CsaV3_5G002870 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G002870
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	YqgFc domain-containing protein
Location	chr5: 1802823 .. 1806124 (+)
RNA-Seq Expression	CsaV3_5G002870
Synteny	CsaV3_5G002870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATATTTGCCATATAGTTTAGTGAAGACTGTGGACAGTTTTTTCTATATTTATAATGGGTTAAAAACTCAATTATTTTAAATCTAAATTTATTCGTAAGTATCTTACCAGATTTGGGCCTAGGTGACATTTGGGGTTGATTATGGGCCTAATGAGTTCAGCGGTTTTGTAAGGGACCTATCATTGCCAAACTCAAATAAAAAATTGATTTATTCGAGCAATTAATCGCATCGAGGGCTCGGAAGGATTCGGGCTTGATGGAGTCTTGACTCACATTCGATTGCGAATGAGTCTGAATGTGCATAACCGATTGTACGTTTTGATCCTCAAAGGCGCGAAGCTGATAATGGTTTGTATGAATTAAATAGCAATACGAGATGAAGTATGTGAGGCCGTTGATGCTTTTTCGTGATTTGACGAAGAGAGATGCACTTGAACATGGCCGTTTGCTTGGTTTAGATGTTGGTGACAAGTATGTTGGTTTAGCCGTGTCTGACCCAGATAATAAAATCGCTTGCCCTCTCAGGTATTTTGTTCATGATGGGATTTTGTGTGAGGGATTGGGAGTAATGGGGCTGAAGCTGAAGTTAACCAAACTTGACCAGTGTTAGTTGTTGTCGATTGTTGCAGTGTTTTGTTACGGAAGAAGACCACAATGGATTTGATGGCTCAGGATTTTCAGAAAATGGTGAGGCCTTTTACTTTGGTTCTTTTTACTTTGTCGTTCCTATTAAGATTTGTGGAATGTAATTTGATGCAATGCTGAGTGATAACAATGATTGAAGGTTGGTGCCACAAAATCTTGTCGGGAGAACTTTAATTTACTTGAGATATTATTTTCTCTTTCTTTTATCTTTTTCCGTCGTGTGAAGATTTGTTCAAGGTTATTTGATGCTATGCTGAATGATAAACGATGACTGGTTGTGCCACAAAAATCTATAGGGAGTATTTTTTTTAAAAAATCTATTTCCTAGGAAGATTTGTAGAACGATATTTGATGAAATGCTGAATGATAGACAATGATTGAAGGTTGAACAAAATTTTGCAGGGAGAACTTTAATTTTCTTGAGATTTTCTTCTCTCTTTATATCTATCTATCTATCTCTACACACACGCAATCTTTTTCCTTCCTATGAAGATTGGTAGAATGTTGTTTTATGCAATCCTAAATGATAAACAATGATTGAAGGGTGGTGCACACAAATTTTCAGGGAGAATTTTTTCGGTGAGTACCACTTTAGGTGTTGAAATGGGATTTATTAATGATGACACCAGGATTACTTTGTAGTTGCATAGCTTTAACTTTACCTTTTTCCTTACCTCATTTCCTGAGATGTGTTGTTGCGCAACGTATTTGCCTTTAAACTTCAATATATGATAGTGAATTGTTAATGTTGTTCTTTCTTGCAACATTCAGTCATCTCCATCCTGTTTGTATTTACAGTTGTTTCTGATTTGTGTATTCAGATCTCTGAATTTTCCCTGGCGGGGTTCATTGTTGGGTACCCTTTCGATAGACTACGGAACAACCCGGACGTGCGTTCTTTATCTCTTCAGAGACATCATTATTGACTCTTATCTGTACTTGACCTTATATTGTTCTGAGTACAGGCTATGCAAGTGAAGATCTTCATTGATGACCTTTGTAAAACTGGAAAACTTGAAGGCGTAAAGTATACTTTTTGGGATGAGTGCTTTACATCAAAGGTTATTGCATCTAGTTTAGCAAGCCCTTCCGGTTCGTCTTGTGACATGTGGCATGCCTTTCAATGTCTCGGTCCATGTCTCCGTTGAATTCACAAACTTGGTCAAATGAGTGTGATTATGTTTTGAATTGTCTTTCACCTGATAAAATTTTCTTTTACGTGGTGCTGACTTATGCATAGGCTACTGCTACATTGAATTTCATCAACAATGAATTTTATATTTGTGATTTACTGATTTCTTTTATCTATACACAGAATGTGGAACTACTGATAAAGCCATTAAACCTGCTCCCCGCTGTGTCAAAGACAATAATTGACAAATTTGCTGCTGTTGGAATACTTCAGGTAATTTAGAATTCTCTCTCTCTTTTGCTTAAACTTTCATCTTGATAAGGTTGGCAGCTGAAATGATTATCCAATTTTCTCAATGTAAGAATAATATCTTAAAATATCAATAGAAGCTTCAGTGTATTAACAATAAGGTGTGTATGTCAGGGTTACTTGGATTATTTTAACAGAAGACCGGAATTGGGCGAGACGTAGAGTAAGGTGGACTATATGGGATCAGGTACTTGTTTGTCAACGGAGTTGCTTTCTTTGCAAATTGAAATTTCAAAATTTTGAATTAAAAAATGTCCTTTTGTTCATAAATGTTTACCGTGACTAGAAAATTGGGTTTTCAAATTTAGTTTCTAATGTAAATTTTAGACCATTTAGAAACTAATTTCATATTTCATGGACTAGTCAGAAACTGCATTTGTACTGGATCCAACATGTCATTTTTGGATTTCTAAGGACTAAATAGAACTAAAAGTATTAGTTTTGAAATTCATATACCAAATAAAAATTAAGGGGTTGTTTGGACCCTCAACTTTGAGTGGGTGGAGTGGTGTATTATAATACACTCCATGTTTGGGTCTCGAATAACAATAGAGTGGTTCTTTTTAACTAACCTTAAAATAATTTACACTCTAAATATAAAGTATTATAAAGTATCGACTAATAACTAACTCAACGTTTCAAATGTTTTAAGTTTAAGTATCACCCATGAAGGTTTTATTTTATTACCTAGGTCGGTGATATTTGTGATTTCTAAAGGACAGTTTGTGTTAAACTTTGCCTTCAAATTTTAGGCTTCCTTGTATTGTTCCCACCCTTTGATAATAATTTGATACATTATACATTGATCATTATATGCAGACATTTGATTCTCCCTTCTTAGTAGGGGATGGAACAATTTATTTGAAGCTCTCAGTTCTTAAGTGGCGATGAATATGCATTGACAAATGACATCTTAAAAGGGTGAATCATCTGCTCTCAACCGACTAATCAGCTAATGGGGTTCGTTCTTCTTTATGTAGACTTTTTCTTGTGTGAATTCCATCAAGTGCTTGTTTCCATTTTTGTTTATTACTAAATTATTACTAATGACAACAACTGTTCAATATAGTTTGTCTATATTACAAATCAACCTCTTTTATTTTAAAAATGGCTTCGATTGTTTTTATGCTCGTGGGTGTGCTTATTCAATGATACGTTGGTG

