIKCKEGISKGTK 291
            QPSSPSVKK+EEKG+ VVHEVKCKLYVKS+DPADK  WKDKGTG L IKCKEG+ KGTK
Sbjct: 309 SQPSSPSVKKTEEKGITVVHEVKCKLYVKSSDPADK-GWKDKGTGNLYIKCKEGVDKGTK 368

The following BLAST results are available for this feature:

BLAST of CsaV3_5G003280 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647872.1	5.9e-160	100.00	hypothetical protein Csa_000090 [Cucumis sativus]	[more]
XP_004143935.1	4.1e-153	100.00	uncharacterized protein LOC101205107 [Cucumis sativus]	[more]
XP_008437206.1	2.1e-149	93.13	PREDICTED: uncharacterized protein LOC103482703 isoform X2 [Cucumis melo]	[more]
XP_038875849.1	2.2e-146	91.75	uncharacterized protein LOC120068214 isoform X2 [Benincasa hispida]	[more]
XP_008437205.1	5.9e-144	93.57	PREDICTED: uncharacterized protein LOC103482703 isoform X1 [Cucumis melo] >KAA00...	[more]

BLAST of CsaV3_5G003280 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G003280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMP1	2.0e-153	100.00	RanBD1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G155600 PE=4...	[more]
A0A1S3AU01	1.0e-149	93.13	uncharacterized protein LOC103482703 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5A7TMK5	2.9e-144	93.57	RanBD1 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A1S3AU17	2.9e-144	93.57	uncharacterized protein LOC103482703 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1E2W9	4.3e-140	87.97	uncharacterized protein LOC111430301 isoform X3 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of CsaV3_5G003280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G11790.1	1.4e-66	43.34	Pleckstrin homology (PH) domain superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000156	Ran binding domain	SMART	SM00160	ranbd_3	coord: 147..287 e-value: 4.8E-5 score: -0.5
IPR000156	Ran binding domain	PFAM	PF00638	Ran_BP1	coord: 155..288 e-value: 6.7E-8 score: 32.8
IPR000156	Ran binding domain	PROSITE	PS50196	RANBD1	coord: 157..291 score: 10.551318
IPR011993	PH-like domain superfamily	GENE3D	2.30.29.30		coord: 50..290 e-value: 1.6E-24 score: 88.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 136..159
None	No IPR available	PANTHER	PTHR23138	RAN BINDING PROTEIN	coord: 8..290
None	No IPR available	PANTHER	PTHR23138:SF141	NUCLEAR PORE COMPLEX PROTEIN NUP50	coord: 8..290
None	No IPR available	CDD	cd13170	RanBD_NUP50	coord: 159..287 e-value: 5.74457E-28 score: 102.296
None	No IPR available	SUPERFAMILY	50729	PH domain-like	coord: 157..289

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G003280.1	CsaV3_5G003280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046907	intracellular transport