CsaV3_5G000490 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G000490
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5: 225815 .. 229084 (+)
RNA-Seq ExpressionCsaV3_5G000490
SyntenyCsaV3_5G000490
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCATCTGTAGTTCCTCTCTGGAATAGGCATTTTTTTCAGTGCTTGCTATCTAAATTTATTGAAACTTGTGTTCTTAATAATGGAGACTATGGTTCTCTCTTGCCTTGCAGTAATCTAGAAGGGATGGCTTGGTCACCTTTGTCTTATTGTAGTAATGAAAAAAAGGTTAAAACGTCCCTCTCTTGTTTACAAAAACTACCCTAAAATATATTGGAAGTTGCAATTATACCAGGTAAATTTGAGAGTCTAGTTTGAACAAGTTTTGATTTTAATTTTTACAATTGAATGTTCGAAGTTATAATCGTAACTTATAACCTTACCTTGAGTTGGTTGTTGTTTTTGCCCTTTTTCTTTTTCCATTTAGAACATTATAATTTTATTTAACTTTTTAAAAGTTTGGTTTATAATAATGTGAGTTTGAGGTGATGGTAGATGCCCAGGGTAGTTGACAATTTTTAAACATGAAGGAAAGAGCGCGAGAGAAATTAATATGTATAATCATAATTTACCACTCGTGTGTTTTCTTGTGTGTTTAGTCTTTCGAGTGTTATCTTTTATGTTTAGATTTTTTTTTAAATATTAATTGTTAGAAGTATTTTTTTAACTATGATCAAATCAAATCGTCTAAACAAACCAAGAATGTTATATTTTTGAAAAATTATTGAGGTTTGAGGTCTTCTCATTATTTTAAAGTTATCATTTTGAGGAAGTGCACAAAGTTCAAAAGGAATATTGTATGAAATTATTTTTTGGGCTATTATTTTTTGGGCTAACCTGACCCTTGGATACGTCATTATTTCATTTTCAAAACTTTATGGTCCATCCACCTTTTGCCTTCAACGTCAATCTGATTTTTTTTTCCATAAAATTTGTGTACAGGGTAATATTTTAATTTGTCGAGATTCTTTCTCTAAAAATTTGTATAAATTTTGGGTCAATAATGAAGGGAACATATGAAATTGAAATAGAAAACTTTGTATAGGTTTTAACCACCTGTTGTGGCTTTGTTGGACTTTCAATCAACATGAATTCTCAAAATGTCTCATCACATTTATAATGATTTATAGAGCTAAGTATACACTATATTATATGTCACCTGCCCATTATTTTATAAGTTTTTGCAATGTCATTTTAAGAATTTTGCTTAAATGGAAAGATAATATGTTTCATGTTTTCAAAAGTGAATTGGAAAAATCTTTTTACTTTTAAATATGAATTCAAATTATTTTTTATAAAGAAAAAATTTCTAAAGGCTTAAAATCATTTATTTTTAAGTAGTGTTTGATTCAATTACAAATTTGATATTTATAGTTAGAGAAAAATAAATTTTATAGTGAGTAGAATATTTACAAAAACAAAGCAACTAAATAATATTCACTAAATGGGTGAAGCTGTTAAATCTTGAGAAGATATATTAGTCTTTGGTTATGAGATATAGTTTCTAAATCTCCAACTAAAATCAATATATATAAGGGAAAAGAAAGAAAAGATTGAGTCTTTGAAGTTGCTCTTGTTCTCTCCTCTCTTTTGTTTGTATTGTTTCTGTTTGAAGCAAAATTTATTGGAAAATTCTCCTCTATTGGATTCTCTTTCTATTTTATATTATAGAGGAAATGTGATTTTTTTTTCTCTCTCTTTATATATTGTGATGATTAAGATGGATTAAGAGATAATGGGCTTAGAGAAAGAGACAGAAACAAGAGGTGAGTTGATTTTTTAGCTTCATTTTCAATATCCCATTTCAGAGTTTGTTGATTGATGATGGGTTTCTTTATTCGACATGGATGATCATCATTGATGATTCTTTTTGTTTTTTTGATTTTCGAACCAGAACGATAGAAGTCTATTTCTTACCATTCTATTTGGAGCTGCAATACTCTTTTTCCCATTATTTTTCATAAACTGGAAGAAAGTGTTCTTCAATCTGTTCTTAAAGTCAAGTGGGTCATTTTCACTTTAACGCATGCGATTACGAGTTCTTTTGTGGATGTTTGTGCTTTGTGTTTGATCAATAAGACTTTGAAACTTTACGCTGTTTCGAATCATGGGTTTCTTTTTGTTCCTCGAATTGTAGGTTCTGAATTTGGAAGGTCAAATGTTTAGCCCAAAATATCCCAGTTTCCGATCTCTCTCTCTCTCTTTTCTTCCGAATTTGCTGGTTTCGTGGAATCTAGTTCTGATTCTTAATTCTGGAATCTGAATTCTCATCCCTTTAGTGGTTGATCGTTTTCGTCGGCTTCTCAGGTCTGATTGATTTGTTCGAATCCGGGCCTTGACAAAAAGTTGCTTCTAACTTTTGATGTCAAGTTTCTGATTTTATCATTCATTCCAAAGATTCTTATTCGTGGTGGATTTTGGTCTAGTGAAAAAGTGTTTTGAGTGTACTCTCATTGTATTTGATTGGATCCCGTGGGTGATTCATTACCCTTTTGATTATTCGAGCTTCTTAAAATGTACTAATTTGATGAACTATAGTTCTTAATTTCATTAACCTTTTCTTCTCTCTGTTTGGCTGTTGAAGAACTCTGAAATTCTGGAACTACAATTCTTTAATCCATGCCATCGTTGCTTTCATTCATTGCAGGTTGTGGAGAATCATGTTCCATCTGAAACTGAATTTTGTTAAGGTATCTATCTTACCTTGAGACTTTTGTAAAATTTTGGCTAATAGGTTTGAATAATCATGTGACCTTTGCCCCATTTGTTGGTAAAGAACAATTAAAGGTTTGTCCATTTTGAAATTACGTGATTCCTTCTGCTACTTTTACTTTTTAAAGTTCTGCCTTGAAGATAATATCAAGCAATTCTGTGACTAGAATGATTATTAGCTCTAGTAAATTGCAATTTGAAATGTTTAAATGGTCCTGTTTCTATGGTAACTATCAATTCTATTGTGATCTTTACGTCTAAAAATTGCAGTTCGAAATGATTAAACTGTCCTGTATCTGATTTTGAGTAAAATGTGTTCTAATCCCATTTAGAGACCTTACATTTGACATTACCATCCAAAACTTCTTGATCTGAAAATCCAGTGCAACCTACTCTTGCTTCCCTTTATACATCTCAATCATTCATTCTTTTTTGTCTGTCTCCCTCCCACATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTCATATATTATTTTCACTGACCGAATAAATTAAAAGCAAAGCATATTTACTCCAGTTCATTTGGCATTTATTAGATCATTTGTTTCTTCTGGTAAGGTTGGTCGTAATCCAGTATGTTCGGTGTAA

mRNA sequence

ATGCCATCTGTAGTTCCTCTCTGGAATAGGCATTTTTTTCAGTGCTTGCTATCTAAATTTATTGAAACTTGTGTTCTTAATAATGGAGACTATGGTTCTCTCTTGCCTTGCAGTAATCTAGAAGGGATGGCTTGGTCACCTTTGTCTTATTGTAGTAATGAAAAAAAGGTTCTGAATTTGGAAGGTCAAATGTTTAGCCCAAAATATCCCATGGTTGATCGTTTTCGTCGGCTTCTCAGGTTGTGGAGAATCATGTTCCATCTGAAACTGAATTTTGTTAAGGTTGGTCGTAATCCAGTATGTTCGGTGTAA

Coding sequence (CDS)

ATGCCATCTGTAGTTCCTCTCTGGAATAGGCATTTTTTTCAGTGCTTGCTATCTAAATTTATTGAAACTTGTGTTCTTAATAATGGAGACTATGGTTCTCTCTTGCCTTGCAGTAATCTAGAAGGGATGGCTTGGTCACCTTTGTCTTATTGTAGTAATGAAAAAAAGGTTCTGAATTTGGAAGGTCAAATGTTTAGCCCAAAATATCCCATGGTTGATCGTTTTCGTCGGCTTCTCAGGTTGTGGAGAATCATGTTCCATCTGAAACTGAATTTTGTTAAGGTTGGTCGTAATCCAGTATGTTCGGTGTAA

Protein sequence

MPSVVPLWNRHFFQCLLSKFIETCVLNNGDYGSLLPCSNLEGMAWSPLSYCSNEKKVLNLEGQMFSPKYPMVDRFRRLLRLWRIMFHLKLNFVKVGRNPVCSV*
Homology
[Close]
BLAST of CsaV3_5G000490 vs. NCBI nr
Match: KGN49863.1 (hypothetical protein Csa_000232 [Cucumis sativus])

HSP 1 Score: 224.9 bits (572), Expect = 3.1e-55
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MPSVVPLWNRHFFQCLLSKFIETCVLNNGDYGSLLPCSNLEGMAWSPLSYCSNEKKVLNL 60
           MPSVVPLWNRHFFQCLLSKFIETCVLNNGDYGSLLPCSNLEGMAWSPLSYCSNEKKVLNL
Sbjct: 1   MPSVVPLWNRHFFQCLLSKFIETCVLNNGDYGSLLPCSNLEGMAWSPLSYCSNEKKVLNL 60

Query: 61  EGQMFSPKYPMVDRFRRLLRLWRIMFHLKLNFVKVGRNPVCSV 104
           EGQMFSPKYPMVDRFRRLLRLWRIMFHLKLNFVKVGRNPVCSV
Sbjct: 61  EGQMFSPKYPMVDRFRRLLRLWRIMFHLKLNFVKVGRNPVCSV 103

[Close]
BLAST of CsaV3_5G000490 vs. ExPASy TrEMBL
Match: A0A0A0KJU5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139410 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.5e-55
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MPSVVPLWNRHFFQCLLSKFIETCVLNNGDYGSLLPCSNLEGMAWSPLSYCSNEKKVLNL 60
           MPSVVPLWNRHFFQCLLSKFIETCVLNNGDYGSLLPCSNLEGMAWSPLSYCSNEKKVLNL
Sbjct: 1   MPSVVPLWNRHFFQCLLSKFIETCVLNNGDYGSLLPCSNLEGMAWSPLSYCSNEKKVLNL 60

Query: 61  EGQMFSPKYPMVDRFRRLLRLWRIMFHLKLNFVKVGRNPVCSV 104
           EGQMFSPKYPMVDRFRRLLRLWRIMFHLKLNFVKVGRNPVCSV
Sbjct: 61  EGQMFSPKYPMVDRFRRLLRLWRIMFHLKLNFVKVGRNPVCSV 103

The following BLAST results are available for this feature:
BLAST of CsaV3_5G000490 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49863.13.1e-55100.00hypothetical protein Csa_000232 [Cucumis sativus][more]
BLAST of CsaV3_5G000490 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G000490 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJU51.5e-55100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139410 PE=4 SV=1[more]
BLAST of CsaV3_5G000490 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G000490.1CsaV3_5G000490.1mRNA