CsaV3_4G037000 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G037000
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	high mobility group B protein 9
Location	chr4: 25980637 .. 25983088 (-)
RNA-Seq Expression	CsaV3_4G037000
Synteny	CsaV3_4G037000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCCTTTTTGTTCACTGGTCTTTGCCCAAATTCTTCTCAGAAAAAGCCAATTCTGCACAACAGTTGCCTTTCACGCTTCCAACCATCTTCTTTAATTCCAGCTTCCTCTCTTCTCTCTCTCTTCTTTCAATTTAATTACTTTATCTTGGAAATCATATGTTCTTTAATACCATCATTACTTTTTCTCTTTCCTTTCTTCTTCACTCACTTTCTCTCACTCTCCTTCTTCCTTCTTTTTTTTTTTTCTCTGTTCTTTTTTTTTTCCAGCCATGTCACCGCCGGCCAGAACCAAAACATGGAACGGTGGCCTCGATAAGCATTATCCACCCTCACTTGCTACACATGATGAAGTTATCTCCGACCCCATTGTTTTTTGGGACACTTTGCGCCGTTTCCATTTTATGATGAACACAAAGTTCATGTGAGTATTTTTGTTCTTTTCTAAAGCTTCATAATATGATATTAATGGCGGCTACATAACCAAAAGACACTATACTTTTACACTTTTACACTTTTTTCACTTCCTCTGTTTACTAATGGCTACTTTTCTCTTTACTCGTTGAATATTATAAAGGATTCCTGTGATTGGAGGGAAGGAACTAGACTTGCATGTTTTATATTCAGAAGTTACAAGAAGAGGAGGGCATGAAAAAGTAAGTTTCGGGGGTTGGGGTTTTGGTTTTAATGAAGCTTTTTGACTCTGTTTTTTTTGTTTAATGGCGGATTTAGGTTGTTGCAGAGAAGAAATGGAGAGAAGTTGGAAGTGTTTTTAAATTTTCTCCTACAACTACAAGTGCTTCATTTGTATTGAGAAAACATTATCTAAGTCTTCTTTACCATTACGAGCAAGTTTATTTGTTCGGCCGGCAAGGCCCCATTTGTGTCCCTCAAGGTCCCTTTTTTTTTTCCCTCTTCTTTCATTTATCCATTCTTTTTTCCACATTGGATTTTTTGAAAATCTGATTTGGCTTTTGTCTTTCTACTACAGCACCATTTCCTTTTGGTAGCCCTACCAGTGAAAACGAATTGGCTCTAGTGGAATATACTCCCAAAACTACGTCGTTTTCCCCTGGTCCTCCTTCTGAAGGTGACAAACCCTCCCTTTTTTTTTTTCACTTCATTCACTTCTTTTAATTCCCCTTCGTGGGGTCAAGCAGTAAAAGCTCAACAGTTCTCCACCAATGCCTTGGCTTTTCTATATAACTGAACTTGTTCAACAAATTATTGCCACTCTGACCATTTTTTTTTTCTAAAAGAAAATTTCTCTTTTTGGGCTTATGTATATTACTTGTTTTTTTCAGTTACCGGAACAATTGATGGCAAATTCGACTGTGGTTATCTTGTAACTGTGAAATTGGGATCTGAGGTTTTAAGAGGAGTTCTTTACCATCCAGATCAGCCACCTCCCTCTGATCTCCGACCTCTATCTACCAACGCCATTGTACCGTATACCGGTGGGAGATATCGACATTCAGGTCGACGGCACCGGCGGAGCCGGAGAAAGGGAGACCCGAATCATCCAAAACCGAATAGAAGTGGGTACAATTTCTTCTTTGCTGAGAAGCATTATAAGCTTAAATCTCTGTATCCAAACAGAGAGAGGGAGTTCACTAAGATGATTGGAGAGTCTTGGAATAATCTTAGCCCTGAAGAAAGGATGGTATGTATGTGTTTCATCAATCATTCTTTTTTGTCTCTCTCTTTAGTTTAAAGAGTCATAAAGTGATTTTGTTGATTTAATTTGTGTTATAGGTTTATCAGAACATTGGGTTGAAAGATAAGGAAAGATACAGGAGAGAGTTGAAGGAGTATAAGGAGAAAATGAGGCTGGGAACAGAAGTTGATGGAGCTAACTATTCAAAACATGGAGACTAGTAGTAACACAAAGGAGGATGAAAATTCAGCAGTCTATTTTTAGGTTTTTTTTTTTGGGGATCTGCTAAATTTAATATGATATATAGATTTTGTATCATATCATATTTATATCCTCCTAACTTTACATGGCAAAACATAGGTTCTCTCATATCTATAGTGCTTGCCCACAAGATTTTACAGTCACTTACAAAAGTTCACTATTGGAACACTGCCATTTTTTATGGTTTTGCTTTAAAAACCATTTACATCGACCAAAGTTCAAGAAGGTTCATTCATTATAGACACCTTCAAATCTTGAAGAACATAAGATGTTGTGAAGACCCTTCCATTAGAGGATTGAAGAAGCCAATTAATTGAGGTTGAGAAGAGAGGCTTCATCAGTATTAAAATATGGTTAATTTATTAAAAACATAAAACAATGTAAAGTTGCATTATTACATCCGACTTTACATCGGCGTAGAATTTGTTAGGGATTGCAAGAAATTAAAAATGATGAGATTTGAAATTTTGGTTTATGTCATAATGTTATTTGGTATTCTTAAGAACATACTGTTGGTGCTAAGTTTCAAATTATTAA

