CsaV3_4G037740 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G037740
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	chr4: 26342869 .. 26346713 (+)
RNA-Seq Expression	CsaV3_4G037740
Synteny	CsaV3_4G037740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTTTCTCCAGTTATTTGGCTGGGAACAAGCACCAAACCTTGATTGTCGGAATGGCGGATGTGAAGGGATTGTTGGAGGTGTCATCCACCAAATAGGTATTTGCAATTGAGTCGGGTTTAATTGTAATTGAACAAGATGTTTTTGAATATCGTTAGAATTATAGGAGTAAATATCAGGAGACTCTTATCTCTTCAAGTTGGAACTACTTCGGTGAGAACATGCAGTAGATGAGCACTTCTCTGACAACACATTCAGGTGAAGGAAGTTTGTAAACTAACTTTCTACTATTATGATGAAAGTCCCATACACAAATATGGATATAGCCAAACGTCTAGCCAACTCATAACAGAATGAGGAAGCTAACTATGACCAAGTAAAACAAACTAACAACATGTAGTTAATAAAAGTAAGACTTTTGTTATTTCTTTTTAATATTTGTGAATTCTAAACCCAACATCACAAATCTTGACTCTTCTCATAGAACAACCGTCTGACTCTACTATACTTGGGTTCTATTGGCTACAGTGAAATATTTGCTAATTGCTACTATAATTCTTCTTCTAGTTAACTTATCATGAATGTTCCAATTCAAAATTTGGATACCTGTTTAATTTTTTAAGTTTCATTGTAGAATTGGGTCAGTAGTATTCTTAAATATTTATTTCATTTGGTTTCATTTGATTGTCTAGCATCTTTCATGTTCTGCAAACTTTCTTCATTCTTGAAATTGAGTACATGGCTATTATCTTTTGATCGTAGTAATTTACATTGTATTGGATGTGGTATTATAAATTATTATTTTTCCAACTATGAATGTTTAACGGCGTAAACAAATAGTACATTTTAATCCAATTGGGTTGTGTTGTAAATACTATTCTATTGGTGAATAATTGCAGCTCGTGGTATGGAGAAGAGCGTCCTCGGTGGCTTGGTCCACTACCATATGATTATCCAAAATATCTGACAGGTGAACTGCCTGGTGATTATGGATTTGATATTGCAGGTTTGAGTGAGGATCCTGTGGCTTTCCAGAAATTCTTCAAGTATATTGAGCTTCTTTAGCCTGAATTTTTTTCTCAGCAGTTCCTTTTTTCCCCAATATCTGGAATCATATGTAGATGCAATAGTGCATATCATAAGAGAGTGATTATTTTGACTTGTGAATTGGCTGGTCAACAAAGTGATGACATAGTGATGATTAGGCAGATAAGCTGTGAGAGTAACAAAATGATTCTGCACAATATAATATAGACATCACCTGAAAATGATCCCTGAATAAATATCCACATATTTGTTAGCTATGATACAAAACTCGCATTCTGCACAGCTTGCTATCCAATTTTGACGATATTTGAGCTATTCCATATGCAATATAACTTTGCAGTCCTAATTATCTCCAATAATAGCAACTCTTGTTGAATGTATCTATTTCTTTTAATTGTTTTTTTCTTTTTGAATTTTTCATCAATAATTGATCTGTTTACTCAATCTTACTTCAGCTTTGAAATATTGCATGCTCGTTGGGCTATGTTAGCATCCCTAGGTGCTTTAGTTCCAGAGATCTTGGATATTTTTGGAGCTTTTCATTTCACTGAACCCATCTGGTGGCGAGTGGGCTATTCAAAACTTAAGGTTTGTTTTCTAGCACTTGGTCAACCATTTTTTTGGAGATTTATTTCATAAATTCTTGATCGTATGTTTGCTTGTTTTGTTTCCATGTTTTTACCCTTTTGTCTGGTTATATTTCCACTGCTATCAAATTGTTGTTTTGCTCTTGTTGAATCATGTTTTATTTCAAAGTCTAGTTTTGTCTGCCTTTATTAATGAAATGAAATAATAACGATTATGGCTTCATATATTTCAGAGCCGTGGTAAGCTTGAGTTGCTGCTGCCTTACTTCTATTTCATTTAATCTTCCATTACCGTGTGATCTCGGGAGAAATAGTGGTTCATCAATTTTAATTTCATTTTAACTATCTTGTGTACTATTCCCTGTAAACAGAGGGCTCTCCCATGTATTTGAAGAGAACTGAATCATATTCCCTTTTTTTAGAAACTCCATGGGTGTGTGTAGTTCCTCAATCCACATTCATTACCTATGACTTTCCAGCACTTGTAACTGACTCTTTTTCATGTTACTGTTTGTGTTCTCTTTCCACCAGGGAGATACACTCGACTATCTTGGAATACCAGGGCTTCACTTAGCTGGAAGCCAAGGAGTGATTGTCATTGCAATTTGCCAAGCCATTTTGATGGTAACTTATGACAAACAATCTTATTTTCTGTGGTCTGGTATTTTACTTGTCATATCTTTTGGGCAGTTTAATTAATGGCATGAATGGTTTAGGAAGTGTGACGCTATAATCTGTCCTGTTTTGGGTTTAAACCAGTGTTAAGTTGAGTTGGTTAATCTCAATCAATTCTCATCCATTCCCACAAGAACACAAGTGTTGTGGCTCCCCATGCAGTCTCTACAACGAGCACTGGCCCTTGATAAGCTTGTTGAGGAACTTGGAATTTAAATTATTCTTTTGGAAATCGATCCTTTTGGAGATTATTCAAGTTAGAAAAAAGAGACTTTTGCTGAAGAAAAAAGTTCAAAGATATAAACCTCCAGATGGGGCGAAAGGGAAAACATAATGCCTAAAGAAAAAGGATTACAAGAAACCAAAACAAGCCAAACAAAAAGAAGGAACTAAAGAATCGCCAACAATCAACAAAAAATGCAAAACTAGAAGATCGAAGTGCCAACCTTTTAGATGGCTTTCAAATGAAAGCTAAAACATTAACGGGAATCTCCTCAAATCGCTGAAGCTTCAAATAGAAACCGCACCAACCCACTTGAAACATCACACCAGAAAAGGAAGAAAAGCAGCATCTGCCATGGAGAAATGCATGAACACCAAGGGGACGAACAACCAAAACCTCTATTAAGTGCAAATCTTAACTGCAAAAAACACTAGAAGAAGCATCAGCTTCACCCAAGAACTAAAAACTGAAGAGCAAAACAAAAAATATCCACCAAAGACAAAATCAATGCAAAAAGATAATGGAACCAAAGTCCAAAATCCCATCCTCATAGATTTAATGCCATATTTCTCTAGAAAGGAATGAAGTTTTTCCTTTTCATGGAATGTTTTGATGAGAGGGGGGAGATAAAGAACTATCTGACTGCTACTTTAAAGGTAAATTAATATTGTCTTCTTGAAAAATAGAACAAAGAGCTTCGTTAAAATCCTCGTCATCAGGGGCCTCGTCAGTCGTCAGTCGTAAGAAACCTTTTCATGCGATTAACAATTGGAAAATTGAACTCCAAGTCATAACTACTAAGACTTATTCGATTCCTCACTTTTCTTCATAAAAAAATAACTTTTTGGTGATCCCATTGAGTTATATAATATCCATAGAAAGAGTGTTATTAACTAAGGATGTTGAAGAATTAGATAGTCTATTGTTAAGAGAGCGTATTAAACTATTATATGTCTGATTGTTCTTACAACTGTGTGATGTAAGTTAAAATGTAAATAGGTTGGACCCGAATATGCAAGATATTGTGGCATAGAGGCATTGGAGCCTCTGGGAATATATCTGCCGGGGGATATAAATTATCCAGGTGGTGTGTTGTTTGATCCCTTGAATCTGTCCAAGGATGCTGCAGCCTTTGAGGAACTAAAAGTAAAAGAGATTAAAAATGGGCGTTTAGCCATGGTTGCCTGGCTAGGATTTTACAGTCAAGCTGCTTTGACGGGTAAGGGACCAGTCCAAAACCTTCTTGACCACATTGCAGATCCTTTCCACAATAACTTTCTTTCCCTGCTCAATTCTTCATTTAGTCGTTAA

