CsaV3_5G000070 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G000070
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	serine/arginine-rich splicing factor SR34A
Location	chr5: 42567 .. 51326 (+)
RNA-Seq Expression	CsaV3_5G000070
Synteny	CsaV3_5G000070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAGTCGTTTTTCTCGCACAATATATGTTGGAAACTTGCCCTCAGACATAAAAGAGTATGAAATTGAAGATTTGTTCTACAAGGTAGATTTCCTTGGTCTTAGCTAATTCTTTTCATGGTGTCTGTGCAAATTGTTATTTTCTCTGTTCATATTTTAGATGTGAAAGCTCCTTGCATTGGTGATCTACAGCTGTTCAAATTTATTTTTGTTTTAGTTCTGAAAAAATCTACTACATGTATTTCCTGGTTTCAGCAGATTTAAGGTTTAATTTGTTTGAACTTACAATTTTTATGTCTACATGATTGATATTTTCTTGGCAGTATGGCCGAATTTTGGATATTGAATTGAAGATTCCACCACGCCCTCCATGTTATTGTTTTGTGGAGGTATCATGTTTTTTTTAATCTTTAGTTTGTACATACTTTTAGCTGTATTTTCAAAGTTCATGATATTATGTGCTTTCTGTTGTTAGTTTGAGAGTGTTAGGGATGCAGAAGATGCAATCAGAGCTCGTGATGGATATAATTTTGATGGTTGTCGTCTAAGGGTATCAACTAAGTTTTCTTTTGCCTTCATTTCCTGATTCCTGTCATTTTTGTTGTATTCATATGTTCAGTTTTTCAAATAGGTTGAGCTTGCACATGGTGGTAGGGGCCCTTCATCTAGTGATCGTCGTAGTAGTTATGGTGGTGGTGGTGGTGGGTGGTGGTGGTGGTGGTGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGAGGGGGAGGGAGGGGGGGAGGACGTTTTGGTGTTTCAAAACGATCAGAATATCGAGGTGTGAGAATATGTTCAGTGCTGCTATAAGGAACCACGATGCTGGAAAATTTTCCCATGCATTGTATTTCATTAGGTCCATATGAATTCATTGCGCTAATGGATGTTTAATTTTTCTCAGTTATTGTACGTGGTCTTCCGTCTTCTGCTTCTTGGCAGGATTTGAAGGTGTTGAAATCTTTATTGTTCAATGAAAGATCAAGGTTTTCTTTTATTGGATTATGTTGATATGATGAATTTACTGGAATAATGCTTTCAGGATCATATGCGCAAGGCGGGGGATGTGTGTTTTGCTGAAGTTTCACGTGATAGCGAAGGTTAAATACACCTTTTTCAGCTATTGTTTTTTTTTTCCAGTTTGTGCCCAACGGTTTTTCCGTGTAGGAATTACTTAGCAAGCAAATGTTGCCTATTTTTTCTTTTTTACAAATTTAACTCATTTAATAACTGATATGGGTTAAAATGTAAGCCTGTGTGTCATCCATAATTCTTACTGCACATATTTAATTAAGCATTTGTTCCTTGCCTGGCTTCAGAACATAATGTGATGGAGGGGTCTTTATAGTTGTATTTATCTCTAAAAAGTGGTTTACTTTCTATTTGGGGTCTATGAATCAAGCTTATGAAAGTTTGGCATATCTCTGTTAGAGAAATGCAAGTCAAACAATCTTGATAATTCTTATCTTTTGGACAACAAGGTGTTCGGATAGAGAAATGCAAGTCAAACAATCTTGATAATTCTTATCTTTTGGACAACAAGGTGTTTGGATAGAGAAATGCAAGTCAAACAATCTTTGATAATTCTTATCTTTTGGACAACAAGGTGTTTGGATAGCTGAACTTTTCTTGAAAGTTCCCCTTGTGTTTCCACCAAAAGAGGAGGCTAACCGCAAAAAGGGCCTCTAATCCAGATTCCCAGAAAAATGAGTTCTAATGGGTAGTTACAAAAAGGTTTTGCCACCTAAGCTCACAAGGAAAAAGGAAATGTGACAAGAGATCAAAGATAGTTTAAGAATGCTCAAGCCCTATAAAAATTCTATTGTTCCTCTTCTAATAGATTCCAAATAATAGCACTTTGGCTTGCCACAAAAAAATTTATTTCTTGCAGAAGGGGATGGAGAAAGTACTTCTTGATCATTCCCTGTAGCCCTTGTCTAACCTAGTGAAGATCAAACTGCTCAAAAAGTTGATTCAAAACTACATAAGCTATATAGCACAAGTCCAATGAATTTGATAATTGATTGCTGGTTGAAATTCTGAAATTTGTTCTATGGATGGATTTCTTGCAATTTCTTGCATCCTTGAATTTGATTGTTGGCCATCATTTTCACTTCCAACATTAACTTCTCAATAGCTTGTTGGAGCATGACCGTTGAGGTTTGCCTCATAAACCAGCCACTAAAGTTTTCAAATTGCCAAGGTTTGTGAGGAAGTAGAGGGATGCTTCTGCATCATGAGATTGGATTTCAGGAAGCTTGTTGGTGTTCTTGATCATCAATTCACCATCAGGCCTGTTCATGAAGGCTCTGATATCAATTTGATGTAGATTAAGAATTTTGGAGAATTCTTGAAGGAAATGTATTATTCATTTTGTTCAGAAGACTCTTATTTATAGAGTTGTAATACACGTTAGCTTGGGGTAAGGAGGTTAACTAAACTATTTAACCCTATTATCCAGTTAACCCTATTCTTCTTACCCCAATTTTCACCTTCTACATCGAGGTAAGGTTAGAGACCAGAGCGAGAAAGGTTTGACCAAATAGAGAAAAAAATGATTGACATGAAAAATTGACAAACTTGGAATCTAAATATGAACACCCCTTCTTTTTTAGGGTATAGCAAAACTCTCAAGCAAATGGAGAAGATCGATAATGTATTTGTTTCCCTTTCAGACAAAAGACAACAGCCCTTTGGCTTGCCTTTTAATGAGCTTATTTCTGGATGTTATGAGGCAAGAGCAATAATCTTTTTTTTTTACTCTTCTAGTTTTGATCATTTTGTGGATTTGGTTTTTTCTACTGCTTTGAATTGGTGCAAATCAAAGGATACCCTTCTTTAAGTAACATTATTTATTAATTTACCTCACACATGAATGTATAGGCAAATTTGTAATAAAAAATAAACTTGGGAGAGAGTACGGAAGATGGAAGATGAAGAACACCACTTTCATCCACAAAGATGAAAAACAACACTTTCAAACACAAATCCTTCAAAATCCCATAGTTCAGTACAAATATTCCAACAGAAAAAAATTGCTAAAATATCTTGAACATGCTTTGAAAAATGTTAAAAATCTCCAAAACTCCAATTTGACATAAGTTACACCGAAACTTAATGGATATTCAAGAACATAAAATAAAACCCAAAAACTTGCTCAAAATTAAGATTTTGAAAATGACAATGCTAGTGATAGTGATCTCAAGGTATGACATCAAAGGTGTCAGAAGATTTCGTGGTGGTAGCTGGAATCGACATCCAGAATCGGTTGGAGAGAGCAAATAACTCCCCAAATAAAATCTCACTGACGGTCCACGACGGTAGATTGCACGACTAGAGTGGGGGCAACAGTCAAGGGAGGTGACAGGGACAGAAGTGGCGAGTTTAGAGGTGTTGCTTATTGAAGGAAGAGGGGGAGATGCTGCAAGTGTGCTTCTTCAGCTTCTCCAAGTTTCATTTTTTATTACAAATTTACCCCTCTCCTCTCTTCATGTGTGAGTAGGATTAATAAACAATATTTAATTTAAAAAGGGATTGATTGCAACCATTTAAAAACTATAAGGGTACAAATTGAAAATTAATGGGTGTGATTGTTACCAACTCCATAGTAAGGGATGGTTTGTGCAATTTTCCAAAAAAAAAAAAAAAAAAAAACTCTGATAGAACACCAAGTAATTGTGTTCTAGTTTGATTGAAAATACTTCAAAGATTACAAAGAAGAATTTTTGAACAAACAATTGTGATTTCAAACATATAGAAAACTAAGAACACCAAAAGTATAAAAAAACATAACCTTCTTTGTCTATCCTGTCTCTCAAGGAAGAGTGCAGAAACCAAAAACTACCCAAAAACTGAACAACCCTCTCTTTCCCACTCCCCTCGTATTTAACTGCTCCTATCTTTTAACAGACTGTAACTTCCCCCTTACTAATGCTTAATGTGCCCTCACCCTCAATAACTTGGGACAATCTCGGGGTGGAATGATGTACTTGCTTGGGACAATCTCGGGGTGAACTAATGTGCCCTCACCCTCAATAACTCTTGCATTTTCTTGCTTCTTTCTTCTGCTATATTGAAGCACAATTTGGGGTCTAAAATACTCCCATCCCTTTTGAAATAAACACAATAGGATGTGGGGATTGGATGAATCATGTGTTGATATGTTCTACTTTCCTGGGGAGGAGAGATCTGAGGCTCATTTTATGTTATTGATGTCTTGATCCCTCTAGTGGTGTCTCAACTAAGTTTACCTTTTTTTTTTTTATTGAAACAGAAGCAAACATTTCGTTGGTATAATGAAAAGAGCTATTACTCATAGTACAATGAAACAAGAATCATAAAAGCCACTAAGGCTAGAACTAGGGATCGAGAGGAATACTAAGGCTAGACCTCAACTAAGTCTACCACCTTCTTAAGGTGGTTTTGTTGCTTTTGAGCTTAAATACTCACGATAAGCTCCAAAGGTCCAACTTATTCAATATTTTTGAGGGTGAGCTATATGCTTAAGAAGGTTATGATTGGCTGCTTGAAGGGCTTTTATTGGTTATGGTTCACTAGCAGTGATAAAATCTAGTGGGGATCTGGTACTCACTATCTTCTCTAGATTCTATGGAGAGAAGAAAATAGTTTGTTAGTCGAAGATGAGTATATTTTAATAAATTATTTTTGGGCTTTTGTTTAGCATACATCTTCTTGATGGTGCACAAATTACAGCCTTTTGATGATTATTAACAATTGAAAGGTGCTCCTCCATTAGCTCTTTTGGAAGGAGTCCTGTCAACCCCTGTCCTTTGGTTGCTTATTTCCGTTCAATTTGAACATATACCATTTTCTTCAGGAAAAAAACCATAACACCTTCTCTTGCAACTTCATATCATCATTATATTTTGTTGTATGATAATGGTGTTTTGGTGTTAACATTGTGTTATGTTGGCTTTTTTGATATTTGAAGAGGCAATGTTTTTTATTAGTTTATAATCCAGGGGTGTATTATCAGTAAAATTTACTTTTATAATGTTTCTTTTTGACACGTAACATAACACACTTGACATTCATTTACACTAACAACTAGGAGTTGTCGATTTTATTCTCCTTTTAAAAATTCCATCAAGCTTAGAAACTGAAATTACTTTGAATTGATTTGGTAATTAGATTAGATATTTACTATTTGAAGTCAACATGTCCAGGGACGTTTGGGATCGTTGATTATACTAACTACGACGACATGAAATATGCTGTAAGTTTTTCTAAAAAGCACATTTTTTCAGAAGTTCTGCATTACTTTATTTTGATAGTTGATGTTTTTCTATTATTTAGATACGAAAACTTGATGATACTGAATTCAGAAATCCTTGGGCGAGAGCATACATTCGGGTACCTTAACCTTTATTCGCATGCCATTTTGGTTATTTCGAAATAGCCTAATGCTGTGATATTTTTCATAATCAGCACACCCTCTTTCTTCAGCACTTAAGAAACTGGATTCAGTTGTCTGTGCCCCTTGTTTGTGGATAACATATCATATATGGTTGCAGGTGAAGAAGTACGATGGAAGTCCCACTAGGAGCAGGAGCAGGAGCAGGAGTAGAAGCCGTAGCCGTAGCCGTAGCCGTAGCCGTAGCCGTAGCCGAAGCCGAAGCCGAAGCCGGACTGCTAGACGAAATAGGAGGTTCCACTCTTTTACTGTTGGTTTGTATCACCCTCATGGCCTCTTTTGCGTTGTTGTTGTAATGTTTTCTTGTATGCTGCAGCAAATCAGCAGAACGACGATCTGTTTCTAGATCAGTTTCAAGATCAAGATCTCCATCTCCTATTAAATCTTCAAGGTACTTTGGCCTATGCGTGCTTTTTCCCAAAAGTTTGGATTTGCTTGACAAACATTTTTCTGCAAAAATATGCAGGCCACGGTCAAAATCAAGATCTGGATCACCACGTCAGGTATGCAACATTTGGTTTTAATGCTTCAAAAACTGTAAACTTTATAGCATCTATTTACACTCATGATAAATAATGTTATCTGAGCTGTATAAATTGGTAGTGATGTTTAAAAAGAACCTTTGGATAAAGGTTTAGAAGGGGTGTTTTTTTTATGGGGGAGGGAATGGGTACGATGGTTATCTTGTGGTCATCATTTTGTTTTTGGTAGCATGAGTATCTATCTTGTTGCCAATGGAAGTGATCAGAAGCTGAGAAGCATGGGATATGTATTCGATAATTATGGCACGTCATTTTTAAAAATATAGGACAACACGATATGGAATCATTCATTAAAACATACCCTTATTAGAAACACATAATTTTTTTATACAAGAAAGACATTTAAAGTTGATGATTTTATGCATTTATATGCTTAAAAACTAGTTGGTTGTATTTTGGATTCAAATTTTACTTTTATTATATATTTCTAATTAGTACGTGCAATAAGCATGTTGATCGTTTATATGCTTAACAATTGGAATATTGTTAAGGGGGATTTGGAAGGTGTGTTTAAAGAGTTCTTCAAAAGAGCTATCTTAAATCGATCCCTGGTTGAGACTTATGTGTGTCTAATAGAGTTGAGGATTTTAGGCCTATTAGTCTAATCACCTGTATTTATAAGATTTTGGATAAGGTCCTTGCTAATCGGTTAAGGAAAGTGATGCATTCTACAATTTTCGAGGCGCAAGGAGCTTTTTTAGCAGGTAGAGAGATCTTAGATCAATTCCTTATAGTCAATGAGGCAATTGAGGATGTTCATCAGAGGAAAAAGGAGGGAATCGTACTTAAGCTTGATTTTGAAAAGACCTATGATCATGTTGATTGGGATTTTTTGGTAAGGTGATAATGAAGAAAGGCTTTGCCTTTAGATGAAGGATGTAGATGTGGGGATGTGTTAGGAATGTTCAGTACTCTATCCTTGTCAATGGAACTCCTAAAGGTTCGATCTAAGCCTCTAGAGGTTTAAGGAAGCCAGAGTGTGCAGTACTCAAACCAAGCTTCTTGATGTCCTCAATCGTCTCATCCTTAAAGGAGTAGATGGAAACATTATTGAATCCCTTAGGATTGGCTCAAATGAGGTGGCTTATCCTACCTCCTGTTTGCTGTAACACTATCCTGTTTTGTTAGGGTAAAGAGGAGTCTTTTATGATCCTTAATCATATGGTGGAGTTTTTCGAGGATGTGTCTGGTCTTGAAATCAATAGGAGTAAATGTTAAATTCTAGGGATTATCCGTGACCAAAGGAAGATCGGAAGATGGGCGGAGTTGTTTGGATGTGAGATTGGATCTTTTCCCTCTTCCTACCTTGGTCTCTCTTTCGGTGGTAACTCGGAAGTTACATCGTGTTTGGACCATATTTCTGAGAAGGTTAAGGAAAGGCTTCTCAATTGGAAGAAAAGTTTCTTTTCCAAGGCAAGCTAGTTAACTTTGATTAGATCGTTTCTTAGTTGTATCTCAGTTTATCACTGTCCCCTTTTTTGTGTCCCTAGTTCAGTTTGTAAGTGTTGAAAAATCCATGAGGACTTTCTTTGGGAGCAGGTGGATGAAGGGAAGGGCTTTCATTTGGTCAACTGGTAGATGGTTGGAAGACCTATTAGTAAGGGAGGGTTTAGAGATTGGCAATTTAAGGTCTCACAATAGAGCTCTCTTGGCTAAGTGGCTTTGGGCTTTGCAATTAAACCCAAAGCCTAGTGGTTGGGAGACTTGTTATTTGTGAGCAAGTATGACAATCGCCTGTACGATTGAGTGGTGAAAGGGTTAAAGGCACACATTGAAATCCGTAAAAAGATATCTCGTTTGAACTTTCTACCTTTTCTCATTTTGTGAAGTGTGTGGTGGGAATGGAAAGGACATTTTTTTGGGAGGATCAGTGGGTGGGGGAGGGCGCTCTTTGTTCTGTCTTTCCTCATATTTGTCACCTTTCTTCCTTTAAAAATTGCACGAGTTCTGACTTCTTGATTTGGTCCGGTCTTTTTCCTTTGGGTTTTTTTGTAATCTGTCCAATAGGGAAACAATGGAGGTTGCCTTTCTGCTTTCTTTACTGGAGGAGGGGTCCTCTTTTAGTGAAGGATTAAGATTTCCAAGAAAGGTTTTGTATCCGGCAAGTCTTGTTTGGTCGTGTTAACACTTTTAATAGACTTGCTAGAAGGAAAACTTCACTTCTGGGGCCTTTTTGTTGCATTTTGTGCCGTAAGGCAGAGGAAGATCTGGACCATCTCTTGTGGGGCTGCCAGTATGTGAGATCTGTATGGAGCTTATCCTTGCAGGAGTTCGATGTCAGCATTGCTGGTTAGAGAGATGTGCATGGGAAGAAAGGCCACTTGTTATGGCTTGCTGGGGTGTGTGCACTTATGTGGGATATTTGGGGGGAGAGAAATGATATAGTTTTTATAGGGAAGAATAGAGACTCCAGTGAGATTCGGTCTTTAGTGAGATTTCACGTGTCCTTTTAGGCTTCGGTTTCATAGCTTTTTTTGTCACTATTTGCTTGGAAACATTAATCTTAGTTGGATCCCCTTCCTTTAGTGGGGTTTTTTTTTTTTGTTGAGCTTTTCTTTTTTGTATGCCCTTATATTCTTTAATGAAATTTGTTTATGTAAAAAAAATCCAATGCATTTGGTCTTATTTTGACTTTGTACAACGTCTAATAAACACATCTATTGCACTAAATACTTTGAATAAGTAAGATAATGGAAATTCCTTTTTCAGGCACGAGAAGGAAGCGAGTGA

