CsaV3_4G037790 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.TCATCGCTTACCTCACATGGTTATGATTATCACATTTCATTTATCGTAAATTAAAATTGTTTGTTGGAGCAACACAATATAATCCCAAGGCCTCTCACTCTCATTCCCCCAAACGTATACTACCCTGACACCTCTCCTCCTTCCACTTCTATTATCCCTCCTCGTCATATCCCCAAATTAATTAAATTTCCCTGGAAAACGCCGATCGAGACAATCGGTCCTGATGGGCGGGTGTTTCTCAAACTGCCTAATTATTCCCAAAGTCTCTTCGTCTGTTCCTCCACCTCCTCCTCCTACCGCCAAAGTTATCTCTTTACAAGGACATCTCCGGGAATACCCTGTTCCTATATCCGTCTCCCGCGTTCTTCAGACCGAAAATTCATCTTCTTCCACTTCCGACTCTTTTCTATGCAACTCCGACCGCTTATTCTACGATGATTTCATTCCGTCTTTGCCTCTCGACCACCAGCTCCACCCCAATCAGATCTATTTCATCCTTCCTTCCTCCAACCTCCACCACCGATTGACCGCCCCTGATATGGCCGCCTTAGCCGTCAAAGCCACCCTCGCCCTCCAGAATGCCTCCACCAACAACCTCCATCTCCCTCATAACAAGGGTCGTCGTCGTCGTATTTCTCCCCTCTTTGATCTTGATAGCCCCAACGACCAACAAAACGAACACGAACACGAACATGCCCTCTCCACTAACTCTAACTCCAAGAACAACACCACCTCCTCCTCCGTTAAAAAATTGCAGAGATTGACATCCAGAAGGGCAAAAATGGCAGTTCGTTCCTTTAAACTCAGGTTGAGCACCATCTACGAAGGCACCGTTCTGTAATCGTATGGATTAGGGATTACTTCACCCACCGGTTTGCACGAAGAGAGTTTTGGTAAACAATTCAATTCAATTCAATTCATGGTCCATATGATTCCAACTTCCAATTGATCACATTGGGACCTGCTTTATGTGCGTTCGGATATACACATAACATACGCAGGGCCGGATCTATTCAGGGTTCGAGGCACGTTGGTTCTACATTTGTATATATTACTGTTTATATTATATACATCCATCAAATAACATACATGGAATGAACACGGTTGAAGTTCTTTTCATATAACCAGTCGAATTCTTTTTGCCTTTTCTTTTGATTAAACTAATTAAATATGCAAACCAGAATAGTATTGATTAGTAGGGGAGAGTGGAGCCCATTAAAAGTTCAAAATACAATGTGAATGTGGCGAAGAAGAATGATTCAGAGTTTGAAGATTGAAGTGGGCGCAGCCAAAGTTGATGGACTTCGAAGACCATGGCATCTGCCCATGCCACCTTGTTTACCAGAACACCACACAATATCTCTTCTTTCTTCTCTTTTCTGTTCCGTTTGGGTCCAACCCGTTTCCAATTCCTAATTGCATCTGTGTAATCTTTCAGACAATTACTAAATATTATCATTTCTGTTTCTTTTTTACGCGGAAAATGCAAATAATGTACTAATCCTTATAATTTTGCAGCCCATTGATAATTATAACTATCAAAATGAGTATATCAGATGCTTTTTTTCTTTTGGATCGTATGCATGTGGTTGTCTTACGAGGTTGGAAAATAACCAAAAAGACCCTTTGTAATATTGAGATAACATTGGACTGTCTTATTTTAGTGATACTACGAATACACGGTTCACTTTGTAATTGTTACAAGAGTTGTAAAACGTTAGGGATGATGTGATCTTAATGGTTCGTGTGGAGACATGCGAGTGAGGTATAAAATTGGACCATATATAAAATGTCTAACTTTCTTTTACAACACCGTCAATCTCTTGATTGATTGAAGAATTAATGTTTCGATAGGATAATCATGTGTGACTCGATTTTAATTCTAAGTGAGTTGCAAACTTCTATCCATGAAGGTAATTTTTTAGATGATAGTGGTCATATCATCGACAAAGTAAGCCTACCATTTTAAGGA ATGGGCGGGTGTTTCTCAAACTGCCTAATTATTCCCAAAGTCTCTTCGTCTGTTCCTCCACCTCCTCCTCCTACCGCCAAAGTTATCTCTTTACAAGGACATCTCCGGGAATACCCTGTTCCTATATCCGTCTCCCGCGTTCTTCAGACCGAAAATTCATCTTCTTCCACTTCCGACTCTTTTCTATGCAACTCCGACCGCTTATTCTACGATGATTTCATTCCGTCTTTGCCTCTCGACCACCAGCTCCACCCCAATCAGATCTATTTCATCCTTCCTTCCTCCAACCTCCACCACCGATTGACCGCCCCTGATATGGCCGCCTTAGCCGTCAAAGCCACCCTCGCCCTCCAGAATGCCTCCACCAACAACCTCCATCTCCCTCATAACAAGGGTCGTCGTCGTCGTATTTCTCCCCTCTTTGATCTTGATAGCCCCAACGACCAACAAAACGAACACGAACACGAACATGCCCTCTCCACTAACTCTAACTCCAAGAACAACACCACCTCCTCCTCCGTTAAAAAATTGCAGAGATTGACATCCAGAAGGGCAAAAATGGCAGTTCGTTCCTTTAAACTCAGGTTGAGCACCATCTACGAAGGCACCGTTCTGTAA