mRNA sequence

ATGAAGTTTCTCCAGTTATTTGGCTGGGAACAAGCACCAAACCTTGATTGTCGGAATGGCGGATGTGAAGGGATTGTTGGAGGTGTCATCCACCAAATAGTAGATGAGCACTTCTCTGACAACACATTCAGCTCGTGGTATGGAGAAGAGCGTCCTCGGTGGCTTGGTCCACTACCATATGATTATCCAAAATATCTGACAGGTGAACTGCCTGGTGATTATGGATTTGATATTGCAGGTTTGAGTGAGGATCCTGTGGCTTTCCAGAAATTCTTCAACTTTGAAATATTGCATGCTCGTTGGGCTATGTTAGCATCCCTAGGTGCTTTAGTTCCAGAGATCTTGGATATTTTTGGAGCTTTTCATTTCACTGAACCCATCTGGTGGCGAGTGGGCTATTCAAAACTTAAGGGAGATACACTCGACTATCTTGGAATACCAGGGCTTCACTTAGCTGGAAGCCAAGGAGTGATTGTCATTGCAATTTGCCAAGCCATTTTGATGGTTGGACCCGAATATGCAAGATATTGTGGCATAGAGGCATTGGAGCCTCTGGGAATATATCTGCCGGGGGATATAAATTATCCAGGTGGTGTGTTGTTTGATCCCTTGAATCTGTCCAAGGATGCTGCAGCCTTTGAGGAACTAAAAGTAAAAGAGATTAAAAATGGGCGTTTAGCCATGGTTGCCTGGCTAGGATTTTACAGTCAAGCTGCTTTGACGGGTAAGGGACCAGTCCAAAACCTTCTTGACCACATTGCAGATCCTTTCCACAATAACTTTCTTTCCCTGCTCAATTCTTCATTTAGTCGTTAA

