CsaV3_5G002530 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G002530
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr5: 1534363 .. 1536136 (+)
RNA-Seq Expression	CsaV3_5G002530
Synteny	CsaV3_5G002530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGATAAAGCACTTAATGTGAACCATGAAGGTTCACGAAAGTTCCACTCCCCAATCCAACTCCAAAACTCTCAGCTTCGATATAAGCCAATCCAGCTCAACACCGGAATAACGTCGATTGCACAATATCGGAGTTCGGACACTCTCATCTTGCTCTTCTCCTACCTTCTAAAATTCATATCTCATGTAACTCTTCATATTTTTCCTCCCTCCCATCAATCTTTCTCAATCGGTGTTTAAATTTTCGTCTCTTTTCCTTAACATTACTTTTCTTGAAATTCTTGATCCTAAGTTTTGTTATTTTCATTTTATGATCAGATTTAATACACAGTCTCAGCTTCTGTTACATTCAACTCATTGGTCTCTGCGTTTGGGGAAGCTTAACTGCTCAAAGTTGTATAATACTATGCGTGGTGCAGCTGCCTTCTTGACTGTAAAGAACAAATCTAAACTGATCCATCCTCCGAAAGGATCATGGGGTATTGACCCTTCTCTTTGATTGATTAATCTTTCCATTTCTTTTTGGTAAATTACAAGATTGGCTCCTAAGTTTTCAGAGTTTTGTTGATTTTGTCTTTGTACCTTACAAAATTTCTAATAAGTTCTGAACTTGTAAAGTTAACTCCCTGTGTTTTAAAATGTTTTTTTAATTGATCTCGGAATCTCAATTTTGTATCTAATAGGTTAGGTTGTGATTTCGAAACACTTGCATGACACACATTTTTAAGGGTCTCTTAGTAGGTTGATTTTAGGTGTAAGCATTGAACAATAAAATTAGTGAAAATAAGTTTAGTGATTTGTTGAGTGCGAAAGTGAAAGTTAAAAAACTTATCAAGGTATATTAGTTAAACTTATAATTCAAGCATACAAATTTTGCTATCTATTTGAAGCTTTTTTAGTTTCTAAAGTACAAAGATTATGTTCACAAAAGTTAATGGACCAAACATATAATATAATTTTGCTATCTGTTTGGTTCGTTGCTTGAAACAATTGTTGGACTGCGATTTGATTAGGTAGTCTGACTTCCACAGTACAAAGGCAAGGAATGAAGAATGATTCTGAGGGAGAGTCTGTGGTTACAAAAGAGAAAGCTGACCCAATTGCAGCGTTCAGTAGGCCTCCACCACTCCCCCCCCTTCTTGGTCCATTGGCTGTTTTTTCATTGTTAGAAACATATTTGAGTCCTGATGGAAACGATGACTAGAACGGGATGTTTTGTAATACCTTTTGGCTGAGATCAAGTGTAGTATCTGTTCTAGAAGGGGATGTCTTGTATGTTCATTAACTGTACCATTTCCACGACCTCGCTATTACCATGTATGATATTTTCCTTGTTTGTGAAATAAAGTAAAATGAAGAGTACGTAAAAAAAAAGTGGAGACCCAAACGTATTAAAATCTTTAGAAAGGGCTTGCAAATGTTCCAGAGAAACTTGAAGAGAATTATACAGATCTTTGGCATCCACTTTACCCAACGTTGTTGAGAAACTTTTATCAGCCCTACAGGAGTTTATGTATTTTTAATGTTAAATAAGGAGCTTTTTTCATGAAGATCAATGGCATATGGTATTAATTTTGACTTACATTCATGGATTGCTGGATACTTAGTACGCAATAAAGTCACGAGCTTCATTATAGCCTGATATTAGTTATAGACGAAGCCCCATCAGATCAAAAAATTGTATATATTTTTAATACACACAATTTACTTTGATTTCAATTGAATTGAATTAACATTGAATGATTTTACTCATATCTGAATGTTGAGTGATCGAAG

mRNA sequence

ATGCGTGGTGCAGCTGCCTTCTTGACTGTAAAGAACAAATCTAAACTGATCCATCCTCCGAAAGGATCATGGGTACAAAGGCAAGGAATGAAGAATGATTCTGAGGGAGAGTCTGTGGTTACAAAAGAGAAAGCTGACCCAATTGCAGCGTTCAGTAGGCCTCCACCACTCCCCCCCCTTCTTGGTCCATTGGCTGTTTTTTCATTGTTAGAAACATATTTGAGTCCTGATGGAAACGATGACTAG