mRNA sequence

ATGTCACCGCCGGCCAGAACCAAAACATGGAACGGTGGCCTCGATAAGCATTATCCACCCTCACTTGCTACACATGATGAAGTTATCTCCGACCCCATTGTTTTTTGGGACACTTTGCGCCGTTTCCATTTTATGATGAACACAAAGTTCATGATTCCTGTGATTGGAGGGAAGGAACTAGACTTGCATGTTTTATATTCAGAAGTTACAAGAAGAGGAGGGCATGAAAAAGTTGTTGCAGAGAAGAAATGGAGAGAAGTTGGAAGTGTTTTTAAATTTTCTCCTACAACTACAAGTGCTTCATTTGTATTGAGAAAACATTATCTAAGTCTTCTTTACCATTACGAGCAAGTTTATTTGTTCGGCCGGCAAGGCCCCATTTGTGTCCCTCAAGCACCATTTCCTTTTGGTAGCCCTACCAGTGAAAACGAATTGGCTCTAGTGGAATATACTCCCAAAACTACGTCGTTTTCCCCTGGTCCTCCTTCTGAAGTTACCGGAACAATTGATGGCAAATTCGACTGTGGTTATCTTGTAACTGTGAAATTGGGATCTGAGGTTTTAAGAGGAGTTCTTTACCATCCAGATCAGCCACCTCCCTCTGATCTCCGACCTCTATCTACCAACGCCATTGTACCGTATACCGGTGGGAGATATCGACATTCAGGTCGACGGCACCGGCGGAGCCGGAGAAAGGGAGACCCGAATCATCCAAAACCGAATAGAAGTGGGTACAATTTCTTCTTTGCTGAGAAGCATTATAAGCTTAAATCTCTGTATCCAAACAGAGAGAGGGAGTTCACTAAGATGATTGGAGAGTCTTGGAATAATCTTAGCCCTGAAGAAAGGATGGTTTATCAGAACATTGGGTTGAAAGATAAGGAAAGATACAGGAGAGAGTTGAAGGAGTATAAGGAGAAAATGAGGCTGGGAACAGAAGTTGATGGAGCTAACTATTCAAAACATGGAGACTAG

Coding sequence (CDS)