Coding sequence (CDS)

ATGAAGTTTCTCCAGTTATTTGGCTGGGAACAAGCACCAAACCTTGATTGTCGGAATGGCGGATGTGAAGGGATTGTTGGAGGTGTCATCCACCAAATAGTAGATGAGCACTTCTCTGACAACACATTCAGCTCGTGGTATGGAGAAGAGCGTCCTCGGTGGCTTGGTCCACTACCATATGATTATCCAAAATATCTGACAGGTGAACTGCCTGGTGATTATGGATTTGATATTGCAGGTTTGAGTGAGGATCCTGTGGCTTTCCAGAAATTCTTCAACTTTGAAATATTGCATGCTCGTTGGGCTATGTTAGCATCCCTAGGTGCTTTAGTTCCAGAGATCTTGGATATTTTTGGAGCTTTTCATTTCACTGAACCCATCTGGTGGCGAGTGGGCTATTCAAAACTTAAGGGAGATACACTCGACTATCTTGGAATACCAGGGCTTCACTTAGCTGGAAGCCAAGGAGTGATTGTCATTGCAATTTGCCAAGCCATTTTGATGGTTGGACCCGAATATGCAAGATATTGTGGCATAGAGGCATTGGAGCCTCTGGGAATATATCTGCCGGGGGATATAAATTATCCAGGTGGTGTGTTGTTTGATCCCTTGAATCTGTCCAAGGATGCTGCAGCCTTTGAGGAACTAAAAGTAAAAGAGATTAAAAATGGGCGTTTAGCCATGGTTGCCTGGCTAGGATTTTACAGTCAAGCTGCTTTGACGGGTAAGGGACCAGTCCAAAACCTTCTTGACCACATTGCAGATCCTTTCCACAATAACTTTCTTTCCCTGCTCAATTCTTCATTTAGTCGTTAA

Protein sequence

MKFLQLFGWEQAPNLDCRNGGCEGIVGGVIHQIVDEHFSDNTFSSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNNFLSLLNSSFSR*

Homology

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BLAST of CsaV3_4G037740 vs. NCBI nr
Match: KAE8649970.1 (hypothetical protein Csa_012955 [Cucumis sativus])

HSP 1 Score: 580.5 bits (1495), Expect = 7.7e-162
Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 0


Query: 1   MKFLQLFGWEQAPNLDCRNGGCEGIVGGVIHQIVDEHFSDNTFSSWYGEERPRWLGPLPY 60
           MKFLQLFGWEQAPNLDCRNGGCEGIVGGVIHQIVDEHFSDNTFSSWYGEERPRWLGPLPY
Sbjct: 1   MKFLQLFGWEQAPNLDCRNGGCEGIVGGVIHQIVDEHFSDNTFSSWYGEERPRWLGPLPY 60

Query: 61  DYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDIFGA 120
           DYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDIFGA
Sbjct: 61  DYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDIFGA 120

Query: 121 FHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYCGIE 180
           FHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYCGIE
Sbjct: 121 FHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYCGIE 180

Query: 181 ALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQAAL 240
           ALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQAAL
Sbjct: 181 ALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQAAL 240

Query: 241 TGKGPVQNLLDHIADPFHNNFLSLLNSSFSR 272
           TGKGPVQNLLDHIADPFHNNFLSLLNSSFSR
Sbjct: 241 TGKGPVQNLLDHIADPFHNNFLSLLNSSFSR 271

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BLAST of CsaV3_4G037740 vs. NCBI nr
Match: TYK19913.1 (chlorophyll a-b binding protein of LHCII type 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 525.0 bits (1351), Expect = 3.8e-145
Identity = 249/271 (91.88%), Postives = 259/271 (95.57%), Query Frame = 0


Query: 1   MKFLQLFGWEQAPNLDCRNGGCEGIVGGV-IHQIV--DEHFSDNTFSSWYGEERPRWLGP 60
           MKFLQLFGW+QA N+DC NGGC+GIVGGV I +++    +F +N   SWYGEERPRWLGP
Sbjct: 1   MKFLQLFGWKQASNIDCLNGGCKGIVGGVNIWRLISLQVYFGEN-MHSWYGEERPRWLGP 60

Query: 61  LPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDI 120
           LPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQK+FNFEILHARWAMLASLGALVPEILDI
Sbjct: 61  LPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKYFNFEILHARWAMLASLGALVPEILDI 120

Query: 121 FGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYC 180
           FGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYC
Sbjct: 121 FGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYC 180

Query: 181 GIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQ 240
           GIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQ
Sbjct: 181 GIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQ 240