mRNA sequence

ATGAGTAGTCGTTTTTCTCGCACAATATATGTTGGAAACTTGCCCTCAGACATAAAAGAGTATGAAATTGAAGATTTGTTCTACAAGTATGGCCGAATTTTGGATATTGAATTGAAGATTCCACCACGCCCTCCATGTTATTGTTTTGTGGAGTTTGAGAGTGTTAGGGATGCAGAAGATGCAATCAGAGCTCGTGATGGATATAATTTTGATGGTTGTCGTCTAAGGGTTGAGCTTGCACATGGTGGTAGGGGCCCTTCATCTAGTGATCGTCGTAGTAGTTATGGTGGTGGTGGTGGTGGGTGGTGGTGGTGGTGGTGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGAGGGGGAGGGAGGGGGGGAGGACGTTTTGGTGTTTCAAAACGATCAGAATATCGAGTTATTGTACGTGGTCTTCCGTCTTCTGCTTCTTGGCAGGATTTGAAGGATCATATGCGCAAGGCGGGGGATGTGTGTTTTGCTGAAGTTTCACGTGATAGCGAAGGGACGTTTGGGATCGTTGATTATACTAACTACGACGACATGAAATATGCTATACGAAAACTTGATGATACTGAATTCAGAAATCCTTGGGCGAGAGCATACATTCGGGTGAAGAAGTACGATGGAAGTCCCACTAGGAGCAGGAGCAGGAGCAGGAGTAGAAGCCGTAGCCGTAGCCGTAGCCGTAGCCGTAGCCGTAGCCGAAGCCGAAGCCGAAGCCGGACTGCTAGACGAAATAGGAGCAAATCAGCAGAACGACGATCTGTTTCTAGATCAGTTTCAAGATCAAGATCTCCATCTCCTATTAAATCTTCAAGGCCACGGTCAAAATCAAGATCTGGATCACCACGTCAGGCACGAGAAGGAAGCGAGTGA

Coding sequence (CDS)

ATGAGTAGTCGTTTTTCTCGCACAATATATGTTGGAAACTTGCCCTCAGACATAAAAGAGTATGAAATTGAAGATTTGTTCTACAAGTATGGCCGAATTTTGGATATTGAATTGAAGATTCCACCACGCCCTCCATGTTATTGTTTTGTGGAGTTTGAGAGTGTTAGGGATGCAGAAGATGCAATCAGAGCTCGTGATGGATATAATTTTGATGGTTGTCGTCTAAGGGTTGAGCTTGCACATGGTGGTAGGGGCCCTTCATCTAGTGATCGTCGTAGTAGTTATGGTGGTGGTGGTGGTGGGTGGTGGTGGTGGTGGTGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGAGGGGGAGGGAGGGGGGGAGGACGTTTTGGTGTTTCAAAACGATCAGAATATCGAGTTATTGTACGTGGTCTTCCGTCTTCTGCTTCTTGGCAGGATTTGAAGGATCATATGCGCAAGGCGGGGGATGTGTGTTTTGCTGAAGTTTCACGTGATAGCGAAGGGACGTTTGGGATCGTTGATTATACTAACTACGACGACATGAAATATGCTATACGAAAACTTGATGATACTGAATTCAGAAATCCTTGGGCGAGAGCATACATTCGGGTGAAGAAGTACGATGGAAGTCCCACTAGGAGCAGGAGCAGGAGCAGGAGTAGAAGCCGTAGCCGTAGCCGTAGCCGTAGCCGTAGCCGTAGCCGAAGCCGAAGCCGAAGCCGGACTGCTAGACGAAATAGGAGCAAATCAGCAGAACGACGATCTGTTTCTAGATCAGTTTCAAGATCAAGATCTCCATCTCCTATTAAATCTTCAAGGCCACGGTCAAAATCAAGATCTGGATCACCACGTCAGGCACGAGAAGGAAGCGAGTGA