Coding sequence (CDS)

ATGCGTGGTGCAGCTGCCTTCTTGACTGTAAAGAACAAATCTAAACTGATCCATCCTCCGAAAGGATCATGGGTACAAAGGCAAGGAATGAAGAATGATTCTGAGGGAGAGTCTGTGGTTACAAAAGAGAAAGCTGACCCAATTGCAGCGTTCAGTAGGCCTCCACCACTCCCCCCCCTTCTTGGTCCATTGGCTGTTTTTTCATTGTTAGAAACATATTTGAGTCCTGATGGAAACGATGACTAG

Protein sequence

MRGAAAFLTVKNKSKLIHPPKGSWVQRQGMKNDSEGESVVTKEKADPIAAFSRPPPLPPLLGPLAVFSLLETYLSPDGNDD*

Homology

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BLAST of CsaV3_5G002530 vs. NCBI nr
Match: KAE8647849.1 (hypothetical protein Csa_000256 [Cucumis sativus])

HSP 1 Score: 167.5 bits (423), Expect = 4.7e-38
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MRGAAAFLTVKNKSKLIHPPKGSWVQRQGMKNDSEGESVVTKEKADPIAAFSRPPPLPPL 60
          MRGAAAFLTVKNKSKLIHPPKGSWVQRQGMKNDSEGESVVTKEKADPIAAFSRPPPLPPL
Sbjct: 1  MRGAAAFLTVKNKSKLIHPPKGSWVQRQGMKNDSEGESVVTKEKADPIAAFSRPPPLPPL 60

Query: 61 LGPLAVFSLLETYLSPDGNDD 82
          LGPLAVFSLLETYLSPDGNDD
Sbjct: 61 LGPLAVFSLLETYLSPDGNDD 81

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BLAST of CsaV3_5G002530 vs. NCBI nr
Match: KAA0042731.1 (hypothetical protein E6C27_scaffold44G002300 [Cucumis melo var. makuwa])

HSP 1 Score: 150.2 bits (378), Expect = 7.7e-33
Identity = 76/87 (87.36%), Postives = 77/87 (88.51%), Query Frame = 0


Query: 1  MRGAAAFLTVKNKSKLIHPPKGSW------VQRQGMKNDSEGESVVTKEKADPIAAFSRP 60
          MRGAAA LTVKNK KLIHP KGSW      VQRQGMKNDSEGESVVTKEKADPIAAFS+P
Sbjct: 1  MRGAAALLTVKNKPKLIHPTKGSWGSLTSTVQRQGMKNDSEGESVVTKEKADPIAAFSKP 60

Query: 61 PPLPPLLGPLAVFSLLETYLSPDGNDD 82
          PPLPPLLGPLAV SLLETYLSPDGNDD
Sbjct: 61 PPLPPLLGPLAVLSLLETYLSPDGNDD 87

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BLAST of CsaV3_5G002530 vs. NCBI nr
Match: CBI34376.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 95.5 bits (236), Expect = 2.3e-16
Identity = 48/88 (54.55%), Postives = 58/88 (65.91%), Query Frame = 0


Query: 1  MRGAAAFLTVKNKSKLIHPPKGSW-------VQRQGMKNDSEGESVVTKEKADPIAAFSR 60
          MRG AA L  KNK K I+PPKG+W       ++R+G  ND   +  +T EK DPI AFS+
Sbjct: 1  MRGTAALLPAKNKLKQIYPPKGTWGSASTSTLKREG-NNDFREQGTITNEKIDPIVAFSK 60

Query: 61 PPPLPPLLGPLAVFSLLETYLSPDGNDD 82
          PPPLPP+LGPL   SLLE + S D NDD
Sbjct: 61 PPPLPPVLGPLVALSLLEAWWSRDSNDD 87

[Close]

BLAST of CsaV3_5G002530 vs. NCBI nr
Match: PRQ17609.1 (hypothetical protein RchiOBHm_Chr7g0196851 [Rosa chinensis])