Query: 241 AALTGKGPVQNLLDHIADPFHNNFLSLLNSS 269
           AALTGKGPVQNLLDHI+DPFHNNFLSLLNSS
Sbjct: 241 AALTGKGPVQNLLDHISDPFHNNFLSLLNSS 270

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BLAST of CsaV3_4G037740 vs. NCBI nr
Match: XP_004145567.1 (chlorophyll a-b binding protein 7, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 483.4 bits (1243), Expect = 1.3e-132
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0


Query: 44  SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAM 103
           SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAM
Sbjct: 111 SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAM 170

Query: 104 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 163
           LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC
Sbjct: 171 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 230

Query: 164 QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN 223
           QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN
Sbjct: 231 QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN 290

Query: 224 GRLAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNNFLSLLNSSFSR 272
           GRLAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNNFLSLLNSSFSR
Sbjct: 291 GRLAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNNFLSLLNSSFSR 338

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BLAST of CsaV3_4G037740 vs. NCBI nr
Match: XP_008453032.2 (PREDICTED: chlorophyll a-b binding protein of LHCII type 1 isoform X1 [Cucumis melo])

HSP 1 Score: 475.3 bits (1222), Expect = 3.5e-130
Identity = 223/225 (99.11%), Postives = 225/225 (100.00%), Query Frame = 0


Query: 44  SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAM 103
           SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQK+FNFEILHARWAM
Sbjct: 147 SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKYFNFEILHARWAM 206

Query: 104 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 163
           LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC
Sbjct: 207 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 266

Query: 164 QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN 223
           QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN
Sbjct: 267 QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN 326

Query: 224 GRLAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNNFLSLLNSS 269
           GRLAMVAWLGFYSQAALTGKGPVQNLLDHI+DPFHNNFLSLLNSS
Sbjct: 327 GRLAMVAWLGFYSQAALTGKGPVQNLLDHISDPFHNNFLSLLNSS 371

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BLAST of CsaV3_4G037740 vs. NCBI nr
Match: XP_038898449.1 (chlorophyll a-b binding protein 7, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 471.9 bits (1213), Expect = 3.8e-129
Identity = 220/225 (97.78%), Postives = 225/225 (100.00%), Query Frame = 0


Query: 44  SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAM 103
           SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQK+FNFEILHARWAM
Sbjct: 123 SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKYFNFEILHARWAM 182

Query: 104 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 163
           LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGV+VIAIC
Sbjct: 183 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVVVIAIC 242

Query: 164 QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN 223
           QAILMVGPEYARYCGIEALEPLGI+LPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN
Sbjct: 243 QAILMVGPEYARYCGIEALEPLGIFLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN 302

Query: 224 GRLAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNNFLSLLNSS 269
           GRLAMVAWLGFYSQAALTGKGPVQNLL+HI+DPFHNNFLSLLNSS
Sbjct: 303 GRLAMVAWLGFYSQAALTGKGPVQNLLEHISDPFHNNFLSLLNSS 347

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BLAST of CsaV3_4G037740 vs. ExPASy Swiss-Prot
Match: Q9C9K1 (Chlorophyll a-b binding protein 7, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB7 PE=2 SV=1)

HSP 1 Score: 412.9 bits (1060), Expect = 2.8e-114
Identity = 180/224 (80.36%), Postives = 205/224 (91.52%), Query Frame = 0


Query: 44  SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAM 103
           S WYG+ERPRW GP+PYDYP YLTGELPGDYGFDIAGL +D + F K+FNFEILHARWAM
Sbjct: 104 SKWYGKERPRWFGPIPYDYPPYLTGELPGDYGFDIAGLGKDRLTFDKYFNFEILHARWAM 163

Query: 104 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 163
           LA+LGAL+PE+ D+ G FHF EP+WWRVGYSKL+G+TL+YLGIPGLH+AGSQGVIVIAIC
Sbjct: 164 LAALGALIPEVFDLTGTFHFAEPVWWRVGYSKLQGETLEYLGIPGLHVAGSQGVIVIAIC 223

Query: 164 QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN 223
           Q +LMVGPEYARYCGIEALEPLGIYLPGDINYPGG LFDPLNLS+D  AFE+LKVKEIKN
Sbjct: 224 QVLLMVGPEYARYCGIEALEPLGIYLPGDINYPGGTLFDPLNLSEDPVAFEDLKVKEIKN 283

Query: 224 GRLAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNNFLSLLNS 268
           GRLAMVAWLGFY+QAA TGKGPVQNL+DH++DP HNN +++L +
Sbjct: 284 GRLAMVAWLGFYAQAAFTGKGPVQNLVDHVSDPLHNNLIAMLQT 327

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BLAST of CsaV3_4G037740 vs. ExPASy Swiss-Prot
Match: Q9XF87 (Chlorophyll a-b binding protein 2.4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCB2.4 PE=1 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 7.2e-54
Identity = 113/217 (52.07%), Postives = 138/217 (63.59%), Query Frame = 0


