CsaV3_4G037320 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G037320
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	DNA repair RAD52-like protein 2, chloroplastic
Location	chr4: 26180580 .. 26181209 (+)
RNA-Seq Expression	CsaV3_4G037320
Synteny	CsaV3_4G037320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCTCCAAACGTATGCTCATTCCCAGCTCTCAGGACCTCACCTCACTGCCTTATCCTCCATACTCTCTTCCTACTCAACTAGTGAGATTCGACTCCCTCTAACTTCTACTACTTCAAGACGACGCCATCTTCGTCTTGTTTGCTCCAGCAGTGATGCTAATAGTAATAAGAAGGGAGTACCCAATTCCAACTATGTTGTTCCACTTAATAAATCTTTTTCCCCAGCTAACTCATCTTGCATCACTCGACCCCTTGCTGAGATCCTCCGCGATCTAAACAAGAGAATCCCCGATAACATCGCTCAGAAAGCCCCTCATTCTGACACCAATGATCGTTCTCCTGCCACTTTCATCCCTTGGTTTCATGCTAATAGGATGTTGAGTTTCTATGCCCCTGGATGGTGTGGAGAGATACGAGATGTCATATTTTCAGACAATGGTAGTGTAACTGTGGTATATCGTGTGACTGTTCGAGGATCGGATGGAGAAGCACATCGTGAATCGACAGGAACTGTCTCAGCTACTGATAGCAATATTGAGGATCCTGTAGCTGCTGCAGAGGAAATAGCTTTTTGCAAGGCTTGTGCGAGATTTGGCCTCGGTTTGTACCTCTATCATGAAGAATGA

mRNA sequence

ATGGCTCTCCAAACGTATGCTCATTCCCAGCTCTCAGGACCTCACCTCACTGCCTTATCCTCCATACTCTCTTCCTACTCAACTAGTGAGATTCGACTCCCTCTAACTTCTACTACTTCAAGACGACGCCATCTTCGTCTTGTTTGCTCCAGCAGTGATGCTAATAGTAATAAGAAGGGAGTACCCAATTCCAACTATGTTGTTCCACTTAATAAATCTTTTTCCCCAGCTAACTCATCTTGCATCACTCGACCCCTTGCTGAGATCCTCCGCGATCTAAACAAGAGAATCCCCGATAACATCGCTCAGAAAGCCCCTCATTCTGACACCAATGATCGTTCTCCTGCCACTTTCATCCCTTGGTTTCATGCTAATAGGATGTTGAGTTTCTATGCCCCTGGATGGTGTGGAGAGATACGAGATGTCATATTTTCAGACAATGGTAGTGTAACTGTGGTATATCGTGTGACTGTTCGAGGATCGGATGGAGAAGCACATCGTGAATCGACAGGAACTGTCTCAGCTACTGATAGCAATATTGAGGATCCTGTAGCTGCTGCAGAGGAAATAGCTTTTTGCAAGGCTTGTGCGAGATTTGGCCTCGGTTTGTACCTCTATCATGAAGAATGA

Coding sequence (CDS)

ATGGCTCTCCAAACGTATGCTCATTCCCAGCTCTCAGGACCTCACCTCACTGCCTTATCCTCCATACTCTCTTCCTACTCAACTAGTGAGATTCGACTCCCTCTAACTTCTACTACTTCAAGACGACGCCATCTTCGTCTTGTTTGCTCCAGCAGTGATGCTAATAGTAATAAGAAGGGAGTACCCAATTCCAACTATGTTGTTCCACTTAATAAATCTTTTTCCCCAGCTAACTCATCTTGCATCACTCGACCCCTTGCTGAGATCCTCCGCGATCTAAACAAGAGAATCCCCGATAACATCGCTCAGAAAGCCCCTCATTCTGACACCAATGATCGTTCTCCTGCCACTTTCATCCCTTGGTTTCATGCTAATAGGATGTTGAGTTTCTATGCCCCTGGATGGTGTGGAGAGATACGAGATGTCATATTTTCAGACAATGGTAGTGTAACTGTGGTATATCGTGTGACTGTTCGAGGATCGGATGGAGAAGCACATCGTGAATCGACAGGAACTGTCTCAGCTACTGATAGCAATATTGAGGATCCTGTAGCTGCTGCAGAGGAAATAGCTTTTTGCAAGGCTTGTGCGAGATTTGGCCTCGGTTTGTACCTCTATCATGAAGAATGA