HSP 1 Score: 87.8 bits (216), Expect = 4.7e-14
Identity = 48/88 (54.55%), Postives = 55/88 (62.50%), Query Frame = 0


Query: 1  MRGAAAFLTVKNKSKLIHPPKGSW-------VQRQGMKNDSEGESVVTKEKADPIAAFSR 60
          MRG AA   VKN+ K IHP KGSW         +QG  N  E   +VTKEK DPI  FSR
Sbjct: 1  MRGVAALSPVKNRFKQIHPIKGSWGTVVTSTSNKQGNSNYGEA-GLVTKEKTDPIVVFSR 60

Query: 61 PPPLPPLLGPLAVFSLLETYLSPDGNDD 82
          PPPLPP++GPL V SLLE   S + +DD
Sbjct: 61 PPPLPPVIGPLLVLSLLEASWSRNNDDD 87

[Close]

BLAST of CsaV3_5G002530 vs. NCBI nr
Match: XP_015896471.1 (uncharacterized protein LOC107430187 [Ziziphus jujuba])

HSP 1 Score: 85.5 bits (210), Expect = 2.3e-13
Identity = 45/88 (51.14%), Postives = 54/88 (61.36%), Query Frame = 0


Query: 1  MRGAAAFLTVKNKSKLIHPPKGSW-------VQRQGMKNDSEGESVVTKEKADPIAAFSR 60
          MRG AA    KNK K I+P KGSW        ++Q      E    VTKEK  P+ AFSR
Sbjct: 1  MRGIAALTPAKNKFKQIYPLKGSWGNAATSTPKKQRNNEPGEERGPVTKEKDVPVVAFSR 60

Query: 61 PPPLPPLLGPLAVFSLLETYLSPDGNDD 82
          PPPLPP++GPL + SLLET+   DGND+
Sbjct: 61 PPPLPPVVGPLVLLSLLETWSGRDGNDN 88

[Close]

BLAST of CsaV3_5G002530 vs. ExPASy TrEMBL
Match: A0A0A0KKH2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G152830 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.1e-36
Identity = 81/87 (93.10%), Postives = 81/87 (93.10%), Query Frame = 0


Query: 1  MRGAAAFLTVKNKSKLIHPPKGSW------VQRQGMKNDSEGESVVTKEKADPIAAFSRP 60
          MRGAAAFLTVKNKSKLIHPPKGSW      VQRQGMKNDSEGESVVTKEKADPIAAFSRP
Sbjct: 1  MRGAAAFLTVKNKSKLIHPPKGSWGSLTSTVQRQGMKNDSEGESVVTKEKADPIAAFSRP 60

Query: 61 PPLPPLLGPLAVFSLLETYLSPDGNDD 82
          PPLPPLLGPLAVFSLLETYLSPDGNDD
Sbjct: 61 PPLPPLLGPLAVFSLLETYLSPDGNDD 87

[Close]

BLAST of CsaV3_5G002530 vs. ExPASy TrEMBL
Match: A0A5A7TME5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G002300 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 3.7e-33
Identity = 76/87 (87.36%), Postives = 77/87 (88.51%), Query Frame = 0


Query: 1  MRGAAAFLTVKNKSKLIHPPKGSW------VQRQGMKNDSEGESVVTKEKADPIAAFSRP 60
          MRGAAA LTVKNK KLIHP KGSW      VQRQGMKNDSEGESVVTKEKADPIAAFS+P
Sbjct: 1  MRGAAALLTVKNKPKLIHPTKGSWGSLTSTVQRQGMKNDSEGESVVTKEKADPIAAFSKP 60

Query: 61 PPLPPLLGPLAVFSLLETYLSPDGNDD 82
          PPLPPLLGPLAV SLLETYLSPDGNDD
Sbjct: 61 PPLPPLLGPLAVLSLLETYLSPDGNDD 87

[Close]

BLAST of CsaV3_5G002530 vs. ExPASy TrEMBL
Match: D7TV51 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_02s0025g00230 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.1e-16
Identity = 48/88 (54.55%), Postives = 58/88 (65.91%), Query Frame = 0


Query: 1  MRGAAAFLTVKNKSKLIHPPKGSW-------VQRQGMKNDSEGESVVTKEKADPIAAFSR 60
          MRG AA L  KNK K I+PPKG+W       ++R+G  ND   +  +T EK DPI AFS+
Sbjct: 1  MRGTAALLPAKNKLKQIYPPKGTWGSASTSTLKREG-NNDFREQGTITNEKIDPIVAFSK 60