Query: 44  SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAM 103
           S WYG +RP++LGP   + P YLTGE PGDYG+D AGLS DP  F K    E++H+RWAM
Sbjct: 48  SIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 107

Query: 104 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 163
           L +LG   PEIL   G   F E +W++ G        LDYLG P  +L  +Q ++ I  C
Sbjct: 108 LGALGCTFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWAC 167

Query: 164 QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN 223
           Q +LM   E  R  G     PLG  L  D  YPGG  FDPLNL++D  AF ELKVKE+KN
Sbjct: 168 QVVLMGFIEGYRIGG----GPLGEGL--DPLYPGGA-FDPLNLAEDPEAFSELKVKELKN 227

Query: 224 GRLAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNN 261
           GRLAM +  GF+ QA +TGKGP++NL DHIADP  NN
Sbjct: 228 GRLAMFSMFGFFVQAIVTGKGPIENLFDHIADPVANN 254

[Close]

BLAST of CsaV3_4G037740 vs. ExPASy Swiss-Prot
Match: P12470 (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 GN=CABE PE=3 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 3.6e-53
Identity = 110/217 (50.69%), Postives = 137/217 (63.13%), Query Frame = 0


Query: 44  SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAM 103
           S WYG +R ++LGP   + P YLTGE PGDYG+D AGLS DP  F K    E++H RWAM
Sbjct: 48  SPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 107

Query: 104 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 163
           L +LG + PE+L   G   F E +W++ G        LDYLG P   L  +Q ++ I  C
Sbjct: 108 LGALGCVFPELLARNGV-KFGEAVWFKAGSQIFSEGGLDYLGNPS--LVHAQSILAIWAC 167

Query: 164 QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN 223
           Q +LM   E  R  G    EPLG  +  D  YPGG  FDPL L++D  AF ELKVKEIKN
Sbjct: 168 QVVLMGAVEGYRVAG----EPLGEVV--DPLYPGG-SFDPLGLAEDPEAFAELKVKEIKN 227

Query: 224 GRLAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNN 261
           GRLAM +  GF+ QA +TGKGP++NL DH+ADP +NN
Sbjct: 228 GRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNNN 254

[Close]

BLAST of CsaV3_4G037740 vs. ExPASy Swiss-Prot
Match: P22686 (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii OX=3054 PE=2 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 4.7e-53
Identity = 105/215 (48.84%), Postives = 131/215 (60.93%), Query Frame = 0


Query: 46  WYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLA 105
           WYG +R +WLGP   + P YLTGE PGDYG+D AGLS DP  F+K+   E++HARWA+L 
Sbjct: 39  WYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLG 98

Query: 106 SLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQA 165
           +LG L PE+L  +    F EP+W++ G        LDYLG P   L  +Q ++     Q 
Sbjct: 99  ALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPA--LIHAQNIVATLAVQV 158

Query: 166 ILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGR 225
           +LM   E  R  G  A E L    PG+        FDPL L+ D   F ELKVKEIKNGR
Sbjct: 159 VLMGLIEGYRVNGGPAGEGLDPLYPGE-------SFDPLGLADDPDTFAELKVKEIKNGR 218

Query: 226 LAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNN 261
           LAM +  GF+ QA +TGKGP+QNL DH+ADP  NN
Sbjct: 219 LAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNN 244

[Close]

BLAST of CsaV3_4G037740 vs. ExPASy Swiss-Prot
Match: P27518 (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum OX=3635 GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 209.1 bits (531), Expect = 6.1e-53
Identity = 112/217 (51.61%), Postives = 135/217 (62.21%), Query Frame = 0


Query: 44  SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAM 103
           S WYG +RP++LGP     P YLTGE PGDYG+D AGLS DP  F K    E++H RWAM
Sbjct: 47  SIWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 106

Query: 104 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 163
           L +LG + PEIL   G   F E +W++ G        LDYLG P  +L  +Q ++ I  C
Sbjct: 107 LGALGCVFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWAC 166

Query: 164 QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN 223
           Q +LM   E  R  G     PLG  L  D  YPGG  FDPL L+ D  AF ELKVKEIKN
Sbjct: 167 QVVLMGFVEGYRVGG----GPLGEGL--DPIYPGGA-FDPLGLADDPDAFAELKVKEIKN 226

Query: 224 GRLAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNN 261
           GRLAM +  GF+ QA +TGKGP++NL DH+ADP  NN
Sbjct: 227 GRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANN 253

[Close]

BLAST of CsaV3_4G037740 vs. ExPASy TrEMBL
Match: A0A0A0L0U5 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_4G664570 PE=3 SV=1)

HSP 1 Score: 575.1 bits (1481), Expect = 1.6e-160
Identity = 271/274 (98.91%), Postives = 271/274 (98.91%), Query Frame = 0