mRNA sequence

ATGAAGTATGTGAGGCCGTTGATGCTTTTTCGTGATTTGACGAAGAGAGATGCACTTGAACATGGCCGTTTGCTTGGTTTAGATGTTGGTGACAAGTATGTTGGTTTAGCCGTGTCTGACCCAGATAATAAAATCGCTTGCCCTCTCAGTGTTTTGTTACGGAAGAAGACCACAATGGATTTGATGGCTCAGGATTTTCAGAAAATGATCTCTGAATTTTCCCTGGCGGGGTTCATTGTTGGGTACCCTTTCGATAGACTACGGAACAACCCGGACGCTATGCAAGTGAAGATCTTCATTGATGACCTTTGTAAAACTGGAAAACTTGAAGGCGTAAAGTATACTTTTTGGGATGAGTGCTTTACATCAAAGAATGTGGAACTACTGATAAAGCCATTAAACCTGCTCCCCGCTGTGTCAAAGACAATAATTGACAAATTTGCTGCTGTTGGAATACTTCAGGGTTACTTGGATTATTTTAACAGAAGACCGGAATTGGGCGAGACGTAG

Coding sequence (CDS)

ATGAAGTATGTGAGGCCGTTGATGCTTTTTCGTGATTTGACGAAGAGAGATGCACTTGAACATGGCCGTTTGCTTGGTTTAGATGTTGGTGACAAGTATGTTGGTTTAGCCGTGTCTGACCCAGATAATAAAATCGCTTGCCCTCTCAGTGTTTTGTTACGGAAGAAGACCACAATGGATTTGATGGCTCAGGATTTTCAGAAAATGATCTCTGAATTTTCCCTGGCGGGGTTCATTGTTGGGTACCCTTTCGATAGACTACGGAACAACCCGGACGCTATGCAAGTGAAGATCTTCATTGATGACCTTTGTAAAACTGGAAAACTTGAAGGCGTAAAGTATACTTTTTGGGATGAGTGCTTTACATCAAAGAATGTGGAACTACTGATAAAGCCATTAAACCTGCTCCCCGCTGTGTCAAAGACAATAATTGACAAATTTGCTGCTGTTGGAATACTTCAGGGTTACTTGGATTATTTTAACAGAAGACCGGAATTGGGCGAGACGTAG

Protein sequence

MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET*

Homology

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BLAST of CsaV3_5G002870 vs. NCBI nr
Match: XP_004143911.1 (uncharacterized protein LOC101219574 [Cucumis sativus] >XP_011654757.1 uncharacterized protein LOC101219574 [Cucumis sativus] >KGN50104.1 hypothetical protein Csa_000396 [Cucumis sativus])

HSP 1 Score: 349.0 bits (894), Expect = 2.3e-92
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 1   MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD 60
           MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD
Sbjct: 1   MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD 60

Query: 61  LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC 120
           LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC
Sbjct: 61  LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC 120

Query: 121 FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET 170
           FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET
Sbjct: 121 FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET 169

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BLAST of CsaV3_5G002870 vs. NCBI nr
Match: XP_008437257.1 (PREDICTED: putative pre-16S rRNA nuclease isoform X1 [Cucumis melo])

HSP 1 Score: 307.4 bits (786), Expect = 7.8e-80
Identity = 148/169 (87.57%), Postives = 158/169 (93.49%), Query Frame = 0


Query: 1   MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD 60
           MKYV+P +LFRDL KRD L+H RLLGLDVGDKYVGLAVSDPDNKIA PLSVLLRKK TMD
Sbjct: 1   MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMD 60

Query: 61  LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC 120
           LMA+DFQK+ISEFSLAGFIVGYPFDRLR N +A+QVKIFIDDLCKTGKLEGVKYTFWDE 
Sbjct: 61  LMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFIDDLCKTGKLEGVKYTFWDEG 120

Query: 121 FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET 170
           FTSKNVE +IKPLNLLPAVSKT++DKFAAVGILQGYLDYFNRRPEL ET
Sbjct: 121 FTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNRRPELSET 169

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BLAST of CsaV3_5G002870 vs. NCBI nr
Match: XP_038875331.1 (putative pre-16S rRNA nuclease isoform X1 [Benincasa hispida] >XP_038875332.1 putative pre-16S rRNA nuclease isoform X1 [Benincasa hispida])

HSP 1 Score: 293.5 bits (750), Expect = 1.2e-75
Identity = 141/168 (83.93%), Postives = 154/168 (91.67%), Query Frame = 0


Query: 1   MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD 60
           MKYV+PL LFRDL KR+ LEHGRLLGLDVGDKYVGLAVSDPDNKIA PLSVL+RKKT M 
Sbjct: 1   MKYVKPLNLFRDLLKRNGLEHGRLLGLDVGDKYVGLAVSDPDNKIASPLSVLIRKKTKMH 60