Protein sequence

MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGWWWWWWWRRRRRRRRRRRRRRRRRGGGGRGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRSRSRSRTARRNRSKSAERRSVSRSVSRSRSPSPIKSSRPRSKSRSGSPRQAREGSE*

Homology

[Close]

BLAST of CsaV3_5G000070 vs. NCBI nr
Match: XP_011654574.2 (serine/arginine-rich splicing factor SR34A [Cucumis sativus] >XP_011654575.2 serine/arginine-rich splicing factor SR34A [Cucumis sativus] >XP_011654577.2 serine/arginine-rich splicing factor SR34A [Cucumis sativus] >XP_011654579.2 serine/arginine-rich splicing factor SR34A [Cucumis sativus] >XP_011654580.2 serine/arginine-rich splicing factor SR34A [Cucumis sativus] >XP_011654581.2 serine/arginine-rich splicing factor SR34A [Cucumis sativus] >XP_031741184.1 serine/arginine-rich splicing factor SR34A [Cucumis sativus] >XP_031741186.1 serine/arginine-rich splicing factor SR34A [Cucumis sativus] >KAE8647793.1 hypothetical protein Csa_000628 [Cucumis sativus])

HSP 1 Score: 564.7 bits (1454), Expect = 4.9e-157
Identity = 303/303 (100.00%), Postives = 303/303 (100.00%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGWWWWWWWRRRRRRRRRRRR 120
           AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGWWWWWWWRRRRRRRRRRRR
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGWWWWWWWRRRRRRRRRRRR 120

Query: 121 RRRRRGGGGRGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG 180
           RRRRRGGGGRGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG
Sbjct: 121 RRRRRGGGGRGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG 180

Query: 181 TFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRS 240
           TFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRS
Sbjct: 181 TFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRS 240

Query: 241 RSRSRSRSRSRSRTARRNRSKSAERRSVSRSVSRSRSPSPIKSSRPRSKSRSGSPRQARE 300
           RSRSRSRSRSRSRTARRNRSKSAERRSVSRSVSRSRSPSPIKSSRPRSKSRSGSPRQARE
Sbjct: 241 RSRSRSRSRSRSRTARRNRSKSAERRSVSRSVSRSRSPSPIKSSRPRSKSRSGSPRQARE 300

Query: 301 GSE 304
           GSE
Sbjct: 301 GSE 303

[Close]

BLAST of CsaV3_5G000070 vs. NCBI nr
Match: XP_038907230.1 (serine/arginine-rich splicing factor SR34A [Benincasa hispida] >XP_038907231.1 serine/arginine-rich splicing factor SR34A [Benincasa hispida] >XP_038907232.1 serine/arginine-rich splicing factor SR34A [Benincasa hispida] >XP_038907233.1 serine/arginine-rich splicing factor SR34A [Benincasa hispida])

HSP 1 Score: 487.6 bits (1254), Expect = 7.5e-134
Identity = 272/305 (89.18%), Postives = 276/305 (90.49%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFE+VRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGWWWWWWWRRRRRRRRRRRR 120
           AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGG G                   
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGSG------------------- 120

Query: 121 RRRRRGGGGRGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG 180
                GGGG GGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG
Sbjct: 121 -----GGGGAGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG 180

Query: 181 TFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRS 240
           TFGIVDYTNYDDMKYA+RKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRS
Sbjct: 181 TFGIVDYTNYDDMKYAMRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRS 240

Query: 241 RSRSRSRSRSRSRT--ARRNRSKSAERRSVSRSVSRSRSPSPIKSSRPRSKSRSGSPRQA 300
           RSRSRSRSRSRSR+  ARRNRSKSAE RSVSRSVSRSRSPSP+KSSRPRSKSRSGSPRQA
Sbjct: 241 RSRSRSRSRSRSRSRPARRNRSKSAE-RSVSRSVSRSRSPSPVKSSRPRSKSRSGSPRQA 280

Query: 301 REGSE 304
           REGSE
Sbjct: 301 REGSE 280

[Close]

BLAST of CsaV3_5G000070 vs. NCBI nr
Match: XP_022137780.1 (serine/arginine-rich splicing factor SR34A [Momordica charantia] >XP_022137781.1 serine/arginine-rich splicing factor SR34A [Momordica charantia] >XP_022137782.1 serine/arginine-rich splicing factor SR34A [Momordica charantia] >XP_022137783.1 serine/arginine-rich splicing factor SR34A [Momordica charantia])

HSP 1 Score: 466.8 bits (1200), Expect = 1.4e-127
Identity = 262/303 (86.47%), Postives = 267/303 (88.12%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGWWWWWWWRRRRRRRRRRRR 120
           AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGG                   
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGG------------------G 120

Query: 121 RRRRRGGGGRGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG 180
                GGGG GGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD+EG
Sbjct: 121 GGGGGGGGGGGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDNEG 180

Query: 181 TFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRS 240
           TFGIVDYTNYDDMKYAIRKLDDTEF+NPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRS
Sbjct: 181 TFGIVDYTNYDDMKYAIRKLDDTEFKNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRS 240

Query: 241 RSRSRSRSRSRSRTARRNRSKSAERRSVSRSVSRSRSPSPIKSSRPRSKSRSGSPRQARE 300
           +SRSRS        ARRNRSKS E RSVSRSVSRSRSPSP+KSSRPRSKSRSGSPR+ RE
Sbjct: 241 QSRSRS--------ARRNRSKSVE-RSVSRSVSRSRSPSPVKSSRPRSKSRSGSPREGRE 276

Query: 301 GSE 304
           GSE
Sbjct: 301 GSE 276

[Close]

BLAST of CsaV3_5G000070 vs. NCBI nr
Match: XP_023533518.1 (serine/arginine-rich splicing factor SR34A-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 449.1 bits (1154), Expect = 3.0e-122
Identity = 251/302 (83.11%), Postives = 260/302 (86.09%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSRFSRTIYVGNLPSDI+E EIEDLFYKYGRILDIELKIPPRPPCYCFVEFE+VRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGWWWWWWWRRRRRRRRRRRR 120
           AIR RDGYNFDGCRLRVELAHGGRGPSSSD RS+YGG GG                    
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGG-------------------- 120

Query: 121 RRRRRGGGGRGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG 180
                GGGG GGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVS DSEG
Sbjct: 121 -----GGGGGGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEG 180

Query: 181 TFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRS 240
           TFG VDYTNYDDMKYAIRKLDDTEF+NPWARAYIRVKKY+GSPTR RSR+RSRSRSRSRS
Sbjct: 181 TFGTVDYTNYDDMKYAIRKLDDTEFKNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRS 240

Query: 241 RSRSRSRSRSRSRTARRNRSKSAERRSVSRSVSRSRSPSPIKSSRPRSKSRSGSPRQARE 300
           RSRSRSRS      ARRNRSKSAE +SVSRSVSRSRS SP+KSSR RSKSRSGSPR+ARE
Sbjct: 241 RSRSRSRS------ARRNRSKSAE-QSVSRSVSRSRSLSPVKSSRRRSKSRSGSPREARE 270

Query: 301 GS 303
           GS
Sbjct: 301 GS 270

[Close]