ATGTCACCGCCGGCCAGAACCAAAACATGGAACGGTGGCCTCGATAAGCATTATCCACCCTCACTTGCTACACATGATGAAGTTATCTCCGACCCCATTGTTTTTTGGGACACTTTGCGCCGTTTCCATTTTATGATGAACACAAAGTTCATGATTCCTGTGATTGGAGGGAAGGAACTAGACTTGCATGTTTTATATTCAGAAGTTACAAGAAGAGGAGGGCATGAAAAAGTTGTTGCAGAGAAGAAATGGAGAGAAGTTGGAAGTGTTTTTAAATTTTCTCCTACAACTACAAGTGCTTCATTTGTATTGAGAAAACATTATCTAAGTCTTCTTTACCATTACGAGCAAGTTTATTTGTTCGGCCGGCAAGGCCCCATTTGTGTCCCTCAAGCACCATTTCCTTTTGGTAGCCCTACCAGTGAAAACGAATTGGCTCTAGTGGAATATACTCCCAAAACTACGTCGTTTTCCCCTGGTCCTCCTTCTGAAGTTACCGGAACAATTGATGGCAAATTCGACTGTGGTTATCTTGTAACTGTGAAATTGGGATCTGAGGTTTTAAGAGGAGTTCTTTACCATCCAGATCAGCCACCTCCCTCTGATCTCCGACCTCTATCTACCAACGCCATTGTACCGTATACCGGTGGGAGATATCGACATTCAGGTCGACGGCACCGGCGGAGCCGGAGAAAGGGAGACCCGAATCATCCAAAACCGAATAGAAGTGGGTACAATTTCTTCTTTGCTGAGAAGCATTATAAGCTTAAATCTCTGTATCCAAACAGAGAGAGGGAGTTCACTAAGATGATTGGAGAGTCTTGGAATAATCTTAGCCCTGAAGAAAGGATGGTTTATCAGAACATTGGGTTGAAAGATAAGGAAAGATACAGGAGAGAGTTGAAGGAGTATAAGGAGAAAATGAGGCTGGGAACAGAAGTTGATGGAGCTAACTATTCAAAACATGGAGACTAG

Protein sequence

MSPPARTKTWNGGLDKHYPPSLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICVPQAPFPFGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVTVKLGSEVLRGVLYHPDQPPPSDLRPLSTNAIVPYTGGRYRHSGRRHRRSRRKGDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRELKEYKEKMRLGTEVDGANYSKHGD*

Homology

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BLAST of CsaV3_4G037000 vs. NCBI nr
Match: XP_004145526.1 (high mobility group B protein 9 [Cucumis sativus] >KGN55473.1 hypothetical protein Csa_011977 [Cucumis sativus])

HSP 1 Score: 678.3 bits (1749), Expect = 3.2e-191
Identity = 324/324 (100.00%), Postives = 324/324 (100.00%), Query Frame = 0


Query: 1   MSPPARTKTWNGGLDKHYPPSLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 60
           MSPPARTKTWNGGLDKHYPPSLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL
Sbjct: 1   MSPPARTKTWNGGLDKHYPPSLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 60

Query: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120
           DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL
Sbjct: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120

Query: 121 FGRQGPICVPQAPFPFGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVT 180
           FGRQGPICVPQAPFPFGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVT
Sbjct: 121 FGRQGPICVPQAPFPFGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVT 180

Query: 181 VKLGSEVLRGVLYHPDQPPPSDLRPLSTNAIVPYTGGRYRHSGRRHRRSRRKGDPNHPKP 240
           VKLGSEVLRGVLYHPDQPPPSDLRPLSTNAIVPYTGGRYRHSGRRHRRSRRKGDPNHPKP
Sbjct: 181 VKLGSEVLRGVLYHPDQPPPSDLRPLSTNAIVPYTGGRYRHSGRRHRRSRRKGDPNHPKP 240

Query: 241 NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRE 300
           NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRE
Sbjct: 241 NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRE 300

Query: 301 LKEYKEKMRLGTEVDGANYSKHGD 325
           LKEYKEKMRLGTEVDGANYSKHGD
Sbjct: 301 LKEYKEKMRLGTEVDGANYSKHGD 324

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BLAST of CsaV3_4G037000 vs. NCBI nr
Match: XP_008452910.1 (PREDICTED: high mobility group B protein 9 [Cucumis melo] >ADN34129.1 high mobility group family [Cucumis melo subsp. melo] >KAA0064618.1 high mobility group B protein 9 [Cucumis melo var. makuwa])

HSP 1 Score: 667.9 bits (1722), Expect = 4.4e-188
Identity = 318/324 (98.15%), Postives = 322/324 (99.38%), Query Frame = 0


Query: 1   MSPPARTKTWNGGLDKHYPPSLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 60
           MSPPARTKTWNGGLDKHYPP LATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL
Sbjct: 1   MSPPARTKTWNGGLDKHYPPPLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 60

Query: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120
           DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL
Sbjct: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120