Query: 61  LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC 120
           LMA+DF+++IS+FSLAGFIVGYP  RLR NPDA+QVKIFID+LCKTGKLE VKYTFWDEC
Sbjct: 61  LMAEDFERLISKFSLAGFIVGYPSLRLRRNPDAVQVKIFIDELCKTGKLEDVKYTFWDEC 120

Query: 121 FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGE 169
           FTSKNVELLIKPL L P +SKT++DKFAAVGILQGYLDYFNRRPEL E
Sbjct: 121 FTSKNVELLIKPLKLPPILSKTVMDKFAAVGILQGYLDYFNRRPELEE 168

[Close]

BLAST of CsaV3_5G002870 vs. NCBI nr
Match: XP_022957830.1 (uncharacterized protein LOC111459253 [Cucurbita moschata] >XP_022957831.1 uncharacterized protein LOC111459253 [Cucurbita moschata] >XP_022957832.1 uncharacterized protein LOC111459253 [Cucurbita moschata])

HSP 1 Score: 289.3 bits (739), Expect = 2.2e-74
Identity = 142/168 (84.52%), Postives = 149/168 (88.69%), Query Frame = 0


Query: 1   MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD 60
           MKYVRPL LFRDL K +ALE GR LGLDVGDKYVGLAVSDPDNKIA PLSVL RKKT M 
Sbjct: 1   MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH 60

Query: 61  LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC 120
           LMA DFQ++ISE SL+GFIVGYPFD  R N DA+QVKIFIDDLCKTGKLEGVKYTFWDEC
Sbjct: 61  LMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDEC 120

Query: 121 FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGE 169
           FTSKNVELLIKPL L P +SKTIIDKFAAVGILQGYLD+FNRRPEL E
Sbjct: 121 FTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPELDE 168

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BLAST of CsaV3_5G002870 vs. NCBI nr
Match: XP_022995255.1 (uncharacterized protein LOC111490857 [Cucurbita maxima] >XP_022995256.1 uncharacterized protein LOC111490857 [Cucurbita maxima])

HSP 1 Score: 288.9 bits (738), Expect = 2.9e-74
Identity = 142/168 (84.52%), Postives = 149/168 (88.69%), Query Frame = 0


Query: 1   MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD 60
           MKYVRPL LFRDL K +ALE GR LGLDVGDKYVGLAVSDPDNKIA PLSVL RKKT M 
Sbjct: 1   MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH 60

Query: 61  LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC 120
           LMA DFQ++ISE SL+GFIVGYPFD  R N DA+QVKIFIDDLCKTGKLEGVKYTFWDEC
Sbjct: 61  LMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDEC 120

Query: 121 FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGE 169
           FTSKNVELLIKPL L P +SKTIIDKFAAVGILQGYLD+FNRRPEL E
Sbjct: 121 FTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPELEE 168

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BLAST of CsaV3_5G002870 vs. ExPASy Swiss-Prot
Match: A4XKC6 (Putative pre-16S rRNA nuclease OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 / Tp8T 6331) OX=351627 GN=Csac_1776 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.4e-15
Identity = 51/145 (35.17%), Postives = 79/145 (54.48%), Query Frame = 0


Query: 23  RLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQD----FQKMISEFSLAGF 82
           R+L LD+G + +G+A+SDP    A P  VL       DL  +D      K+ +E  +   
Sbjct: 2   RILCLDIGSRRIGVAISDPLKIAAQPFCVL-------DLQKEDLYSCLDKIFNEHQIEKI 61

Query: 83  IVGYPFDRLRNNPDAMQVKI-FIDDLC-KTGKLEGVKYTFWDECFTSKNVELLIKPLNLL 142
           ++GYP  +   +PD    K+  ID++C +  +   V    WDE F++K VE +++  N+ 
Sbjct: 62  VIGYPVSKF--HPDKATEKLQKIDEICSELERRYKVGIIKWDERFSTKAVERILREENVS 121