BLAST of CsaV3_5G000070 vs. NCBI nr
Match: XP_023533513.1 (serine/arginine-rich splicing factor SR34A-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023533515.1 serine/arginine-rich splicing factor SR34A-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023533516.1 serine/arginine-rich splicing factor SR34A-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023533517.1 serine/arginine-rich splicing factor SR34A-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 443.4 bits (1139), Expect = 1.6e-120
Identity = 251/306 (82.03%), Postives = 260/306 (84.97%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYK----YGRILDIELKIPPRPPCYCFVEFESVR 60
           MSSRFSRTIYVGNLPSDI+E EIEDLFYK    YGRILDIELKIPPRPPCYCFVEFE+VR
Sbjct: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKFLWQYGRILDIELKIPPRPPCYCFVEFENVR 60

Query: 61  DAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGWWWWWWWRRRRRRRR 120
           DAEDAIR RDGYNFDGCRLRVELAHGGRGPSSSD RS+YGG GG                
Sbjct: 61  DAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGG---------------- 120

Query: 121 RRRRRRRRRGGGGRGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSR 180
                    GGGG GGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVS 
Sbjct: 121 ---------GGGGGGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSH 180

Query: 181 DSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRS 240
           DSEGTFG VDYTNYDDMKYAIRKLDDTEF+NPWARAYIRVKKY+GSPTR RSR+RSRSRS
Sbjct: 181 DSEGTFGTVDYTNYDDMKYAIRKLDDTEFKNPWARAYIRVKKYEGSPTRGRSRNRSRSRS 240

Query: 241 RSRSRSRSRSRSRSRSRTARRNRSKSAERRSVSRSVSRSRSPSPIKSSRPRSKSRSGSPR 300
           RSRSRSRSRSRS      ARRNRSKSAE +SVSRSVSRSRS SP+KSSR RSKSRSGSPR
Sbjct: 241 RSRSRSRSRSRS------ARRNRSKSAE-QSVSRSVSRSRSLSPVKSSRRRSKSRSGSPR 274

Query: 301 QAREGS 303
           +AREGS
Sbjct: 301 EAREGS 274

[Close]

BLAST of CsaV3_5G000070 vs. ExPASy Swiss-Prot
Match: A2RVS6 (Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana OX=3702 GN=SR34A PE=2 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 6.3e-107
Identity = 222/322 (68.94%), Postives = 248/322 (77.02%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MS RFSR+IYVGNLP DI+E+EIED+FYKYGRI+DIELK+PPRPPCYCFVEFE  RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGWWWWWWWRRRRRRRRRRRR 120
           AI+ RDGYN DGCRLRVELAHGGRG SSSDRR  YGGGG G+                  
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGY------------------ 120

Query: 121 RRRRRGGGGRGGG--RFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 180
                GGGG GGG  RFGVS+ SE+RVIVRGLPSSASWQDLKDHMRKAGDVCFAEV+RDS
Sbjct: 121 -----GGGGGGGGSARFGVSRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDS 180

Query: 181 EGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRS 240
           +GT+G+VDYTNYDDMKYAIRKLDDTEFRNPWAR +IRVKKY+ S +RSRS SRSRSRSRS
Sbjct: 181 DGTYGVVDYTNYDDMKYAIRKLDDTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRS 240

Query: 241 RSRSRSRSRSRSRSRTARRNRS-----KSAERRSVSRSVSRSRSPSPIKS---------- 300
           RSRSR R RS SRSR+  R++S       + RRS+SRS+S+SRSPSP K           
Sbjct: 241 RSRSRGRGRSHSRSRSLSRSKSPRKDLSKSPRRSLSRSISKSRSPSPDKKKSPPRAMSRS 299

Query: 301 ---SRPRSKSRSGSPRQAREGS 303
              SR RS+S S SP + REGS
Sbjct: 301 KSRSRSRSRSPSKSPPKVREGS 299

[Close]

BLAST of CsaV3_5G000070 vs. ExPASy Swiss-Prot
Match: O22315 (Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana OX=3702 GN=SR34 PE=1 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 7.7e-81
Identity = 186/312 (59.62%), Postives = 222/312 (71.15%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSR SRT+YVGNLP DI+E E+EDLF KYG ++ I+LK+PPRPP Y FVEF+  RDAED
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGWWWWWWWRRRRRRRRRRRR 120
           AI  RDGY+FDG RLRVELAHGGR  SS D R S+ GGG G                   
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR-RSSDDTRGSFNGGGRG------------------- 120

Query: 121 RRRRRGGGGRG-GGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 180
                GG GRG GG  G S+RSE+RV+V GLPSSASWQDLKDHMRK GDVCF++V RD+ 
Sbjct: 121 -----GGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDAR 180

Query: 181 GTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVKKYDG-----SPTRSRSRSRSRS 240
           GT G+VDYT Y+DMKYA++KLDDTEFRN ++  Y+RV++YD      SP+R RS S+SRS
Sbjct: 181 GTTGVVDYTCYEDMKYALKKLDDTEFRNAFSNGYVRVREYDSRKDSRSPSRGRSYSKSRS 240

Query: 241 RSRSRSRSRSRSRSRSRSRTARRNRSKSAERRSVSRSV---SRSRSPSPIKSSRPRSKSR 300
           RSR RS SRSRSRSRSRSR+ +   S+ +  +S SRS    S+SRSPSP    R RS+SR
Sbjct: 241 RSRGRSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSRSPSP---RRSRSRSR 284

Query: 301 SGSPRQAREGSE 304
           S  P   +EGS+
Sbjct: 301 SPLPSVQKEGSK 284

[Close]

BLAST of CsaV3_5G000070 vs. ExPASy Swiss-Prot
Match: F4JHI7 (Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana OX=3702 GN=SR34B PE=2 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 2.2e-75
Identity = 180/296 (60.81%), Postives = 210/296 (70.95%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSR SRTIYVGNLP DI+E E+EDLF KYG ++ I+LKIPPRPP Y FVEFE  RDA+D
Sbjct: 1   MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGWWWWWWWRRRRRRRRRRRR 120
           AI  RDGY+FDG  LRVELAHGGR  SS D R SY G G G                   
Sbjct: 61  AIYGRDGYDFDGHHLRVELAHGGR-RSSHDARGSYSGRGRG------------------- 120

Query: 121 RRRRRGGGGRGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG 180
               RGGG  GG   G S+RSEYRV+V GLPSSASWQDLKDHMRK G+VCF++V RD  G
Sbjct: 121 ---GRGGGDGGGRERGPSRRSEYRVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRG 180

Query: 181 TFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRS 240
           T GIVDYT+Y+DMKYA   LDDTEFRN ++  Y+RV++YD   +R  SRS SR RS S+S
Sbjct: 181 TTGIVDYTSYEDMKYA---LDDTEFRNAFSHEYVRVREYD---SRRDSRSPSRGRSYSKS 240

Query: 241 RSRSRSRSRSRSRTARRNRSKSAERRSVSRSVSRSRSPSPIKSSRPRSKSRSGSPR 297
           RSR RS SRSRSR+  R++S+S + +S+ RS ++S S SP   SR RSKSRS SPR
Sbjct: 241 RSRGRSPSRSRSRSRSRSKSRSPKAKSLRRSPAKSTSRSP--RSRSRSKSRSLSPR 265

[Close]