ATGGGCGGGTGTTTCTCAAACTGCCTAATTATTCCCAAAGTCTCTTCGTCTGTTCCTCCACCTCCTCCTCCTACCGCCAAAGTTATCTCTTTACAAGGACATCTCCGGGAATACCCTGTTCCTATATCCGTCTCCCGCGTTCTTCAGACCGAAAATTCATCTTCTTCCACTTCCGACTCTTTTCTATGCAACTCCGACCGCTTATTCTACGATGATTTCATTCCGTCTTTGCCTCTCGACCACCAGCTCCACCCCAATCAGATCTATTTCATCCTTCCTTCCTCCAACCTCCACCACCGATTGACCGCCCCTGATATGGCCGCCTTAGCCGTCAAAGCCACCCTCGCCCTCCAGAATGCCTCCACCAACAACCTCCATCTCCCTCATAACAAGGGTCGTCGTCGTCGTATTTCTCCCCTCTTTGATCTTGATAGCCCCAACGACCAACAAAACGAACACGAACACGAACATGCCCTCTCCACTAACTCTAACTCCAAGAACAACACCACCTCCTCCTCCGTTAAAAAATTGCAGAGATTGACATCCAGAAGGGCAAAAATGGCAGTTCGTTCCTTTAAACTCAGGTTGAGCACCATCTACGAAGGCACCGTTCTGTAA MGGCFSNCLIIPKVSSSVPPPPPPTAKVISLQGHLREYPVPISVSRVLQTENSSSSTSDSFLCNSDRLFYDDFIPSLPLDHQLHPNQIYFILPSSNLHHRLTAPDMAALAVKATLALQNASTNNLHLPHNKGRRRRISPLFDLDSPNDQQNEHEHEHALSTNSNSKNNTTSSSVKKLQRLTSRRAKMAVRSFKLRLSTIYEGTVL* Homology
BLAST of CsaV3_4G037790 vs. NCBI nr
Match: XP_011654294.1 (uncharacterized protein LOC101220453 [Cucumis sativus] >KGN55556.1 hypothetical protein Csa_012182 [Cucumis sativus]) HSP 1 Score: 396.7 bits (1018), Expect = 1.2e-106 Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0
BLAST of CsaV3_4G037790 vs. NCBI nr
Match: XP_008453039.1 (PREDICTED: uncharacterized protein LOC103493864 [Cucumis melo]) HSP 1 Score: 368.2 bits (944), Expect = 4.5e-98 Identity = 196/209 (93.78%), Postives = 200/209 (95.69%), Query Frame = 0
BLAST of CsaV3_4G037790 vs. NCBI nr
Match: KAA0064682.1 (DUF4228 domain-containing protein [Cucumis melo var. makuwa] >TYK19908.1 DUF4228 domain-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 306.6 bits (784), Expect = 1.6e-79 Identity = 165/177 (93.22%), Postives = 169/177 (95.48%), Query Frame = 0
BLAST of CsaV3_4G037790 vs. NCBI nr
Match: XP_038896630.1 (uncharacterized protein LOC120084892 [Benincasa hispida]) HSP 1 Score: 261.2 bits (666), Expect = 7.8e-66 Identity = 154/208 (74.04%), Postives = 166/208 (79.81%), Query Frame = 0
BLAST of CsaV3_4G037790 vs. NCBI nr
Match: XP_022981858.1 (uncharacterized protein LOC111480876 [Cucurbita maxima] >XP_023525127.1 uncharacterized protein LOC111788827 [Cucurbita pepo subsp. pepo] >KAG6608670.1 hypothetical protein SDJN03_02012, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037985.1 hypothetical protein SDJN02_01618, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 244.2 bits (622), Expect = 9.8e-61 Identity = 142/209 (67.94%), Postives = 161/209 (77.03%), Query Frame = 0
BLAST of CsaV3_4G037790 vs. ExPASy TrEMBL
Match: A0A0A0L5Z9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G665120 PE=4 SV=1) HSP 1 Score: 396.7 bits (1018), Expect = 5.7e-107 Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0
BLAST of CsaV3_4G037790 vs. ExPASy TrEMBL