Query: 143 PAVSKTIIDKFAAVGILQGYLDYFN 162
               K ++DK AAV ILQGYLD+ N
Sbjct: 122 WQKRKKVVDKLAAVYILQGYLDFIN 137

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BLAST of CsaV3_5G002870 vs. ExPASy Swiss-Prot
Match: B9MRK7 (Putative pre-16S rRNA nuclease OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320) OX=521460 GN=Athe_1211 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 7.0e-15
Identity = 54/142 (38.03%), Postives = 82/142 (57.75%), Query Frame = 0


Query: 23  RLLGLDVGDKYVGLAVSDPDNKIACP-LSVLLRKKTTMDLMAQDFQKMISEFSLAGFIVG 82
           R+L LD+G+  VG+A+SDP    A P +++ LR K     + ++  K+   +++   ++G
Sbjct: 2   RILCLDIGNSRVGVAISDPLKITAQPVMTIELRNKD----LFEELDKIFQGYNIEKVVIG 61

Query: 83  YPFDRLRNNPDAMQVKI-FIDDLC-KTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAV 142
           YP  +L  +PD    K+  ID++  K G    V+   WDE F++K VE +I    L    
Sbjct: 62  YPLSKL--HPDQKDEKLKKIDEISEKIGSRYNVEIVKWDERFSTKAVERVIDE-ELNWKR 121

Query: 143 SKTIIDKFAAVGILQGYLDYFN 162
            K IIDK AAV ILQGYLD++N
Sbjct: 122 KKKIIDKVAAVYILQGYLDFYN 136

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BLAST of CsaV3_5G002870 vs. ExPASy Swiss-Prot
Match: Q1QL26 (Putative pre-16S rRNA nuclease OS=Nitrobacter hamburgensis (strain DSM 10229 / NCIMB 13809 / X14) OX=323097 GN=Nham_2279 PE=3 SV=2)

HSP 1 Score: 78.6 bits (192), Expect = 7.7e-14
Identity = 49/140 (35.00%), Postives = 74/140 (52.86%), Query Frame = 0


Query: 20  EHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQDFQKMISEFSLAGFI 79
           E G L+GLD+G K +G+AVSDPD ++A  +  L RK  T D  A     +  E + AGF+
Sbjct: 17  ERGALVGLDLGTKTIGVAVSDPDRRLATGVETLQRKTFTAD--AARLLAIAGERNAAGFV 76

Query: 80  VGYPFDR-LRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPA 139
           +G P +      P A   + F  +L    +L  +    WDE  ++  VE  +  +++  A
Sbjct: 77  LGLPINMDGSEGPRAQSTRAFARNL---ARLTDLAIGLWDERLSTVAVERELIGMDMSRA 136

Query: 140 VSKTIIDKFAAVGILQGYLD 159
               +ID+ AA+ ILQG LD
Sbjct: 137 KRAKVIDEHAAIFILQGALD 151

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BLAST of CsaV3_5G002870 vs. ExPASy Swiss-Prot
Match: Q3AEN4 (Putative pre-16S rRNA nuclease OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901) OX=246194 GN=CHY_0542 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.3e-13
Identity = 50/138 (36.23%), Postives = 74/138 (53.62%), Query Frame = 0


Query: 23  RLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQDFQKMISEFSLAGFIVGY 82
           ++LGLDVGDK +G+A+SD     A  L+V+ R     DL  ++ +K+I    +   ++GY
Sbjct: 2   KVLGLDVGDKKIGVALSDELGLTAQGLTVIYRTSLKKDL--EEIKKIIDLHHVTEVVIGY 61

Query: 83  PFDRLRN-NPDAMQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVSK 142
           P +      P A  VK F  +L    K  G+K  FWDE  ++   E L+   ++     K
Sbjct: 62  PRNMNGTAGPRAELVKRFARELY---KFTGIKPVFWDERLSTVEAEKLLISGDISRRKRK 121

Query: 143 TIIDKFAAVGILQGYLDY 160
            +IDK AA  IL GYL+Y
Sbjct: 122 KVIDKLAATLILSGYLNY 134

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BLAST of CsaV3_5G002870 vs. ExPASy Swiss-Prot
Match: Q52673 (Putative pre-16S rRNA nuclease OS=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) OX=272942 GN=yqgF PE=3 SV=2)

HSP 1 Score: 77.4 bits (189), Expect = 1.7e-13
Identity = 50/138 (36.23%), Postives = 72/138 (52.17%), Query Frame = 0


Query: 22  GRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMDLMAQDFQKMISEFSLAGFIVG 81
           G L GLD+G K +G+AVSD    IA PL  + R+K ++DL   D  K ++E  +AGF++G
Sbjct: 17  GALAGLDLGTKTIGVAVSDTLRGIATPLRTIRREKFSLDL--ADLMKTVAERQIAGFVLG 76

Query: 82  YPFDR-LRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDECFTSKNVELLIKPLNLLPAVS 141
            P +      P A   + F  +L    KL  +  TFWDE  ++   E  +   +L     
Sbjct: 77  LPVNMDGSEGPRAQSTRAFARNL---EKLTPLPITFWDERLSTVAAERAMLEADLSRKRR 136

Query: 142 KTIIDKFAAVGILQGYLD 159
             ++D  AA  ILQG LD
Sbjct: 137 AELVDHVAAGFILQGALD 149

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BLAST of CsaV3_5G002870 vs. ExPASy TrEMBL
Match: A0A0A0KMK7 (YqgFc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G153680 PE=3 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 1.1e-92
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0


Query: 1   MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD 60
           MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD
Sbjct: 1   MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD 60

Query: 61  LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC 120
           LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC
Sbjct: 61  LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC 120

Query: 121 FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET 170
           FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET
Sbjct: 121 FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET 169

[Close]

BLAST of CsaV3_5G002870 vs. ExPASy TrEMBL
Match: A0A1S3ATQ4 (putative pre-16S rRNA nuclease isoform X1 OS=Cucumis melo OX=3656 GN=LOC103482742 PE=3 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 3.8e-80
Identity = 148/169 (87.57%), Postives = 158/169 (93.49%), Query Frame = 0


Query: 1   MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD 60
           MKYV+P +LFRDL KRD L+H RLLGLDVGDKYVGLAVSDPDNKIA PLSVLLRKK TMD
Sbjct: 1   MKYVKPSILFRDLLKRDELKHSRLLGLDVGDKYVGLAVSDPDNKIASPLSVLLRKKNTMD 60

Query: 61  LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC 120
           LMA+DFQK+ISEFSLAGFIVGYPFDRLR N +A+QVKIFIDDLCKTGKLEGVKYTFWDE 
Sbjct: 61  LMAEDFQKLISEFSLAGFIVGYPFDRLRKNTEAIQVKIFIDDLCKTGKLEGVKYTFWDEG 120

Query: 121 FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGET 170
           FTSKNVE +IKPLNLLPAVSKT++DKFAAVGILQGYLDYFNRRPEL ET
Sbjct: 121 FTSKNVEQMIKPLNLLPAVSKTMLDKFAAVGILQGYLDYFNRRPELSET 169

[Close]

BLAST of CsaV3_5G002870 vs. ExPASy TrEMBL
Match: A0A6J1H0B7 (uncharacterized protein LOC111459253 OS=Cucurbita moschata OX=3662 GN=LOC111459253 PE=3 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 1.1e-74
Identity = 142/168 (84.52%), Postives = 149/168 (88.69%), Query Frame = 0


Query: 1   MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD 60
           MKYVRPL LFRDL K +ALE GR LGLDVGDKYVGLAVSDPDNKIA PLSVL RKKT M 
Sbjct: 1   MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH 60

Query: 61  LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC 120
           LMA DFQ++ISE SL+GFIVGYPFD  R N DA+QVKIFIDDLCKTGKLEGVKYTFWDEC
Sbjct: 61  LMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDEC 120

Query: 121 FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGE 169
           FTSKNVELLIKPL L P +SKTIIDKFAAVGILQGYLD+FNRRPEL E
Sbjct: 121 FTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPELDE 168

[Close]