BLAST of CsaV3_5G000070 vs. ExPASy Swiss-Prot
Match: Q9XFR5 (Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana OX=3702 GN=SR30 PE=1 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 2.4e-66
Identity = 169/300 (56.33%), Postives = 199/300 (66.33%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSR++RTIYVGNLP DI++ E+EDLFYKYG I+DI+LKIPPRPP Y FVEFE  RDA+D
Sbjct: 1   MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGR--GPSSSDRRSSYGGGGGGWWWWWWWRRRRRRRRRR 120
           AI  RDGY+FDGCRLRVE+AHGGR   PS     SSY                       
Sbjct: 61  AIYGRDGYDFDGCRLRVEIAHGGRRFSPSVDRYSSSYSASR------------------- 120

Query: 121 RRRRRRRGGGGRGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 180
                              S+RS+YRV+V GLP SASWQDLKDHMRKAGDVCF+EV  D 
Sbjct: 121 -----------------APSRRSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSEVFPDR 180

Query: 181 EGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRS-R 240
           +G  G+VDY+NYDDMKYAIRKLD TEFRN ++ AYIRV++Y+   +RS SRS   S+S R
Sbjct: 181 KGMSGVVDYSNYDDMKYAIRKLDATEFRNAFSSAYIRVREYE---SRSVSRSPDDSKSYR 240

Query: 241 SRSRSRSRSRS-RSRSRTARRNRSKSAERRSVSRSVSRSRSPSPIKS-SRPRSKSRSGSP 296
           SRSRSR  S S  S+SR+    RS S   R +SRS S   S S  +S S+ RS+SRS SP
Sbjct: 241 SRSRSRGPSCSYSSKSRSVSPARSISPRSRPLSRSRSLYSSVSRSQSRSKSRSRSRSNSP 261

[Close]

BLAST of CsaV3_5G000070 vs. ExPASy Swiss-Prot
Match: Q7SXP4 (Serine/arginine-rich splicing factor 1A OS=Danio rerio OX=7955 GN=srsf1a PE=2 SV=2)

HSP 1 Score: 210.3 bits (534), Expect = 3.0e-53
Identity = 151/272 (55.51%), Postives = 177/272 (65.07%), Query Frame = 0


Query: 9   IYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAEDAIRARDGY 68
           IYVGNLP DI+  ++ED+FYKYG I DI+LK     P + FVEFE  RDAEDA+ ARDGY
Sbjct: 17  IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGY 76

Query: 69  NFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGWWWWWWWRRRRRRRRRRRRRRRRRGGG 128
           ++DG RLRVE    GRG      R  +GGGGGG                        GGG
Sbjct: 77  DYDGYRLRVEFPRSGRGMG----RGGFGGGGGG---------------------GGGGGG 136

Query: 129 GRGG---GRFG-VSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGI 188
           G GG   GR+G  S+RSEYRVIV GLP S SWQDLKDHMR+AGDVC+A+V RD  GT G+
Sbjct: 137 GGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRD--GT-GV 196

Query: 189 VDYTNYDDMKYAIRKLDDTEFR-NPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSR 248
           V++   +DM YA+RKLD+T+FR +    AYIRV K DG   RS S  RSRSRSRSRSRSR
Sbjct: 197 VEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV-KVDG--PRSPSYGRSRSRSRSRSRSR 256

Query: 249 SRSRSRSRSRTARRNRSKSAERRSVSRSVSRS 276
           SRS +RSRS + RR+R         SRS SRS
Sbjct: 257 SRSNNRSRSYSPRRSRGSPQYSPRHSRSRSRS 257

[Close]

BLAST of CsaV3_5G000070 vs. ExPASy TrEMBL
Match: A0A0A0KLR9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G138510 PE=4 SV=1)

HSP 1 Score: 479.6 bits (1233), Expect = 9.9e-132
Identity = 272/303 (89.77%), Postives = 272/303 (89.77%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGWWWWWWWRRRRRRRRRRRR 120
           AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGG                   
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGG---------------GGGG 120

Query: 121 RRRRRGGGGRGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG 180
                GGGG GGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG
Sbjct: 121 GGGGGGGGGGGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG 180

Query: 181 TFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRS 240
           TFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVKKYDGSPT      RSRSRSRSRS
Sbjct: 181 TFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVKKYDGSPT------RSRSRSRSRS 240

Query: 241 RSRSRSRSRSRSRTARRNRSKSAERRSVSRSVSRSRSPSPIKSSRPRSKSRSGSPRQARE 300
           RSRSRSRSRSRSRTARRNRSKSAERRSVSRSVSRSRSPSPIKSSRPRSKSRSGSPRQARE
Sbjct: 241 RSRSRSRSRSRSRTARRNRSKSAERRSVSRSVSRSRSPSPIKSSRPRSKSRSGSPRQARE 282

Query: 301 GSE 304
           GSE
Sbjct: 301 GSE 282

[Close]

BLAST of CsaV3_5G000070 vs. ExPASy TrEMBL
Match: A0A6J1C7M8 (serine/arginine-rich splicing factor SR34A OS=Momordica charantia OX=3673 GN=LOC111009138 PE=4 SV=1)

HSP 1 Score: 466.8 bits (1200), Expect = 6.7e-128
Identity = 262/303 (86.47%), Postives = 267/303 (88.12%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGWWWWWWWRRRRRRRRRRRR 120
           AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGG                   
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGG------------------G 120

Query: 121 RRRRRGGGGRGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG 180
                GGGG GGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD+EG
Sbjct: 121 GGGGGGGGGGGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDNEG 180

Query: 181 TFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRS 240
           TFGIVDYTNYDDMKYAIRKLDDTEF+NPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRS
Sbjct: 181 TFGIVDYTNYDDMKYAIRKLDDTEFKNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRS 240

Query: 241 RSRSRSRSRSRSRTARRNRSKSAERRSVSRSVSRSRSPSPIKSSRPRSKSRSGSPRQARE 300
           +SRSRS        ARRNRSKS E RSVSRSVSRSRSPSP+KSSRPRSKSRSGSPR+ RE
Sbjct: 241 QSRSRS--------ARRNRSKSVE-RSVSRSVSRSRSPSPVKSSRPRSKSRSGSPREGRE 276

Query: 301 GSE 304
           GSE
Sbjct: 301 GSE 276

[Close]

BLAST of CsaV3_5G000070 vs. ExPASy TrEMBL
Match: A0A6J1K1U7 (serine/arginine-rich splicing factor SR34A-like OS=Cucurbita maxima OX=3661 GN=LOC111491646 PE=4 SV=1)

HSP 1 Score: 442.6 bits (1137), Expect = 1.3e-120
Identity = 248/302 (82.12%), Postives = 258/302 (85.43%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSRFSRTIYVGNLPSDI+E EIEDLFYKYGRILDIELKIPPRPPCYCFVEFE+VRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIRENEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGWWWWWWWRRRRRRRRRRRR 120
           AIR RDGYNFDGCRLRVELAHGGRGPSSSD RS+YGG GG                    
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSDHRSNYGGSGG-------------------- 120

Query: 121 RRRRRGGGGRGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG 180
                     GGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVS DSEG
Sbjct: 121 ----------GGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSHDSEG 180

Query: 181 TFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRS 240
           TFG VDYTNYDDMKYAIRKLDDTEF+NPWARAYIRVKKY+GSPTR RSR+RSRSRSRSRS
Sbjct: 181 TFGTVDYTNYDDMKYAIRKLDDTEFKNPWARAYIRVKKYEGSPTRGRSRNRSRSRSRSRS 240

Query: 241 RSRSRSRSRSRSRTARRNRSKSAERRSVSRSVSRSRSPSPIKSSRPRSKSRSGSPRQARE 300
           RSRSRSRSRS    A+RNRSKSAE +SVSRSVSRSRS SP+KSSR RSKSRSGSPR+ARE
Sbjct: 241 RSRSRSRSRS----AKRNRSKSAE-QSVSRSVSRSRSLSPVKSSRRRSKSRSGSPREARE 267