Protein sequence

MALQTYAHSQLSGPHLTALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCSSSDANSNKKGVPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIPWFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNIEDPVAAAEEIAFCKACARFGLGLYLYHEE*

Homology

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BLAST of CsaV3_4G037320 vs. NCBI nr
Match: XP_004145544.1 (DNA repair RAD52-like protein 2, chloroplastic [Cucumis sativus] >XP_031740574.1 DNA repair RAD52-like protein 2, chloroplastic [Cucumis sativus] >KGN55506.1 hypothetical protein Csa_011927 [Cucumis sativus])

HSP 1 Score: 417.9 bits (1073), Expect = 5.1e-113
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0


Query: 1   MALQTYAHSQLSGPHLTALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCSSSDANSNKKG 60
           MALQTYAHSQLSGPHLTALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCSSSDANSNKKG
Sbjct: 1   MALQTYAHSQLSGPHLTALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCSSSDANSNKKG 60

Query: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIP 120
           VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIP
Sbjct: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIP 120

Query: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180
           WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI
Sbjct: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180

Query: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 210
           EDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 209

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BLAST of CsaV3_4G037320 vs. NCBI nr
Match: XP_008452970.1 (PREDICTED: uncharacterized protein LOC103493818 [Cucumis melo] >XP_016901316.1 PREDICTED: uncharacterized protein LOC103493818 [Cucumis melo] >KAA0064645.1 uncharacterized protein E6C27_scaffold255G003690 [Cucumis melo var. makuwa] >TYK19947.1 uncharacterized protein E5676_scaffold134G00600 [Cucumis melo var. makuwa])

HSP 1 Score: 400.6 bits (1028), Expect = 8.4e-108
Identity = 201/209 (96.17%), Postives = 204/209 (97.61%), Query Frame = 0


Query: 1   MALQTYAHSQLSGPHLTALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCSSSDANSNKKG 60
           MALQTYAHSQL GPH TALSSI SSYSTSEIRLPL+STTSRR HLRLVCSSSDANS+KKG
Sbjct: 1   MALQTYAHSQLLGPHPTALSSIHSSYSTSEIRLPLSSTTSRRPHLRLVCSSSDANSSKKG 60

Query: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIP 120
           VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDT+DRSP TFIP
Sbjct: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRSPTTFIP 120

Query: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180
           WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI
Sbjct: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180

Query: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 210
           EDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 209

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BLAST of CsaV3_4G037320 vs. NCBI nr
Match: XP_038897318.1 (DNA repair RAD52-like protein 2, chloroplastic [Benincasa hispida])

HSP 1 Score: 391.3 bits (1004), Expect = 5.1e-105
Identity = 195/209 (93.30%), Postives = 202/209 (96.65%), Query Frame = 0


Query: 1   MALQTYAHSQLSGPHLTALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCSSSDANSNKKG 60
           MALQTYAHSQLS PHL AL S+ SSY+TSEIRLP+ ST SRRR+LRLVCSSSDANS+KKG
Sbjct: 1   MALQTYAHSQLSRPHLPALLSLPSSYTTSEIRLPVISTASRRRYLRLVCSSSDANSSKKG 60

Query: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIP 120
           VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDT+DR+PATFIP
Sbjct: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRAPATFIP 120

Query: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180
           WFHANRMLSFYAPGWCGEIRDVIFSDNG VTVVYRVTVRGSDGEAHRESTGTVSATDSNI
Sbjct: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGGVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180

Query: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 210
           EDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 209

[Close]

BLAST of CsaV3_4G037320 vs. NCBI nr
Match: XP_022940851.1 (DNA repair RAD52-like protein 2, chloroplastic [Cucurbita moschata] >XP_022940852.1 DNA repair RAD52-like protein 2, chloroplastic [Cucurbita moschata] >XP_022940853.1 DNA repair RAD52-like protein 2, chloroplastic [Cucurbita moschata] >KAG6608636.1 DNA repair RAD52-like protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037953.1 DNA repair RAD52-like protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 362.5 bits (929), Expect = 2.5e-96
Identity = 186/209 (89.00%), Postives = 190/209 (90.91%), Query Frame = 0