Query: 121 FGRQGPICVPQAPFPFGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVT 180
           FGRQGPICVPQAPF FGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVT
Sbjct: 121 FGRQGPICVPQAPFSFGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVT 180

Query: 181 VKLGSEVLRGVLYHPDQPPPSDLRPLSTNAIVPYTGGRYRHSGRRHRRSRRKGDPNHPKP 240
           VKLGSEVLRGVLYHP+QPPPSDLRPLSTNAIVPYTGGR+RHSGRRHRRSRRKGDPNHPKP
Sbjct: 181 VKLGSEVLRGVLYHPEQPPPSDLRPLSTNAIVPYTGGRHRHSGRRHRRSRRKGDPNHPKP 240

Query: 241 NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRE 300
           NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRE
Sbjct: 241 NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRE 300

Query: 301 LKEYKEKMRLGTEVDGANYSKHGD 325
           LKEYKEKMR+GT+VDGANYSKHGD
Sbjct: 301 LKEYKEKMRMGTDVDGANYSKHGD 324

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BLAST of CsaV3_4G037000 vs. NCBI nr
Match: XP_038899499.1 (high mobility group B protein 9-like [Benincasa hispida])

HSP 1 Score: 644.0 bits (1660), Expect = 6.7e-181
Identity = 307/324 (94.75%), Postives = 315/324 (97.22%), Query Frame = 0


Query: 1   MSPPARTKTWNGGLDKHYPPSLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 60
           MSPPA TK+WNGGLDKHYPP LATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL
Sbjct: 39  MSPPATTKSWNGGLDKHYPPPLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 98

Query: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120
           DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL
Sbjct: 99  DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 158

Query: 121 FGRQGPICVPQAPFPFGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVT 180
           FGRQGPICVPQAPFP GSPTSENELALVEYTPKTTSFSPGPP+EVTGTIDGKFDCGYLVT
Sbjct: 159 FGRQGPICVPQAPFPLGSPTSENELALVEYTPKTTSFSPGPPAEVTGTIDGKFDCGYLVT 218

Query: 181 VKLGSEVLRGVLYHPDQPPPSDLRPLSTNAIVPYTGGRYRHSGRRHRRSRRKGDPNHPKP 240
           VKLGSE+LRGVLYHP+QPPPSDLRP STNAIVPYTGGRYRHSGRRHRRSRRKGDPNHPKP
Sbjct: 219 VKLGSEILRGVLYHPEQPPPSDLRPQSTNAIVPYTGGRYRHSGRRHRRSRRKGDPNHPKP 278

Query: 241 NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRE 300
           NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEER VYQNIGLKDKERY+RE
Sbjct: 279 NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERTVYQNIGLKDKERYKRE 338

Query: 301 LKEYKEKMRLGTEVDGANYSKHGD 325
           LKEYKEKMR  ++VDG  YSKHG+
Sbjct: 339 LKEYKEKMRQASDVDGV-YSKHGE 361

[Close]

BLAST of CsaV3_4G037000 vs. NCBI nr
Match: XP_022140929.1 (high mobility group B protein 9 [Momordica charantia])

HSP 1 Score: 624.8 bits (1610), Expect = 4.2e-175
Identity = 298/324 (91.98%), Postives = 309/324 (95.37%), Query Frame = 0


Query: 1   MSPPARTKTWNGGLDKHYPPSLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 60
           MSPPAR+K+WN G DKHYP +LATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL
Sbjct: 40  MSPPARSKSWNAGQDKHYPRALATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 99

Query: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120
           DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL
Sbjct: 100 DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 159

Query: 121 FGRQGPICVPQAPFPFGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVT 180
           F RQGPICVPQAPF FGSP+SENELALVEYTPKTTSFSPGPP+EVTGTIDGKFDCGYLVT
Sbjct: 160 FSRQGPICVPQAPFSFGSPSSENELALVEYTPKTTSFSPGPPAEVTGTIDGKFDCGYLVT 219

Query: 181 VKLGSEVLRGVLYHPDQPPPSDLRPLSTNAIVPYTGGRYRHSGRRHRRSRRKGDPNHPKP 240
           VKLGSEVLRGVLYHP+QP PS+LRP S NAIVPYTGGR RHSGRRHRRSRRKGDPNHPKP
Sbjct: 220 VKLGSEVLRGVLYHPEQPSPSNLRPQSINAIVPYTGGRLRHSGRRHRRSRRKGDPNHPKP 279