Match: A0A1S3BUP5 (uncharacterized protein LOC103493864 OS=Cucumis melo OX=3656 GN=LOC103493864 PE=4 SV=1) HSP 1 Score: 368.2 bits (944), Expect = 2.2e-98 Identity = 196/209 (93.78%), Postives = 200/209 (95.69%), Query Frame = 0
BLAST of CsaV3_4G037790 vs. ExPASy TrEMBL
Match: A0A5D3D8Q9 (DUF4228 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00200 PE=4 SV=1) HSP 1 Score: 306.6 bits (784), Expect = 7.8e-80 Identity = 165/177 (93.22%), Postives = 169/177 (95.48%), Query Frame = 0
BLAST of CsaV3_4G037790 vs. ExPASy TrEMBL
Match: A0A6J1J381 (uncharacterized protein LOC111480876 OS=Cucurbita maxima OX=3661 GN=LOC111480876 PE=4 SV=1) HSP 1 Score: 244.2 bits (622), Expect = 4.8e-61 Identity = 142/209 (67.94%), Postives = 161/209 (77.03%), Query Frame = 0
BLAST of CsaV3_4G037790 vs. ExPASy TrEMBL
Match: A0A6J1FIQ7 (uncharacterized protein LOC111446101 OS=Cucurbita moschata OX=3662 GN=LOC111446101 PE=4 SV=1) HSP 1 Score: 243.0 bits (619), Expect = 1.1e-60 Identity = 141/209 (67.46%), Postives = 161/209 (77.03%), Query Frame = 0
BLAST of CsaV3_4G037790 vs. TAIR 10
Match: AT1G76600.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21010.1); Has 220 Blast hits to 220 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 220; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 143.7 bits (361), Expect = 1.7e-34 Identity = 94/200 (47.00%), Postives = 128/200 (64.00%), Query Frame = 0
BLAST of CsaV3_4G037790 vs. TAIR 10
Match: AT1G21010.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76600.1); Has 206 Blast hits to 206 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 136.3 bits (342), Expect = 2.7e-32 Identity = 87/199 (43.72%), Postives = 123/199 (61.81%), Query Frame = 0
BLAST of CsaV3_4G037790 vs. TAIR 10
Match: AT3G50800.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66580.1); Has 249 Blast hits to 249 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 249; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 72.4 bits (176), Expect = 4.8e-13 Identity = 41/101 (40.59%), Postives = 61/101 (60.40%), Query Frame = 0
BLAST of CsaV3_4G037790 vs. TAIR 10
Match: AT5G66580.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50800.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 70.1 bits (170), Expect = 2.4e-12 Identity = 39/93 (41.94%), Postives = 60/93 (64.52%), Query Frame = 0
BLAST of CsaV3_4G037790 vs. TAIR 10
Match: AT2G23690.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37240.1); Has 243 Blast hits to 243 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 241; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). ) HSP 1 Score: 68.9 bits (167), Expect = 5.3e-12 Identity = 46/127 (36.22%), Postives = 68/127 (53.54%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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