Query: 301 GS 303
           GS
Sbjct: 301 GS 267

[Close]

BLAST of CsaV3_5G000070 vs. ExPASy TrEMBL
Match: A0A6J1IB38 (serine/arginine-rich splicing factor SR34A-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111472973 PE=4 SV=1)

HSP 1 Score: 441.0 bits (1133), Expect = 3.9e-120
Identity = 248/306 (81.05%), Postives = 255/306 (83.33%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSRFSRTIYVGNLPSDIKEYEIEDLF+KYGRILDIELKIPPRPPCYCFVEFE+VRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFHKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGWWWWWWWRRRRRRRRRRRR 120
           AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGG                   
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGG------------------- 120

Query: 121 RRRRRGGGGRGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG 180
                GGGG GGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG
Sbjct: 121 -----GGGGGGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG 180

Query: 181 TFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRS-------- 240
           TFG+VDYTNYDDMKYAIRKLDDTEFRNPWAR YIRVKKYDGSPTRSRSRSRS        
Sbjct: 181 TFGVVDYTNYDDMKYAIRKLDDTEFRNPWARGYIRVKKYDGSPTRSRSRSRSRSSRSRSR 240

Query: 241 ---------------RSRSRSRSRSRSRSRSRSRSRTARRNRSKSAERRSVSRSVSRSRS 284
                          RSRSR+RS+SRSRSRSRSRSR+AR NRSKSAE RSVSRSVSRSRS
Sbjct: 241 SRSRSRSRSRSRGRDRSRSRNRSQSRSRSRSRSRSRSARPNRSKSAE-RSVSRSVSRSRS 281

[Close]

BLAST of CsaV3_5G000070 vs. ExPASy TrEMBL
Match: A0A6J1IFY5 (serine/arginine-rich splicing factor SR34A-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111472973 PE=4 SV=1)

HSP 1 Score: 438.7 bits (1127), Expect = 1.9e-119
Identity = 247/306 (80.72%), Postives = 254/306 (83.01%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSRFSRTIYVGNLPSDIKEYEIEDLF+KYGRILDIELKIPPRPPCYCFVEFE+VRDAED
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFHKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGWWWWWWWRRRRRRRRRRRR 120
           AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGG                    
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGG-------------------- 120

Query: 121 RRRRRGGGGRGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG 180
                GGGG GGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG
Sbjct: 121 -----GGGGGGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG 180

Query: 181 TFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRS-------- 240
           TFG+VDYTNYDDMKYAIRKLDDTEFRNPWAR YIRVKKYDGSPTRSRSRSRS        
Sbjct: 181 TFGVVDYTNYDDMKYAIRKLDDTEFRNPWARGYIRVKKYDGSPTRSRSRSRSRSSRSRSR 240

Query: 241 ---------------RSRSRSRSRSRSRSRSRSRSRTARRNRSKSAERRSVSRSVSRSRS 284
                          RSRSR+RS+SRSRSRSRSRSR+AR NRSKSAE RSVSRSVSRSRS
Sbjct: 241 SRSRSRSRSRSRGRDRSRSRNRSQSRSRSRSRSRSRSARPNRSKSAE-RSVSRSVSRSRS 280

[Close]

BLAST of CsaV3_5G000070 vs. TAIR 10
Match: AT3G49430.1 (SER/ARG-rich protein 34A )

HSP 1 Score: 388.7 bits (997), Expect = 4.4e-108
Identity = 222/322 (68.94%), Postives = 248/322 (77.02%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MS RFSR+IYVGNLP DI+E+EIED+FYKYGRI+DIELK+PPRPPCYCFVEFE  RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGWWWWWWWRRRRRRRRRRRR 120
           AI+ RDGYN DGCRLRVELAHGGRG SSSDRR  YGGGG G+                  
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGY------------------ 120

Query: 121 RRRRRGGGGRGGG--RFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 180
                GGGG GGG  RFGVS+ SE+RVIVRGLPSSASWQDLKDHMRKAGDVCFAEV+RDS
Sbjct: 121 -----GGGGGGGGSARFGVSRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDS 180

Query: 181 EGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRS 240
           +GT+G+VDYTNYDDMKYAIRKLDDTEFRNPWAR +IRVKKY+ S +RSRS SRSRSRSRS
Sbjct: 181 DGTYGVVDYTNYDDMKYAIRKLDDTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRS 240

Query: 241 RSRSRSRSRSRSRSRTARRNRS-----KSAERRSVSRSVSRSRSPSPIKS---------- 300
           RSRSR R RS SRSR+  R++S       + RRS+SRS+S+SRSPSP K           
Sbjct: 241 RSRSRGRGRSHSRSRSLSRSKSPRKDLSKSPRRSLSRSISKSRSPSPDKKKSPPRAMSRS 299

Query: 301 ---SRPRSKSRSGSPRQAREGS 303
              SR RS+S S SP + REGS
Sbjct: 301 KSRSRSRSRSPSKSPPKVREGS 299

[Close]

BLAST of CsaV3_5G000070 vs. TAIR 10
Match: AT3G49430.3 (SER/ARG-rich protein 34A )

HSP 1 Score: 388.7 bits (997), Expect = 4.4e-108
Identity = 222/322 (68.94%), Postives = 248/322 (77.02%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MS RFSR+IYVGNLP DI+E+EIED+FYKYGRI+DIELK+PPRPPCYCFVEFE  RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGWWWWWWWRRRRRRRRRRRR 120
           AI+ RDGYN DGCRLRVELAHGGRG SSSDRR  YGGGG G+                  
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGY------------------ 120

Query: 121 RRRRRGGGGRGGG--RFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 180
                GGGG GGG  RFGVS+ SE+RVIVRGLPSSASWQDLKDHMRKAGDVCFAEV+RDS
Sbjct: 121 -----GGGGGGGGSARFGVSRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDS 180

Query: 181 EGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRS 240
           +GT+G+VDYTNYDDMKYAIRKLDDTEFRNPWAR +IRVKKY+ S +RSRS SRSRSRSRS
Sbjct: 181 DGTYGVVDYTNYDDMKYAIRKLDDTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRS 240

Query: 241 RSRSRSRSRSRSRSRTARRNRS-----KSAERRSVSRSVSRSRSPSPIKS---------- 300
           RSRSR R RS SRSR+  R++S       + RRS+SRS+S+SRSPSP K           
Sbjct: 241 RSRSRGRGRSHSRSRSLSRSKSPRKDLSKSPRRSLSRSISKSRSPSPDKKKSPPRAMSRS 299

Query: 301 ---SRPRSKSRSGSPRQAREGS 303
              SR RS+S S SP + REGS
Sbjct: 301 KSRSRSRSRSPSKSPPKVREGS 299

[Close]

BLAST of CsaV3_5G000070 vs. TAIR 10
Match: AT3G49430.2 (SER/ARG-rich protein 34A )

HSP 1 Score: 384.0 bits (985), Expect = 1.1e-106
Identity = 211/293 (72.01%), Postives = 235/293 (80.20%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MS RFSR+IYVGNLP DI+E+EIED+FYKYGRI+DIELK+PPRPPCYCFVEFE  RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGWWWWWWWRRRRRRRRRRRR 120
           AI+ RDGYN DGCRLRVELAHGGRG SSSDRR  YGGGG G+                  
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGY------------------ 120