Query: 241 NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRE 300
           NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEER VYQNIGLKDKERY+RE
Sbjct: 280 NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERTVYQNIGLKDKERYKRE 339

Query: 301 LKEYKEKMRLGTEVDGANYSKHGD 325
           LKEYKEKMR  T++   NYSKHG+
Sbjct: 340 LKEYKEKMRQATDIHEPNYSKHGE 363

[Close]

BLAST of CsaV3_4G037000 vs. NCBI nr
Match: XP_022975460.1 (high mobility group B protein 9 isoform X2 [Cucurbita maxima])

HSP 1 Score: 615.1 bits (1585), Expect = 3.4e-172
Identity = 297/325 (91.38%), Postives = 309/325 (95.08%), Query Frame = 0


Query: 1   MSPPARTKTWNGGLDKHYPPSLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 60
           MSPPARTK+ NGG+DK YPP LATHDEV+SDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL
Sbjct: 1   MSPPARTKSGNGGVDKQYPPPLATHDEVVSDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 60

Query: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120
           DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL
Sbjct: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120

Query: 121 FGRQGPICVPQAPFPFGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVT 180
           F RQGPI  PQAPF FGSPTSENELALVEYTPKTTSFSPGPP+EVTGTIDGKFDCGYLV+
Sbjct: 121 FRRQGPIYAPQAPFSFGSPTSENELALVEYTPKTTSFSPGPPAEVTGTIDGKFDCGYLVS 180

Query: 181 VKLGSEVLRGVLYHPDQPPPSDLRPLSTNAIVPYTGGRYRHSGRRHRRSRRKGDPNHPKP 240
           VKLGSEVLRGVLYHP++P PSDLRP  TNAIVPYTG R+RHSGRRHRRSRRKGDPNHPKP
Sbjct: 181 VKLGSEVLRGVLYHPEEPTPSDLRPQPTNAIVPYTGTRHRHSGRRHRRSRRKGDPNHPKP 240

Query: 241 NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRE 300
           NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERY+RE
Sbjct: 241 NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYKRE 300

Query: 301 LKEYKEKMRLGT-EVDGANYSKHGD 325
           LKEYKEKMRL + +V  ANYSK G+
Sbjct: 301 LKEYKEKMRLASDDVHAANYSKQGE 325

[Close]

BLAST of CsaV3_4G037000 vs. ExPASy Swiss-Prot
Match: Q9SGS2 (High mobility group B protein 9 OS=Arabidopsis thaliana OX=3702 GN=HMGB9 PE=1 SV=1)

HSP 1 Score: 406.4 bits (1043), Expect = 3.1e-112
Identity = 210/305 (68.85%), Postives = 243/305 (79.67%), Query Frame = 0


Query: 16  KHYPPSLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGGH 75
           K YP  LA H+ V+ D  VFWDTLRRFH +M+TKFMIPVIGGKELDLHVLY EVTRRGG+
Sbjct: 25  KEYPEPLALHEVVVKDSSVFWDTLRRFHSIMSTKFMIPVIGGKELDLHVLYVEVTRRGGY 84

Query: 76  EKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICVPQAPFP 135
           EKVV EKKWREVG VF+FS TTTSASFVLRKHYL+LL+HYEQV+LF  +GP+  P A F 
Sbjct: 85  EKVVVEKKWREVGGVFRFSATTTSASFVLRKHYLNLLFHYEQVHLFTARGPLLHPIATF- 144

Query: 136 FGSPTSENELALVEYTPKTTSF-SPGPPSE------VTGTIDGKFDCGYLVTVKLGSEVL 195
             +P++  E+ALVEYTP +  + +  PPS+        GTI+GKFDCGYLV VKLGSE+L
Sbjct: 145 HANPSTSKEMALVEYTPPSIRYHNTHPPSQGSSSFTAIGTIEGKFDCGYLVKVKLGSEIL 204

Query: 196 RGVLYHPDQP-PPSDLRPLSTNAIVPY--TGGRYRHSGRRHRRSRRKGDPNHPKPNRSGY 255
            GVLYH  QP P S    +  NA+VPY  TG R R  G+R RRSRR+ DPN+PKPNRSGY
Sbjct: 205 NGVLYHSAQPGPSSSPTAVLNNAVVPYVETGRRRRRLGKR-RRSRRREDPNYPKPNRSGY 264

Query: 256 NFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRELKEYK 311
           NFFFAEKH KLKSLYPN+EREFTK+IGESW+NLS EERMVYQ+IGLKDKERY+REL EY+
Sbjct: 265 NFFFAEKHCKLKSLYPNKEREFTKLIGESWSNLSTEERMVYQDIGLKDKERYQRELNEYR 324

[Close]

BLAST of CsaV3_4G037000 vs. ExPASy Swiss-Prot
Match: Q9MAT6 (High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 1.5e-69
Identity = 140/320 (43.75%), Postives = 200/320 (62.50%), Query Frame = 0


Query: 23  ATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVAEK 82
           AT++ V++DP +F  +L R H ++ TKFM+P+IGG++LDLH L+ EVT RGG  K++ E+
Sbjct: 23  ATYEAVVADPRLFMTSLERLHSLLGTKFMVPIIGGRDLDLHKLFVEVTSRGGINKILNER 82

Query: 83  KWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICVPQAPFPFGSP--- 142
           +W+EV + F F PT T+AS+VLRK+Y SLL +YEQ+Y F   G I       P   P   
Sbjct: 83  RWKEVTATFVFPPTATNASYVLRKYYFSLLNNYEQIYFFRSNGQIPPDSMQSPSARPCFI 142

Query: 143 ----TSENELALVEYTPK----TTSFSPG--PPSEVTGTIDGKFDCGYLVTVKLGSEVLR 202
                   EL  + +TP+    T  F  G    S V G IDGKF+ GYLVTV +GSE L+
Sbjct: 143 QGAIRPSQELQALTFTPQPKINTAEFLGGSLAGSNVVGVIDGKFESGYLVTVTIGSEQLK 202

Query: 203 GVLYH-PDQPPPSDLRPLSTNAIVPYT-----------GGRYRHSGRRHRRSRRKGDPNH 262
           GVLY    Q   S   P  ++ ++P T           GG  +   RR +   ++ DP+H
Sbjct: 203 GVLYQLLPQNTVSYQTPQQSHGVLPNTLNISANPQGVAGGVTKRRRRRKKSEIKRRDPDH 262

Query: 263 PKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERY 318
           PKPNRSGYNFFFAE+H +LK L+P ++R+ ++MIGE WN L+ +E+++YQ   ++DKERY
Sbjct: 263 PKPNRSGYNFFFAEQHARLKPLHPGKDRDISRMIGELWNKLNEDEKLIYQGKAMEDKERY 322

[Close]

BLAST of CsaV3_4G037000 vs. ExPASy Swiss-Prot
Match: Q9LTT3 (High mobility group B protein 10 OS=Arabidopsis thaliana OX=3702 GN=HMGB10 PE=1 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 9.2e-56
Identity = 125/291 (42.96%), Postives = 170/291 (58.42%), Query Frame = 0


Query: 23  ATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVAEK 82
           A +D+++ +  +FW+ LR F  + +    +P +GG  LDLH L+ EVT RGG E+VV ++
Sbjct: 34  AKYDDLVRNSALFWEKLRAFLGLTSKTLKVPTVGGNTLDLHRLFIEVTSRGGIERVVKDR 93

Query: 83  KWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICVPQAPFPFGSPTSE 142
           KW+EV   F F  T TSASFVLRK+YL  L+  E VY    + P+   Q+     +  + 
Sbjct: 94  KWKEVIGAFSFPTTITSASFVLRKYYLKFLFQLEHVYYL--EKPVSSLQS-----TDEAL 153

Query: 143 NELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVTVKLGSEVLRGVLYHPDQPPPSD 202
             LA     P+     P    EV G IDGKFD GYLVT+KLGS+ L+GVLYH  Q P   
Sbjct: 154 KSLANESPNPEEGIDEPQVGYEVQGFIDGKFDSGYLVTMKLGSQELKGVLYHIPQTPSQS 213

Query: 203 LRPLSTNAIVPYTGGRYRHSGRRHRRSRRKG--DPNHPKPNRSGYNFFFAEKHYKLKSLY 262
            + + T + +       + S RRHR+  +    D   PK +RSGYNFFFAE++ +LK  Y
Sbjct: 214 QQTMETPSAI------VQSSQRRHRKKSKLAVVDTQKPKCHRSGYNFFFAEQYARLKPEY 273

Query: 263 PNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRELKEYKEKMRLG 312
             +ER  TK IG  W+NL+  E+ VYQ+ G+KD ERYR E+ EYK     G
Sbjct: 274 HGQERSITKKIGHMWSNLTESEKQVYQDKGVKDVERYRIEMLEYKSSHESG 311

[Close]

BLAST of CsaV3_4G037000 vs. ExPASy Swiss-Prot
Match: Q9LG02 (Putative high mobility group B protein 11 OS=Arabidopsis thaliana OX=3702 GN=HMGB11 PE=1 SV=2)

HSP 1 Score: 176.8 bits (447), Expect = 4.0e-43
Identity = 106/289 (36.68%), Postives = 157/289 (54.33%), Query Frame = 0


Query: 25  HDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVAEKKW 84
           + +++ +P +FW+ LR FH   + KF IP++GGK LDLH L++EVT RGG EKV+ +++ 
Sbjct: 30  YQDIVRNPELFWEMLRDFHESSDKKFKIPIVGGKSLDLHRLFNEVTSRGGLEKVIKDRRC 89

Query: 85  REVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICVPQAPFPFGSPTSENE 144
           +EV   F F  T T+++FVLRK YL +L+ +E +Y F         QAP    S   E E
Sbjct: 90  KEVIDAFNFKTTITNSAFVLRKSYLKMLFEFEHLYYF---------QAPL---STFWEKE 149

Query: 145 LALVEYTPKTT-----SFSPGPPSEVTGTIDGKFDCGYLVTVKLGSEVLRGVLYHPDQPP 204
            AL     K+      S    P + +TG IDGKF+ GYL++ K+GSE L+G+LYH     
Sbjct: 150 KALKLLIEKSANRDKDSQELKPGTVITGIIDGKFESGYLISTKVGSEKLKGMLYH----- 209

Query: 205 PSDLRPLSTNAIVPYTGGRYRHSGRRHRRSRRKGDPNHPKPNRSGYNFFFAEKHYKLKSL 264
                      I P T       G++  +S +      PK  R+GYNFF AE+  ++K+ 
Sbjct: 210 -----------ISPET-----KRGKKKAKSSQGDSHKPPKRQRTGYNFFVAEQSVRIKAE 269

Query: 265 YPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRELKEYKEKM 309
              ++    K  G  W NLS  +R VY     +D +RY+ E+ +Y+  M
Sbjct: 270 NAGQKVSSPKNFGNMWTNLSESDRKVYYEKSREDGKRYKMEILQYRSLM 285

[Close]

BLAST of CsaV3_4G037000 vs. ExPASy Swiss-Prot
Match: Q68CP9 (AT-rich interactive domain-containing protein 2 OS=Homo sapiens OX=9606 GN=ARID2 PE=1 SV=2)

HSP 1 Score: 83.2 bits (204), Expect = 6.0e-15
Identity = 47/116 (40.52%), Postives = 68/116 (58.62%), Query Frame = 0


Query: 33  IVFWDTLRRFHFMMNTKF-MIPVIGGKELDLHVLYSEVTRRGGHEKVVAEKKWREVGSVF 92
           + F D LR+FH    + F  IP +GGKELDLH LY+ VT  GG  KV  + +W E+   F
Sbjct: 17  LAFLDELRQFHHSRGSPFKKIPAVGGKELDLHGLYTRVTTLGGFAKVSEKNQWGEIVEEF 76

Query: 93  KFSPTTTSASFVLRKHYLSLLYHYEQVYLFGR---QGPICVPQAPFPFGS-PTSEN 144
            F  + ++A+F L+++YL  L  YE+V+ FG    + P   P+   P G+ P+S N
Sbjct: 77  NFPRSCSNAAFALKQYYLRYLEKYEKVHHFGEDDDEVPPGNPKPQLPIGAIPSSYN 132

[Close]

BLAST of CsaV3_4G037000 vs. ExPASy TrEMBL
Match: A0A0A0L181 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652850 PE=4 SV=1)

HSP 1 Score: 678.3 bits (1749), Expect = 1.6e-191
Identity = 324/324 (100.00%), Postives = 324/324 (100.00%), Query Frame = 0