BLAST of CsaV3_5G002870 vs. ExPASy TrEMBL
Match: A0A6J1K3L4 (uncharacterized protein LOC111490857 OS=Cucurbita maxima OX=3661 GN=LOC111490857 PE=3 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.4e-74
Identity = 142/168 (84.52%), Postives = 149/168 (88.69%), Query Frame = 0


Query: 1   MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD 60
           MKYVRPL LFRDL K +ALE GR LGLDVGDKYVGLAVSDPDNKIA PLSVL RKKT M 
Sbjct: 1   MKYVRPLNLFRDLLKGNALERGRFLGLDVGDKYVGLAVSDPDNKIASPLSVLFRKKTNMH 60

Query: 61  LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC 120
           LMA DFQ++ISE SL+GFIVGYPFD  R N DA+QVKIFIDDLCKTGKLEGVKYTFWDEC
Sbjct: 61  LMALDFQRLISELSLSGFIVGYPFDGQRRNADAVQVKIFIDDLCKTGKLEGVKYTFWDEC 120

Query: 121 FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPELGE 169
           FTSKNVELLIKPL L P +SKTIIDKFAAVGILQGYLD+FNRRPEL E
Sbjct: 121 FTSKNVELLIKPLKLPPILSKTIIDKFAAVGILQGYLDHFNRRPELEE 168

[Close]

BLAST of CsaV3_5G002870 vs. ExPASy TrEMBL
Match: A0A6J1E3H7 (uncharacterized protein LOC111026145 OS=Momordica charantia OX=3673 GN=LOC111026145 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.7e-72
Identity = 137/166 (82.53%), Postives = 146/166 (87.95%), Query Frame = 0


Query: 1   MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD 60
           MKYV+PL +FRDL  R+ LE GR LGLDVGDKYVGLAVSDPDN IA PLSVLLRKKT M 
Sbjct: 1   MKYVKPLNMFRDLLTRNPLERGRFLGLDVGDKYVGLAVSDPDNLIASPLSVLLRKKTKMH 60

Query: 61  LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC 120
           LMA+D Q++ISE SLAGFIVGYPFDR R N DA+QVKIFIDDLCKTG LEGVKYTFWDEC
Sbjct: 61  LMARDLQRLISELSLAGFIVGYPFDRQRRNADAVQVKIFIDDLCKTGTLEGVKYTFWDEC 120

Query: 121 FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNRRPEL 167
           FTSKNVELLIKPL L P +SKTI+DKFAAVGILQGYLDY NRRPEL
Sbjct: 121 FTSKNVELLIKPLELPPVLSKTIVDKFAAVGILQGYLDYHNRRPEL 166

[Close]

BLAST of CsaV3_5G002870 vs. TAIR 10
Match: AT3G52905.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 201.8 bits (512), Expect = 4.3e-52
Identity = 97/162 (59.88%), Postives = 120/162 (74.07%), Query Frame = 0


Query: 1   MKYVRPLMLFRDLTKRDALEHGRLLGLDVGDKYVGLAVSDPDNKIACPLSVLLRKKTTMD 60
           MKYV+PL L  +  K      GR LGLDVGDKYVGLA+SDP N +A PLSVLLRKK+ +D
Sbjct: 1   MKYVKPLSLLGNALKTKVSVPGRFLGLDVGDKYVGLAISDPSNMVASPLSVLLRKKSNID 60

Query: 61  LMAQDFQKMISEFSLAGFIVGYPFDRLRNNPDAMQVKIFIDDLCKTGKLEGVKYTFWDEC 120
           LMA DFQ ++  FS++G +VGYPF +L N  D + V +FI++L KT KL+ VKYT+WDE 
Sbjct: 61  LMATDFQNLVKAFSVSGLVVGYPFGKLNNVEDVVTVNLFIEELRKTEKLKDVKYTYWDER 120

Query: 121 FTSKNVELLIKPLNLLPAVSKTIIDKFAAVGILQGYLDYFNR 163
            +SK VEL++KPLNL P   KT++DK AAV ILQ YLDY NR
Sbjct: 121 LSSKTVELMLKPLNLHPVQEKTMLDKLAAVVILQEYLDYANR 162