Query: 121 RRRRRGGGGRGGG--RFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 180
                GGGG GGG  RFGVS+ SE+RVIVRGLPSSASWQDLKDHMRKAGDVCFAEV+RDS
Sbjct: 121 -----GGGGGGGGSARFGVSRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDS 180

Query: 181 EGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRS 240
           +GT+G+VDYTNYDDMKYAIRKLDDTEFRNPWAR +IRVKKY+ S +RSRS SRSRSRSRS
Sbjct: 181 DGTYGVVDYTNYDDMKYAIRKLDDTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRS 240

Query: 241 RSRSRSRSRSRSRSRTARRNRS-----KSAERRSVSRSVSRSRSPSPIKSSRP 287
           RSRSR R RS SRSR+  R++S       + RRS+SRS+S+SRSPSP K   P
Sbjct: 241 RSRSRGRGRSHSRSRSLSRSKSPRKDLSKSPRRSLSRSISKSRSPSPDKKKSP 270

[Close]

BLAST of CsaV3_5G000070 vs. TAIR 10
Match: AT1G02840.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 302.0 bits (772), Expect = 5.5e-82
Identity = 186/312 (59.62%), Postives = 222/312 (71.15%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSR SRT+YVGNLP DI+E E+EDLF KYG ++ I+LK+PPRPP Y FVEF+  RDAED
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGWWWWWWWRRRRRRRRRRRR 120
           AI  RDGY+FDG RLRVELAHGGR  SS D R S+ GGG G                   
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR-RSSDDTRGSFNGGGRG------------------- 120

Query: 121 RRRRRGGGGRG-GGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 180
                GG GRG GG  G S+RSE+RV+V GLPSSASWQDLKDHMRK GDVCF++V RD+ 
Sbjct: 121 -----GGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDAR 180

Query: 181 GTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVKKYDG-----SPTRSRSRSRSRS 240
           GT G+VDYT Y+DMKYA++KLDDTEFRN ++  Y+RV++YD      SP+R RS S+SRS
Sbjct: 181 GTTGVVDYTCYEDMKYALKKLDDTEFRNAFSNGYVRVREYDSRKDSRSPSRGRSYSKSRS 240

Query: 241 RSRSRSRSRSRSRSRSRSRTARRNRSKSAERRSVSRSV---SRSRSPSPIKSSRPRSKSR 300
           RSR RS SRSRSRSRSRSR+ +   S+ +  +S SRS    S+SRSPSP    R RS+SR
Sbjct: 241 RSRGRSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSRSPSP---RRSRSRSR 284

Query: 301 SGSPRQAREGSE 304
           S  P   +EGS+
Sbjct: 301 SPLPSVQKEGSK 284

[Close]

BLAST of CsaV3_5G000070 vs. TAIR 10
Match: AT1G02840.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 302.0 bits (772), Expect = 5.5e-82
Identity = 186/312 (59.62%), Postives = 222/312 (71.15%), Query Frame = 0


Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSR SRT+YVGNLP DI+E E+EDLF KYG ++ I+LK+PPRPP Y FVEF+  RDAED
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGWWWWWWWRRRRRRRRRRRR 120
           AI  RDGY+FDG RLRVELAHGGR  SS D R S+ GGG G                   
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR-RSSDDTRGSFNGGGRG------------------- 120

Query: 121 RRRRRGGGGRG-GGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 180
                GG GRG GG  G S+RSE+RV+V GLPSSASWQDLKDHMRK GDVCF++V RD+ 
Sbjct: 121 -----GGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDAR 180

Query: 181 GTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVKKYDG-----SPTRSRSRSRSRS 240
           GT G+VDYT Y+DMKYA++KLDDTEFRN ++  Y+RV++YD      SP+R RS S+SRS
Sbjct: 181 GTTGVVDYTCYEDMKYALKKLDDTEFRNAFSNGYVRVREYDSRKDSRSPSRGRSYSKSRS 240

Query: 241 RSRSRSRSRSRSRSRSRSRTARRNRSKSAERRSVSRSV---SRSRSPSPIKSSRPRSKSR 300
           RSR RS SRSRSRSRSRSR+ +   S+ +  +S SRS    S+SRSPSP    R RS+SR
Sbjct: 241 RSRGRSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSRSPSP---RRSRSRSR 284

Query: 301 SGSPRQAREGSE 304
           S  P   +EGS+
Sbjct: 301 SPLPSVQKEGSK 284

The following BLAST results are available for this feature:

BLAST of CsaV3_5G000070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011654574.2	4.9e-157	100.00	serine/arginine-rich splicing factor SR34A [Cucumis sativus] >XP_011654575.2 ser...	[more]
XP_038907230.1	7.5e-134	89.18	serine/arginine-rich splicing factor SR34A [Benincasa hispida] >XP_038907231.1 s...	[more]
XP_022137780.1	1.4e-127	86.47	serine/arginine-rich splicing factor SR34A [Momordica charantia] >XP_022137781.1...	[more]
XP_023533518.1	3.0e-122	83.11	serine/arginine-rich splicing factor SR34A-like isoform X2 [Cucurbita pepo subsp...	[more]
XP_023533513.1	1.6e-120	82.03	serine/arginine-rich splicing factor SR34A-like isoform X1 [Cucurbita pepo subsp...	[more]

BLAST of CsaV3_5G000070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2RVS6	6.3e-107	68.94	Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
O22315	7.7e-81	59.62	Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana OX=3702 GN=SR3...	[more]
F4JHI7	2.2e-75	60.81	Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
Q9XFR5	2.4e-66	56.33	Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana OX=3702 GN=SR3...	[more]
Q7SXP4	3.0e-53	55.51	Serine/arginine-rich splicing factor 1A OS=Danio rerio OX=7955 GN=srsf1a PE=2 SV...	[more]

BLAST of CsaV3_5G000070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLR9	9.9e-132	89.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G138510 PE=4 SV=1	[more]
A0A6J1C7M8	6.7e-128	86.47	serine/arginine-rich splicing factor SR34A OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1K1U7	1.3e-120	82.12	serine/arginine-rich splicing factor SR34A-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1IB38	3.9e-120	81.05	serine/arginine-rich splicing factor SR34A-like isoform X2 OS=Cucurbita maxima O...	[more]
A0A6J1IFY5	1.9e-119	80.72	serine/arginine-rich splicing factor SR34A-like isoform X3 OS=Cucurbita maxima O...	[more]

BLAST of CsaV3_5G000070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49430.1	4.4e-108	68.94	SER/ARG-rich protein 34A	[more]
AT3G49430.3	4.4e-108	68.94	SER/ARG-rich protein 34A	[more]
AT3G49430.2	1.1e-106	72.01	SER/ARG-rich protein 34A	[more]
AT1G02840.1	5.5e-82	59.62	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G02840.3	5.5e-82	59.62	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 144..213 e-value: 1.3E-7 score: 41.3 coord: 8..78 e-value: 3.1E-22 score: 89.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 9..76 e-value: 2.7E-18 score: 65.5 coord: 145..207 e-value: 4.1E-12 score: 45.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 7..82 score: 16.568354
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 143..221 score: 10.20669
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..90 e-value: 3.8E-24 score: 86.8
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 142..220 e-value: 6.8E-24 score: 85.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 228..260
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 272..292
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 219..303
None	No IPR available	PANTHER	PTHR23147:SF63	SERINE/ARGININE-RICH SPLICING FACTOR SR34A	coord: 2..302
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 2..302
None	No IPR available	CDD	cd12602	RRM2_SF2_plant_like	coord: 143..218 e-value: 1.96171E-43 score: 141.49
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 6..213

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G000070.1	CsaV3_5G000070.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding