CsaV3_5G000550 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G000550
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5: 278758 .. 279547 (+)
RNA-Seq ExpressionCsaV3_5G000550
SyntenyCsaV3_5G000550
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGAGAAAATTTTGTCGAGGAAATTCGTCAGGACCTCAGGGAAGGAAGAAAAAGAAACACCCCCGATATAAACAATCACAATGGCCAAGTTCTTATATGTTCTTAAGAACATACCATTCTTTTTTCATTTCATATACCATGTACGGAGTCATTGATGGATACAATCTGAAAAGGAGACAAGAAAGAAAGTAGAAGACCTCTCTGCTTGGGTTTCGACCCAGTGCAGGGGTTTAACAGTATCATACAAGAAGAGATTCGAAATCAAGATGATTCTGATATCTTTTCAGGTGAATGCAGAAGTTTGCAACAAATGTTTTAGAACAGTGTTATTGGCTAACAAGGATAACGAACCCGACACCGAACAATTGCGACGCTATCCTTCCATGACATTGGATGGGAAACATCAAAAGCATCCACCCAACTGCGTTGTTACAAAAACAAAAGAAAATAGAAAAATCATGGGGTTTGAAAAGCACAAATACTTTGTGTATGTTTATGGACATGAAGCAATGATCAACCTATCAGAACAAACATCAGTCTTAAATCAGACCTTTCAATAGCATATTACTGTATCAGTTTTTTTTTTGGATTCCTATTTTTTAGAAACAGAAGCATTTGGTATCTGTTTTTCTTTCTTTTCTTGTTTCTCATTTTTCAGAAATGTTTTCAAAGTTGGGTAGAAATTTTGGAAACAACAAAACCAAGTTTCTTGAATCAGGTTTATGTTTTCATTTGTTTTTCAAAATAAAAAGTAAAAGTATTATTTTATTATTATTTACCTTTAA

mRNA sequence

ATGGCAAGAGAAAATTTTGTCGAGGAAATTCGTCAGGACCTCAGGGAAGGAAGAAAAAGAAACACCCCCGATATAAACAATCACAATGGCCAAGAGACAAGAAAGAAAGTAGAAGACCTCTCTGCTTGGGTTTCGACCCAGTGCAGGGGTTTAACAGTATCATACAAGAAGAGATTCGAAATCAAGATGATTCTGATATCTTTTCAGGTGAATGCAGAAGTTTGCAACAAATGTTTTAGAACAGTGTTATTGGCTAACAAGGATAACGAACCCGACACCGAACAATTGCGACGCTATCCTTCCATGACATTGGATGGGAAACATCAAAAGCATCCACCCAACTGCGTTGTTACAAAAACAAAAGAAAATAGAAAAATCATGGGGTTTGAAAAGCACAAATACTTTGTGTATGTTTATGGACATGAAGCAATGATCAACCTATCAGAACAAACATCAGTCTTAAATCAGACCTTTCAATAG

Coding sequence (CDS)

ATGGCAAGAGAAAATTTTGTCGAGGAAATTCGTCAGGACCTCAGGGAAGGAAGAAAAAGAAACACCCCCGATATAAACAATCACAATGGCCAAGAGACAAGAAAGAAAGTAGAAGACCTCTCTGCTTGGGTTTCGACCCAGTGCAGGGGTTTAACAGTATCATACAAGAAGAGATTCGAAATCAAGATGATTCTGATATCTTTTCAGGTGAATGCAGAAGTTTGCAACAAATGTTTTAGAACAGTGTTATTGGCTAACAAGGATAACGAACCCGACACCGAACAATTGCGACGCTATCCTTCCATGACATTGGATGGGAAACATCAAAAGCATCCACCCAACTGCGTTGTTACAAAAACAAAAGAAAATAGAAAAATCATGGGGTTTGAAAAGCACAAATACTTTGTGTATGTTTATGGACATGAAGCAATGATCAACCTATCAGAACAAACATCAGTCTTAAATCAGACCTTTCAATAG

Protein sequence

MARENFVEEIRQDLREGRKRNTPDINNHNGQETRKKVEDLSAWVSTQCRGLTVSYKKRFEIKMILISFQVNAEVCNKCFRTVLLANKDNEPDTEQLRRYPSMTLDGKHQKHPPNCVVTKTKENRKIMGFEKHKYFVYVYGHEAMINLSEQTSVLNQTFQ*
Homology
[Close]
BLAST of CsaV3_5G000550 vs. NCBI nr
Match: KGN49869.1 (hypothetical protein Csa_000070 [Cucumis sativus])

HSP 1 Score: 325.5 bits (833), Expect = 2.6e-85
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0 

Query: 1   MARENFVEEIRQDLREGRKRNTPDINNHNGQETRKKVEDLSAWVSTQCRGLTVSYKKRFE 60
           MARENFVEEIRQDLREGRKRNTPDINNHNGQETRKKVEDLSAWVSTQCRGLTVSYKKRFE
Sbjct: 1   MARENFVEEIRQDLREGRKRNTPDINNHNGQETRKKVEDLSAWVSTQCRGLTVSYKKRFE 60

Query: 61  IKMILISFQVNAEVCNKCFRTVLLANKDNEPDTEQLRRYPSMTLDGKHQKHPPNCVVTKT 120
           IKMILISFQVNAEVCNKCFRTVLLANKDNEPDTEQLRRYPSMTLDGKHQKHPPNCVVTKT
Sbjct: 61  IKMILISFQVNAEVCNKCFRTVLLANKDNEPDTEQLRRYPSMTLDGKHQKHPPNCVVTKT 120

Query: 121 KENRKIMGFEKHKYFVYVYGHEAMINLSEQTSVLNQTFQ 160
           KENRKIMGFEKHKYFVYVYGHEAMINLSEQTSVLNQTFQ
Sbjct: 121 KENRKIMGFEKHKYFVYVYGHEAMINLSEQTSVLNQTFQ 159

[Close]
BLAST of CsaV3_5G000550 vs. ExPASy TrEMBL
Match: A0A0A0KLX7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139470 PE=4 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 1.3e-85
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0 

Query: 1   MARENFVEEIRQDLREGRKRNTPDINNHNGQETRKKVEDLSAWVSTQCRGLTVSYKKRFE 60
           MARENFVEEIRQDLREGRKRNTPDINNHNGQETRKKVEDLSAWVSTQCRGLTVSYKKRFE
Sbjct: 1   MARENFVEEIRQDLREGRKRNTPDINNHNGQETRKKVEDLSAWVSTQCRGLTVSYKKRFE 60

Query: 61  IKMILISFQVNAEVCNKCFRTVLLANKDNEPDTEQLRRYPSMTLDGKHQKHPPNCVVTKT 120
           IKMILISFQVNAEVCNKCFRTVLLANKDNEPDTEQLRRYPSMTLDGKHQKHPPNCVVTKT
Sbjct: 61  IKMILISFQVNAEVCNKCFRTVLLANKDNEPDTEQLRRYPSMTLDGKHQKHPPNCVVTKT 120

Query: 121 KENRKIMGFEKHKYFVYVYGHEAMINLSEQTSVLNQTFQ 160
           KENRKIMGFEKHKYFVYVYGHEAMINLSEQTSVLNQTFQ
Sbjct: 121 KENRKIMGFEKHKYFVYVYGHEAMINLSEQTSVLNQTFQ 159

The following BLAST results are available for this feature:
BLAST of CsaV3_5G000550 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49869.12.6e-85100.00hypothetical protein Csa_000070 [Cucumis sativus][more]
BLAST of CsaV3_5G000550 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G000550 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KLX71.3e-85100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139470 PE=4 SV=1[more]
BLAST of CsaV3_5G000550 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 12..33

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G000550.1CsaV3_5G000550.1mRNA