The following BLAST results are available for this feature:

BLAST of CsaV3_5G002870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143911.1	2.3e-92	100.00	uncharacterized protein LOC101219574 [Cucumis sativus] >XP_011654757.1 uncharact...	[more]
XP_008437257.1	7.8e-80	87.57	PREDICTED: putative pre-16S rRNA nuclease isoform X1 [Cucumis melo]	[more]
XP_038875331.1	1.2e-75	83.93	putative pre-16S rRNA nuclease isoform X1 [Benincasa hispida] >XP_038875332.1 pu...	[more]
XP_022957830.1	2.2e-74	84.52	uncharacterized protein LOC111459253 [Cucurbita moschata] >XP_022957831.1 unchar...	[more]
XP_022995255.1	2.9e-74	84.52	uncharacterized protein LOC111490857 [Cucurbita maxima] >XP_022995256.1 uncharac...	[more]

BLAST of CsaV3_5G002870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4XKC6	5.4e-15	35.17	Putative pre-16S rRNA nuclease OS=Caldicellulosiruptor saccharolyticus (strain A...	[more]
B9MRK7	7.0e-15	38.03	Putative pre-16S rRNA nuclease OS=Caldicellulosiruptor bescii (strain ATCC BAA-1...	[more]
Q1QL26	7.7e-14	35.00	Putative pre-16S rRNA nuclease OS=Nitrobacter hamburgensis (strain DSM 10229 / N...	[more]
Q3AEN4	1.3e-13	36.23	Putative pre-16S rRNA nuclease OS=Carboxydothermus hydrogenoformans (strain ATCC...	[more]
Q52673	1.7e-13	36.23	Putative pre-16S rRNA nuclease OS=Rhodobacter capsulatus (strain ATCC BAA-309 / ...	[more]

BLAST of CsaV3_5G002870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMK7	1.1e-92	100.00	YqgFc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G153680 PE=3 ...	[more]
A0A1S3ATQ4	3.8e-80	87.57	putative pre-16S rRNA nuclease isoform X1 OS=Cucumis melo OX=3656 GN=LOC10348274...	[more]
A0A6J1H0B7	1.1e-74	84.52	uncharacterized protein LOC111459253 OS=Cucurbita moschata OX=3662 GN=LOC1114592...	[more]
A0A6J1K3L4	1.4e-74	84.52	uncharacterized protein LOC111490857 OS=Cucurbita maxima OX=3661 GN=LOC111490857...	[more]
A0A6J1E3H7	1.7e-72	82.53	uncharacterized protein LOC111026145 OS=Momordica charantia OX=3673 GN=LOC111026...	[more]

BLAST of CsaV3_5G002870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52905.1	4.3e-52	59.88	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006641	YqgF/RNase H-like domain	SMART	SM00732	rnase_8s	coord: 22..126 e-value: 6.8E-17 score: 72.1
IPR005227	Putative pre-16S rRNA nuclease	TIGRFAM	TIGR00250	TIGR00250	coord: 25..158 e-value: 1.7E-13 score: 48.7
IPR005227	Putative pre-16S rRNA nuclease	PFAM	PF03652	RuvX	coord: 23..158 e-value: 1.1E-25 score: 90.7
IPR005227	Putative pre-16S rRNA nuclease	PANTHER	PTHR33317	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN	coord: 1..165
IPR005227	Putative pre-16S rRNA nuclease	HAMAP	MF_00651	Nuclease_YqgF	coord: 22..161 score: 16.81423
IPR005227	Putative pre-16S rRNA nuclease	CDD	cd16964	YqgF	coord: 24..158 e-value: 2.48811E-29 score: 102.951
IPR037027	YqgF/RNase H-like domain superfamily	GENE3D	3.30.420.140		coord: 21..164 e-value: 1.4E-28 score: 101.6
None	No IPR available	PANTHER	PTHR33317:SF1	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN	coord: 1..165
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 22..161

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G002870.1	CsaV3_5G002870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006139	nucleobase-containing compound metabolic process
biological_process	GO:0006364	rRNA processing