Query: 1   MKFLQLFGWEQAPNLDCRNGGCEGIVGGVIHQI---VDEHFSDNTFSSWYGEERPRWLGP 60
           MKFLQLFGWEQAPNLDCRNGGCEGIVGGVIHQI   VDEHFSDNTFSSWYGEERPRWLGP
Sbjct: 1   MKFLQLFGWEQAPNLDCRNGGCEGIVGGVIHQIEHAVDEHFSDNTFSSWYGEERPRWLGP 60

Query: 61  LPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDI 120
           LPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDI
Sbjct: 61  LPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDI 120

Query: 121 FGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYC 180
           FGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYC
Sbjct: 121 FGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYC 180

Query: 181 GIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQ 240
           GIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQ
Sbjct: 181 GIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQ 240

Query: 241 AALTGKGPVQNLLDHIADPFHNNFLSLLNSSFSR 272
           AALTGKGPVQNLLDHIADPFHNNFLSLLNSSFSR
Sbjct: 241 AALTGKGPVQNLLDHIADPFHNNFLSLLNSSFSR 274

[Close]

BLAST of CsaV3_4G037740 vs. ExPASy TrEMBL
Match: A0A5D3D8P8 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00250 PE=3 SV=1)

HSP 1 Score: 525.0 bits (1351), Expect = 1.8e-145
Identity = 249/271 (91.88%), Postives = 259/271 (95.57%), Query Frame = 0


Query: 1   MKFLQLFGWEQAPNLDCRNGGCEGIVGGV-IHQIV--DEHFSDNTFSSWYGEERPRWLGP 60
           MKFLQLFGW+QA N+DC NGGC+GIVGGV I +++    +F +N   SWYGEERPRWLGP
Sbjct: 1   MKFLQLFGWKQASNIDCLNGGCKGIVGGVNIWRLISLQVYFGEN-MHSWYGEERPRWLGP 60

Query: 61  LPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDI 120
           LPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQK+FNFEILHARWAMLASLGALVPEILDI
Sbjct: 61  LPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKYFNFEILHARWAMLASLGALVPEILDI 120

Query: 121 FGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYC 180
           FGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYC
Sbjct: 121 FGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYC 180

Query: 181 GIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQ 240
           GIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQ
Sbjct: 181 GIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQ 240

Query: 241 AALTGKGPVQNLLDHIADPFHNNFLSLLNSS 269
           AALTGKGPVQNLLDHI+DPFHNNFLSLLNSS
Sbjct: 241 AALTGKGPVQNLLDHISDPFHNNFLSLLNSS 270

[Close]

BLAST of CsaV3_4G037740 vs. ExPASy TrEMBL
Match: A0A1S3BWE1 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493859 PE=3 SV=1)

HSP 1 Score: 475.3 bits (1222), Expect = 1.7e-130
Identity = 223/225 (99.11%), Postives = 225/225 (100.00%), Query Frame = 0


Query: 44  SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAM 103
           SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQK+FNFEILHARWAM
Sbjct: 147 SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKYFNFEILHARWAM 206

Query: 104 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 163
           LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC
Sbjct: 207 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 266

Query: 164 QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN 223
           QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN
Sbjct: 267 QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN 326

Query: 224 GRLAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNNFLSLLNSS 269
           GRLAMVAWLGFYSQAALTGKGPVQNLLDHI+DPFHNNFLSLLNSS
Sbjct: 327 GRLAMVAWLGFYSQAALTGKGPVQNLLDHISDPFHNNFLSLLNSS 371

[Close]

BLAST of CsaV3_4G037740 vs. ExPASy TrEMBL
Match: A0A5A7VCG1 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G004020 PE=3 SV=1)

HSP 1 Score: 468.4 bits (1204), Expect = 2.1e-128
Identity = 221/225 (98.22%), Postives = 223/225 (99.11%), Query Frame = 0


Query: 44  SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAM 103
           SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQK+FNFEILHARWAM
Sbjct: 111 SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKYFNFEILHARWAM 170

Query: 104 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 163
           LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLK  TLDYLGIPGLHLAGSQGVIVIAIC
Sbjct: 171 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKVYTLDYLGIPGLHLAGSQGVIVIAIC 230

Query: 164 QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN 223
           QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN
Sbjct: 231 QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN 290

Query: 224 GRLAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNNFLSLLNSS 269
           GRLAMVAWLGFYSQAALTGKGPVQNLLDHI+DPFHNNFLSLLNSS
Sbjct: 291 GRLAMVAWLGFYSQAALTGKGPVQNLLDHISDPFHNNFLSLLNSS 335

[Close]

BLAST of CsaV3_4G037740 vs. ExPASy TrEMBL
Match: A0A6J1FCV0 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111442842 PE=3 SV=1)

HSP 1 Score: 468.0 bits (1203), Expect = 2.7e-128
Identity = 217/225 (96.44%), Postives = 225/225 (100.00%), Query Frame = 0


Query: 44  SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAM 103
           SSWYGE+RPRWLGPLPY+YPKYLTGELPGDYGFDIAGLSEDPVAF+K+FNFEILHARWAM
Sbjct: 113 SSWYGEKRPRWLGPLPYNYPKYLTGELPGDYGFDIAGLSEDPVAFRKYFNFEILHARWAM 172

Query: 104 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 163
           LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC
Sbjct: 173 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 232

Query: 164 QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN 223
           QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN
Sbjct: 233 QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN 292

Query: 224 GRLAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNNFLSLLNSS 269
           GRLAMVAWLGFYSQAALTGKGP+QNLL+H++DPFHNNFLSLLNSS
Sbjct: 293 GRLAMVAWLGFYSQAALTGKGPIQNLLEHVSDPFHNNFLSLLNSS 337

[Close]

BLAST of CsaV3_4G037740 vs. TAIR 10
Match: AT1G76570.1 (Chlorophyll A-B binding family protein )

HSP 1 Score: 412.9 bits (1060), Expect = 2.0e-115
Identity = 180/224 (80.36%), Postives = 205/224 (91.52%), Query Frame = 0


Query: 44  SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAM 103
           S WYG+ERPRW GP+PYDYP YLTGELPGDYGFDIAGL +D + F K+FNFEILHARWAM
Sbjct: 104 SKWYGKERPRWFGPIPYDYPPYLTGELPGDYGFDIAGLGKDRLTFDKYFNFEILHARWAM 163

Query: 104 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 163
           LA+LGAL+PE+ D+ G FHF EP+WWRVGYSKL+G+TL+YLGIPGLH+AGSQGVIVIAIC
Sbjct: 164 LAALGALIPEVFDLTGTFHFAEPVWWRVGYSKLQGETLEYLGIPGLHVAGSQGVIVIAIC 223

Query: 164 QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN 223
           Q +LMVGPEYARYCGIEALEPLGIYLPGDINYPGG LFDPLNLS+D  AFE+LKVKEIKN
Sbjct: 224 QVLLMVGPEYARYCGIEALEPLGIYLPGDINYPGGTLFDPLNLSEDPVAFEDLKVKEIKN 283

Query: 224 GRLAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNNFLSLLNS 268
           GRLAMVAWLGFY+QAA TGKGPVQNL+DH++DP HNN +++L +
Sbjct: 284 GRLAMVAWLGFYAQAAFTGKGPVQNLVDHVSDPLHNNLIAMLQT 327

[Close]

BLAST of CsaV3_4G037740 vs. TAIR 10
Match: AT3G27690.1 (photosystem II light harvesting complex gene 2.3 )

HSP 1 Score: 212.2 bits (539), Expect = 5.1e-55
Identity = 113/217 (52.07%), Postives = 138/217 (63.59%), Query Frame = 0


Query: 44  SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAM 103
           S WYG +RP++LGP   + P YLTGE PGDYG+D AGLS DP  F K    E++H+RWAM
Sbjct: 48  SIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 107

Query: 104 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 163
           L +LG   PEIL   G   F E +W++ G        LDYLG P  +L  +Q ++ I  C
Sbjct: 108 LGALGCTFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWAC 167

Query: 164 QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN 223
           Q +LM   E  R  G     PLG  L  D  YPGG  FDPLNL++D  AF ELKVKE+KN
Sbjct: 168 QVVLMGFIEGYRIGG----GPLGEGL--DPLYPGGA-FDPLNLAEDPEAFSELKVKELKN 227

Query: 224 GRLAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNN 261
           GRLAM +  GF+ QA +TGKGP++NL DHIADP  NN
Sbjct: 228 GRLAMFSMFGFFVQAIVTGKGPIENLFDHIADPVANN 254

[Close]

BLAST of CsaV3_4G037740 vs. TAIR 10
Match: AT2G05100.1 (photosystem II light harvesting complex gene 2.1 )

HSP 1 Score: 207.6 bits (527), Expect = 1.3e-53
Identity = 111/217 (51.15%), Postives = 137/217 (63.13%), Query Frame = 0


Query: 44  SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAM 103
           S WYG +RP++LGP   + P YLTGE PGDYG+D AGLS DP  F K    E++H+RWAM
Sbjct: 47  SIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 106

Query: 104 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 163
           L +LG   PEIL   G   F E +W++ G        LDYLG P  +L  +Q ++ I   
Sbjct: 107 LGALGCTFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWAV 166

Query: 164 QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN 223
           Q +LM   E  R  G     PLG  L  D  YPGG  FDPLNL++D  AF ELKVKE+KN
Sbjct: 167 QVVLMGFIEGYRIGG----GPLGEGL--DPLYPGGA-FDPLNLAEDPEAFSELKVKELKN 226

Query: 224 GRLAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNN 261
           GRLAM +  GF+ QA +TGKGP++NL DH+ADP  NN
Sbjct: 227 GRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANN 253

[Close]

BLAST of CsaV3_4G037740 vs. TAIR 10
Match: AT2G05070.1 (photosystem II light harvesting complex gene 2.2 )