Query: 1   MALQTYAHSQLSGPHLTALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCSSSDANSNKKG 60
           MALQTYAHSQL GP L A S + SSYS SEIRLP  ST + RRHL LVCSSSDA S KKG
Sbjct: 1   MALQTYAHSQLLGPRLPAFSFLPSSYSVSEIRLPQISTAT-RRHLHLVCSSSDA-SGKKG 60

Query: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIP 120
           VPN+NYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIA K PHSD  +R PATFIP
Sbjct: 61  VPNTNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAPKVPHSDPQNRPPATFIP 120

Query: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180
           WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI
Sbjct: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180

Query: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 210
           EDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 207

[Close]

BLAST of CsaV3_4G037320 vs. NCBI nr
Match: XP_023522333.1 (DNA repair RAD52-like protein 2, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023522340.1 DNA repair RAD52-like protein 2, chloroplastic [Cucurbita pepo subsp. pepo] >XP_023522347.1 DNA repair RAD52-like protein 2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 359.4 bits (921), Expect = 2.1e-95
Identity = 185/209 (88.52%), Postives = 189/209 (90.43%), Query Frame = 0


Query: 1   MALQTYAHSQLSGPHLTALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCSSSDANSNKKG 60
           MALQTYAHSQL GP L A S + SSYS SEIRLP  ST + RRHL LVCSSSDA S KKG
Sbjct: 1   MALQTYAHSQLLGPRLPAFSFLPSSYSVSEIRLPQISTAT-RRHLHLVCSSSDA-SGKKG 60

Query: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIP 120
           VPN+NYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIA K P SD  +R PATFIP
Sbjct: 61  VPNTNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAPKVPQSDPQNRPPATFIP 120

Query: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180
           WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI
Sbjct: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180

Query: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 210
           EDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 207

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BLAST of CsaV3_4G037320 vs. ExPASy Swiss-Prot
Match: Q9FIJ4 (DNA repair RAD52-like protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RAD52-2 PE=1 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 5.2e-60
Identity = 121/196 (61.73%), Postives = 148/196 (75.51%), Query Frame = 0


Query: 17  TALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCSSSDAN----SNKKGVPNSNYVVPLNK 76
           T+ +  +SS ST+  R+ L+   +   +  + CS           KK VPNSNYVVP++K
Sbjct: 8   TSAAFTISSPSTAAARIKLSPFRTVAVNRGVRCSGGGVGGGDAGKKKAVPNSNYVVPIDK 67

Query: 77  SFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIPWFHANRMLSFYA 136
               ++SS ITRPL EILRDLNK+IPDNI  K+    +   + + FIPW+HANRMLSFYA
Sbjct: 68  F---SSSSSITRPLIEILRDLNKKIPDNIV-KSHDPPSTSAATSGFIPWYHANRMLSFYA 127

Query: 137 PGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNIEDPVAAAEEIAF 196
           PGWCGE+RDVIFS+NG+VTVVYR+T+RGSDGEAHRESTGTV+ TD +IEDPV AAEEIAF
Sbjct: 128 PGWCGEVRDVIFSENGNVTVVYRLTIRGSDGEAHRESTGTVTTTDDHIEDPVTAAEEIAF 187

Query: 197 CKACARFGLGLYLYHE 209
           C+ACARFGLGLYLYHE
Sbjct: 188 CRACARFGLGLYLYHE 199

[Close]

BLAST of CsaV3_4G037320 vs. ExPASy Swiss-Prot
Match: Q9FVV7 (DNA repair RAD52-like protein 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RAD52-1 PE=1 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.3e-30
Identity = 66/132 (50.00%), Postives = 90/132 (68.18%), Query Frame = 0


Query: 79  SSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIPWFHANRMLSFYAPGWCGE 138
           +S I+RPLAEIL++LNK++PD++ +    +   D     +IPW   NR+++ +AP W GE
Sbjct: 47  TSGISRPLAEILKELNKKVPDSVIR----TRVEDGCSIKYIPWHIVNRIMNMHAPEWSGE 106

Query: 139 IRDVIFS-DNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNIEDPVAAAEEIAFCKACA 198
           +R V +S D  +VTV YRVT+ G+D E  RESTGT S  D    D V  AE +AF +ACA
Sbjct: 107 VRSVTYSPDGNTVTVAYRVTLYGTDAEIFRESTGTTSVDDKGYGDAVQKAEAMAFRRACA 166

Query: 199 RFGLGLYLYHEE 210
           RFGLGL+LYHE+
Sbjct: 167 RFGLGLHLYHED 174

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BLAST of CsaV3_4G037320 vs. ExPASy TrEMBL
Match: A0A0A0L5X0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G663650 PE=4 SV=1)

HSP 1 Score: 417.9 bits (1073), Expect = 2.5e-113
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0


Query: 1   MALQTYAHSQLSGPHLTALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCSSSDANSNKKG 60
           MALQTYAHSQLSGPHLTALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCSSSDANSNKKG
Sbjct: 1   MALQTYAHSQLSGPHLTALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCSSSDANSNKKG 60

Query: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIP 120
           VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIP
Sbjct: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIP 120

Query: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180
           WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI
Sbjct: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180

Query: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 210
           EDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 209

[Close]

BLAST of CsaV3_4G037320 vs. ExPASy TrEMBL
Match: A0A1S4DZ99 (uncharacterized protein LOC103493818 OS=Cucumis melo OX=3656 GN=LOC103493818 PE=4 SV=1)

HSP 1 Score: 400.6 bits (1028), Expect = 4.1e-108
Identity = 201/209 (96.17%), Postives = 204/209 (97.61%), Query Frame = 0


Query: 1   MALQTYAHSQLSGPHLTALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCSSSDANSNKKG 60
           MALQTYAHSQL GPH TALSSI SSYSTSEIRLPL+STTSRR HLRLVCSSSDANS+KKG
Sbjct: 1   MALQTYAHSQLLGPHPTALSSIHSSYSTSEIRLPLSSTTSRRPHLRLVCSSSDANSSKKG 60

Query: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIP 120
           VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDT+DRSP TFIP
Sbjct: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRSPTTFIP 120

Query: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180
           WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI
Sbjct: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180

Query: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 210
           EDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 209

[Close]

BLAST of CsaV3_4G037320 vs. ExPASy TrEMBL
Match: A0A5A7VFI5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00600 PE=4 SV=1)

HSP 1 Score: 400.6 bits (1028), Expect = 4.1e-108
Identity = 201/209 (96.17%), Postives = 204/209 (97.61%), Query Frame = 0


Query: 1   MALQTYAHSQLSGPHLTALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCSSSDANSNKKG 60
           MALQTYAHSQL GPH TALSSI SSYSTSEIRLPL+STTSRR HLRLVCSSSDANS+KKG
Sbjct: 1   MALQTYAHSQLLGPHPTALSSIHSSYSTSEIRLPLSSTTSRRPHLRLVCSSSDANSSKKG 60

Query: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIP 120
           VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDT+DRSP TFIP
Sbjct: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTHDRSPTTFIP 120

Query: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180
           WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI
Sbjct: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180

Query: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 210
           EDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 209

[Close]

BLAST of CsaV3_4G037320 vs. ExPASy TrEMBL
Match: A0A6J1FJJ9 (DNA repair RAD52-like protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111446320 PE=4 SV=1)

HSP 1 Score: 362.5 bits (929), Expect = 1.2e-96
Identity = 186/209 (89.00%), Postives = 190/209 (90.91%), Query Frame = 0


Query: 1   MALQTYAHSQLSGPHLTALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCSSSDANSNKKG 60
           MALQTYAHSQL GP L A S + SSYS SEIRLP  ST + RRHL LVCSSSDA S KKG
Sbjct: 1   MALQTYAHSQLLGPRLPAFSFLPSSYSVSEIRLPQISTAT-RRHLHLVCSSSDA-SGKKG 60

Query: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIP 120
           VPN+NYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIA K PHSD  +R PATFIP
Sbjct: 61  VPNTNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAPKVPHSDPQNRPPATFIP 120

Query: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180
           WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI
Sbjct: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180

Query: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 210
           EDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 207

[Close]

BLAST of CsaV3_4G037320 vs. ExPASy TrEMBL
Match: A0A6J1J3T8 (DNA repair RAD52-like protein 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481079 PE=4 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 2.0e-94
Identity = 182/209 (87.08%), Postives = 188/209 (89.95%), Query Frame = 0


Query: 1   MALQTYAHSQLSGPHLTALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCSSSDANSNKKG 60
           MALQTYAH QL GP L A S + SSYS SEIRLP  ST + RRHL LVCSSS+A S KKG
Sbjct: 1   MALQTYAHFQLLGPRLPAFSFLPSSYSVSEIRLPQISTAT-RRHLHLVCSSSEA-SGKKG 60

Query: 61  VPNSNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIP 120
           VPN+NYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIA K P SD  +R PATFIP
Sbjct: 61  VPNTNYVVPLNKSFSPANSSCITRPLAEILRDLNKRIPDNIAPKVPQSDPQNRPPATFIP 120

Query: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNI 180
           WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSN+
Sbjct: 121 WFHANRMLSFYAPGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNV 180

Query: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 210
           EDPVAAAEEIAFCKACARFGLGLYLYHEE
Sbjct: 181 EDPVAAAEEIAFCKACARFGLGLYLYHEE 207

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BLAST of CsaV3_4G037320 vs. TAIR 10
Match: AT5G47870.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: cobalt ion binding (TAIR:AT1G71310.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 232.3 bits (591), Expect = 3.7e-61
Identity = 121/196 (61.73%), Postives = 148/196 (75.51%), Query Frame = 0


Query: 17  TALSSILSSYSTSEIRLPLTSTTSRRRHLRLVCSSSDAN----SNKKGVPNSNYVVPLNK 76
           T+ +  +SS ST+  R+ L+   +   +  + CS           KK VPNSNYVVP++K
Sbjct: 8   TSAAFTISSPSTAAARIKLSPFRTVAVNRGVRCSGGGVGGGDAGKKKAVPNSNYVVPIDK 67

Query: 77  SFSPANSSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIPWFHANRMLSFYA 136
               ++SS ITRPL EILRDLNK+IPDNI  K+    +   + + FIPW+HANRMLSFYA
Sbjct: 68  F---SSSSSITRPLIEILRDLNKKIPDNIV-KSHDPPSTSAATSGFIPWYHANRMLSFYA 127

Query: 137 PGWCGEIRDVIFSDNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNIEDPVAAAEEIAF 196
           PGWCGE+RDVIFS+NG+VTVVYR+T+RGSDGEAHRESTGTV+ TD +IEDPV AAEEIAF
Sbjct: 128 PGWCGEVRDVIFSENGNVTVVYRLTIRGSDGEAHRESTGTVTTTDDHIEDPVTAAEEIAF 187

Query: 197 CKACARFGLGLYLYHE 209
           C+ACARFGLGLYLYHE
Sbjct: 188 CRACARFGLGLYLYHE 199

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BLAST of CsaV3_4G037320 vs. TAIR 10
Match: AT1G71310.2 (cobalt ion binding )

HSP 1 Score: 133.3 bits (334), Expect = 2.3e-31
Identity = 66/132 (50.00%), Postives = 90/132 (68.18%), Query Frame = 0


Query: 79  SSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIPWFHANRMLSFYAPGWCGE 138
           +S I+RPLAEIL++LNK++PD++ +    +   D     +IPW   NR+++ +AP W GE
Sbjct: 47  TSGISRPLAEILKELNKKVPDSVIR----TRVEDGCSIKYIPWHIVNRIMNMHAPEWSGE 106

Query: 139 IRDVIFS-DNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNIEDPVAAAEEIAFCKACA 198
           +R V +S D  +VTV YRVT+ G+D E  RESTGT S  D    D V  AE +AF +ACA
Sbjct: 107 VRSVTYSPDGNTVTVAYRVTLYGTDAEIFRESTGTTSVDDKGYGDAVQKAEAMAFRRACA 166

Query: 199 RFGLGLYLYHEE 210
           RFGLGL+LYHE+
Sbjct: 167 RFGLGLHLYHED 174

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BLAST of CsaV3_4G037320 vs. TAIR 10
Match: AT1G71310.1 (cobalt ion binding )

HSP 1 Score: 133.3 bits (334), Expect = 2.3e-31
Identity = 66/132 (50.00%), Postives = 90/132 (68.18%), Query Frame = 0


Query: 79  SSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIPWFHANRMLSFYAPGWCGE 138
           +S I+RPLAEIL++LNK++PD++ +    +   D     +IPW   NR+++ +AP W GE
Sbjct: 47  TSGISRPLAEILKELNKKVPDSVIR----TRVEDGCSIKYIPWHIVNRIMNMHAPEWSGE 106

Query: 139 IRDVIFS-DNGSVTVVYRVTVRGSDGEAHRESTGTVSATDSNIEDPVAAAEEIAFCKACA 198
           +R V +S D  +VTV YRVT+ G+D E  RESTGT S  D    D V  AE +AF +ACA
Sbjct: 107 VRSVTYSPDGNTVTVAYRVTLYGTDAEIFRESTGTTSVDDKGYGDAVQKAEAMAFRRACA 166

Query: 199 RFGLGLYLYHEE 210
           RFGLGL+LYHE+
Sbjct: 167 RFGLGLHLYHED 174

[Close]

BLAST of CsaV3_4G037320 vs. TAIR 10
Match: AT1G71310.3 (cobalt ion binding )

HSP 1 Score: 82.0 bits (201), Expect = 6.1e-16
Identity = 39/87 (44.83%), Postives = 59/87 (67.82%), Query Frame = 0


Query: 79  SSCITRPLAEILRDLNKRIPDNIAQKAPHSDTNDRSPATFIPWFHANRMLSFYAPGWCGE 138
           +S I+RPLAEIL++LNK++PD++ +    +   D     +IPW   NR+++ +AP W GE
Sbjct: 47  TSGISRPLAEILKELNKKVPDSVIR----TRVEDGCSIKYIPWHIVNRIMNMHAPEWSGE 106

Query: 139 IRDVIFS-DNGSVTVVYRVTVRGSDGE 165
           +R V +S D  +VTV YRVT+ G+D E
Sbjct: 107 VRSVTYSPDGNTVTVAYRVTLYGTDAE 129

The following BLAST results are available for this feature:

BLAST of CsaV3_4G037320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145544.1	5.1e-113	100.00	DNA repair RAD52-like protein 2, chloroplastic [Cucumis sativus] >XP_031740574.1...	[more]
XP_008452970.1	8.4e-108	96.17	PREDICTED: uncharacterized protein LOC103493818 [Cucumis melo] >XP_016901316.1 P...	[more]
XP_038897318.1	5.1e-105	93.30	DNA repair RAD52-like protein 2, chloroplastic [Benincasa hispida]	[more]
XP_022940851.1	2.5e-96	89.00	DNA repair RAD52-like protein 2, chloroplastic [Cucurbita moschata] >XP_02294085...	[more]
XP_023522333.1	2.1e-95	88.52	DNA repair RAD52-like protein 2, chloroplastic [Cucurbita pepo subsp. pepo] >XP_...	[more]

BLAST of CsaV3_4G037320 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FIJ4	5.2e-60	61.73	DNA repair RAD52-like protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9FVV7	3.3e-30	50.00	DNA repair RAD52-like protein 1, mitochondrial OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of CsaV3_4G037320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5X0	2.5e-113	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G663650 PE=4 SV=1	[more]
A0A1S4DZ99	4.1e-108	96.17	uncharacterized protein LOC103493818 OS=Cucumis melo OX=3656 GN=LOC103493818 PE=...	[more]
A0A5A7VFI5	4.1e-108	96.17	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1FJJ9	1.2e-96	89.00	DNA repair RAD52-like protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1J3T8	2.0e-94	87.08	DNA repair RAD52-like protein 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of CsaV3_4G037320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G47870.1	3.7e-61	61.73	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G71310.2	2.3e-31	50.00	cobalt ion binding	[more]
AT1G71310.1	2.3e-31	50.00	cobalt ion binding	[more]
AT1G71310.3	6.1e-16	44.83	cobalt ion binding	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34050:SF3	DNA REPAIR RAD52-LIKE PROTEIN 2, CHLOROPLASTIC	coord: 49..209
IPR037489	DNA repair RAD52-like protein	PANTHER	PTHR34050	FAMILY NOT NAMED	coord: 49..209

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G037320.1	CsaV3_4G037320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000724	double-strand break repair via homologous recombination
molecular_function	GO:0003677	DNA binding