Query: 61 PPPLPPLLGPLAVFSLLETYLSPDGNDD 82
          PPPLPP+LGPL   SLLE + S D NDD
Sbjct: 61 PPPLPPVLGPLVALSLLEAWWSRDSNDD 87

[Close]

BLAST of CsaV3_5G002530 vs. ExPASy TrEMBL
Match: A0A2P6P6R2 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0196851 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.3e-14
Identity = 48/88 (54.55%), Postives = 55/88 (62.50%), Query Frame = 0


Query: 1  MRGAAAFLTVKNKSKLIHPPKGSW-------VQRQGMKNDSEGESVVTKEKADPIAAFSR 60
          MRG AA   VKN+ K IHP KGSW         +QG  N  E   +VTKEK DPI  FSR
Sbjct: 1  MRGVAALSPVKNRFKQIHPIKGSWGTVVTSTSNKQGNSNYGEA-GLVTKEKTDPIVVFSR 60

Query: 61 PPPLPPLLGPLAVFSLLETYLSPDGNDD 82
          PPPLPP++GPL V SLLE   S + +DD
Sbjct: 61 PPPLPPVIGPLLVLSLLEASWSRNNDDD 87

[Close]

BLAST of CsaV3_5G002530 vs. ExPASy TrEMBL
Match: A0A2N9IQZ8 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17274 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.1e-13
Identity = 45/87 (51.72%), Postives = 54/87 (62.07%), Query Frame = 0


Query: 1  MRGAAAFLTVKNKSKLIHPPKGSW------VQRQGMKNDSEGESVVTKEKADPIAAFSRP 60
          MRG A F   K K K I+P  GSW      + ++   N++  E  +TKEK  PI AFSRP
Sbjct: 1  MRGTAVFSPAKYKFKQIYPIAGSWGTVATSMPKKQENNNTGKEGPITKEKNGPIVAFSRP 60

Query: 61 PPLPPLLGPLAVFSLLETYLSPDGNDD 82
          PPLPP+LGPL   SLLET+ S D NDD
Sbjct: 61 PPLPPVLGPLVALSLLETWSSRDSNDD 87

[Close]

BLAST of CsaV3_5G002530 vs. TAIR 10
Match: AT4G23493.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 42.7 bits (99), Expect = 1.6e-04
Identity = 20/51 (39.22%), Postives = 33/51 (64.71%), Query Frame = 0


Query: 31 KNDSEGESV-VTKEKADPIAAFSRPPPLPPLLGPLAVFSLLETYLSPDGND 81
          +N SE E++   +E  +P+ A SRPPP  P +GP+ ++SLL+++ S    D
Sbjct: 36 ENISESETMKKMEETVEPMVALSRPPPFSPFVGPVLMYSLLQSWTSSRDED 86

The following BLAST results are available for this feature:

BLAST of CsaV3_5G002530 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647849.1	4.7e-38	100.00	hypothetical protein Csa_000256 [Cucumis sativus]	[more]
KAA0042731.1	7.7e-33	87.36	hypothetical protein E6C27_scaffold44G002300 [Cucumis melo var. makuwa]	[more]
CBI34376.3	2.3e-16	54.55	unnamed protein product, partial [Vitis vinifera]	[more]
PRQ17609.1	4.7e-14	54.55	hypothetical protein RchiOBHm_Chr7g0196851 [Rosa chinensis]	[more]
XP_015896471.1	2.3e-13	51.14	uncharacterized protein LOC107430187 [Ziziphus jujuba]	[more]

BLAST of CsaV3_5G002530 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G002530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKH2	2.1e-36	93.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G152830 PE=4 SV=1	[more]
A0A5A7TME5	3.7e-33	87.36	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
D7TV51	1.1e-16	54.55	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_02s0025g00230 PE=4 SV=...	[more]
A0A2P6P6R2	2.3e-14	54.55	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0196851 PE=4...	[more]
A0A2N9IQZ8	1.1e-13	51.72	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS17274 PE=4 SV=1	[more]

BLAST of CsaV3_5G002530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23493.1	1.6e-04	39.22	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..41

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G002530.1	CsaV3_5G002530.1	mRNA