HSP 1 Score: 207.6 bits (527), Expect = 1.3e-53
Identity = 111/217 (51.15%), Postives = 137/217 (63.13%), Query Frame = 0


Query: 44  SSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAM 103
           S WYG +RP++LGP   + P YLTGE PGDYG+D AGLS DP  F K    E++H+RWAM
Sbjct: 47  SIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 106

Query: 104 LASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAIC 163
           L +LG   PEIL   G   F E +W++ G        LDYLG P  +L  +Q ++ I   
Sbjct: 107 LGALGCTFPEILSKNGV-KFGEAVWFKAGSQIFSEGGLDYLGNP--NLIHAQSILAIWAV 166

Query: 164 QAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKN 223
           Q +LM   E  R  G     PLG  L  D  YPGG  FDPLNL++D  AF ELKVKE+KN
Sbjct: 167 QVVLMGFIEGYRIGG----GPLGEGL--DPLYPGGA-FDPLNLAEDPEAFSELKVKELKN 226

Query: 224 GRLAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNN 261
           GRLAM +  GF+ QA +TGKGP++NL DH+ADP  NN
Sbjct: 227 GRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANN 253

[Close]

BLAST of CsaV3_4G037740 vs. TAIR 10
Match: AT5G54270.1 (light-harvesting chlorophyll B-binding protein 3 )

HSP 1 Score: 204.9 bits (520), Expect = 8.1e-53
Identity = 102/215 (47.44%), Postives = 132/215 (61.40%), Query Frame = 0


Query: 46  WYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLA 105
           WYG +R ++LGP     P YLTGE PGDYG+D AGLS DP AF K    E++H RWAML 
Sbjct: 47  WYGPDRVKYLGPFSVQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLG 106

Query: 106 SLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQA 165
           + G + PE+L  +    F EP+W++ G        LDYLG P  +L  +Q ++ +   Q 
Sbjct: 107 AFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNP--NLVHAQSILAVLGFQV 166

Query: 166 ILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGR 225
           ILM   E  R  G++ +        G+  YPGG  FDPL L+ D   F ELKVKEIKNGR
Sbjct: 167 ILMGLVEGFRINGLDGVG------EGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGR 226

Query: 226 LAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNN 261
           LAM +  GF+ QA +TGKGP++NLLDH+ +P  NN
Sbjct: 227 LAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 253

The following BLAST results are available for this feature:

BLAST of CsaV3_4G037740 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649970.1	7.7e-162	100.00	hypothetical protein Csa_012955 [Cucumis sativus]	[more]
TYK19913.1	3.8e-145	91.88	chlorophyll a-b binding protein of LHCII type 1 isoform X1 [Cucumis melo var. ma...	[more]
XP_004145567.1	1.3e-132	100.00	chlorophyll a-b binding protein 7, chloroplastic isoform X1 [Cucumis sativus]	[more]
XP_008453032.2	3.5e-130	99.11	PREDICTED: chlorophyll a-b binding protein of LHCII type 1 isoform X1 [Cucumis m...	[more]
XP_038898449.1	3.8e-129	97.78	chlorophyll a-b binding protein 7, chloroplastic isoform X1 [Benincasa hispida]	[more]

BLAST of CsaV3_4G037740 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C9K1	2.8e-114	80.36	Chlorophyll a-b binding protein 7, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
Q9XF87	7.2e-54	52.07	Chlorophyll a-b binding protein 2.4, chloroplastic OS=Arabidopsis thaliana OX=37...	[more]
P12470	3.6e-53	50.69	Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia OX...	[more]
P22686	4.7e-53	48.84	Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas ...	[more]
P27518	6.1e-53	51.61	Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum OX=3635...	[more]

BLAST of CsaV3_4G037740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0U5	1.6e-160	98.91	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa...	[more]
A0A5D3D8P8	1.8e-145	91.88	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3BWE1	1.7e-130	99.11	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A5A7VCG1	2.1e-128	98.22	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A6J1FCV0	2.7e-128	96.44	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]

BLAST of CsaV3_4G037740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G76570.1	2.0e-115	80.36	Chlorophyll A-B binding family protein	[more]
AT3G27690.1	5.1e-55	52.07	photosystem II light harvesting complex gene 2.3	[more]
AT2G05100.1	1.3e-53	51.15	photosystem II light harvesting complex gene 2.1	[more]
AT2G05070.1	1.3e-53	51.15	photosystem II light harvesting complex gene 2.2	[more]
AT5G54270.1	8.1e-53	47.44	light-harvesting chlorophyll B-binding protein 3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 63..238 e-value: 7.9E-42 score: 143.5
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 53..265 e-value: 1.0E-70 score: 239.6
None	No IPR available	PANTHER	PTHR21649:SF74	CHLOROPHYLL A-B BINDING PROTEIN 7, CHLOROPLASTIC	coord: 44..262
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 45..267
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 44..262

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G037740.1	CsaV3_4G037740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0016020	membrane