Query: 1   MSPPARTKTWNGGLDKHYPPSLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 60
           MSPPARTKTWNGGLDKHYPPSLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL
Sbjct: 1   MSPPARTKTWNGGLDKHYPPSLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 60

Query: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120
           DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL
Sbjct: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120

Query: 121 FGRQGPICVPQAPFPFGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVT 180
           FGRQGPICVPQAPFPFGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVT
Sbjct: 121 FGRQGPICVPQAPFPFGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVT 180

Query: 181 VKLGSEVLRGVLYHPDQPPPSDLRPLSTNAIVPYTGGRYRHSGRRHRRSRRKGDPNHPKP 240
           VKLGSEVLRGVLYHPDQPPPSDLRPLSTNAIVPYTGGRYRHSGRRHRRSRRKGDPNHPKP
Sbjct: 181 VKLGSEVLRGVLYHPDQPPPSDLRPLSTNAIVPYTGGRYRHSGRRHRRSRRKGDPNHPKP 240

Query: 241 NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRE 300
           NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRE
Sbjct: 241 NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRE 300

Query: 301 LKEYKEKMRLGTEVDGANYSKHGD 325
           LKEYKEKMRLGTEVDGANYSKHGD
Sbjct: 301 LKEYKEKMRLGTEVDGANYSKHGD 324

[Close]

BLAST of CsaV3_4G037000 vs. ExPASy TrEMBL
Match: A0A5A7VAK3 (High mobility group B protein 9 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G003410 PE=4 SV=1)

HSP 1 Score: 667.9 bits (1722), Expect = 2.1e-188
Identity = 318/324 (98.15%), Postives = 322/324 (99.38%), Query Frame = 0


Query: 1   MSPPARTKTWNGGLDKHYPPSLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 60
           MSPPARTKTWNGGLDKHYPP LATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL
Sbjct: 1   MSPPARTKTWNGGLDKHYPPPLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 60

Query: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120
           DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL
Sbjct: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120

Query: 121 FGRQGPICVPQAPFPFGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVT 180
           FGRQGPICVPQAPF FGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVT
Sbjct: 121 FGRQGPICVPQAPFSFGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVT 180

Query: 181 VKLGSEVLRGVLYHPDQPPPSDLRPLSTNAIVPYTGGRYRHSGRRHRRSRRKGDPNHPKP 240
           VKLGSEVLRGVLYHP+QPPPSDLRPLSTNAIVPYTGGR+RHSGRRHRRSRRKGDPNHPKP
Sbjct: 181 VKLGSEVLRGVLYHPEQPPPSDLRPLSTNAIVPYTGGRHRHSGRRHRRSRRKGDPNHPKP 240

Query: 241 NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRE 300
           NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRE
Sbjct: 241 NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRE 300

Query: 301 LKEYKEKMRLGTEVDGANYSKHGD 325
           LKEYKEKMR+GT+VDGANYSKHGD
Sbjct: 301 LKEYKEKMRMGTDVDGANYSKHGD 324

[Close]

BLAST of CsaV3_4G037000 vs. ExPASy TrEMBL
Match: E5GCD0 (High mobility group family OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 667.9 bits (1722), Expect = 2.1e-188
Identity = 318/324 (98.15%), Postives = 322/324 (99.38%), Query Frame = 0


Query: 1   MSPPARTKTWNGGLDKHYPPSLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 60
           MSPPARTKTWNGGLDKHYPP LATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL
Sbjct: 1   MSPPARTKTWNGGLDKHYPPPLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 60

Query: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120
           DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL
Sbjct: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120

Query: 121 FGRQGPICVPQAPFPFGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVT 180
           FGRQGPICVPQAPF FGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVT
Sbjct: 121 FGRQGPICVPQAPFSFGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVT 180

Query: 181 VKLGSEVLRGVLYHPDQPPPSDLRPLSTNAIVPYTGGRYRHSGRRHRRSRRKGDPNHPKP 240
           VKLGSEVLRGVLYHP+QPPPSDLRPLSTNAIVPYTGGR+RHSGRRHRRSRRKGDPNHPKP
Sbjct: 181 VKLGSEVLRGVLYHPEQPPPSDLRPLSTNAIVPYTGGRHRHSGRRHRRSRRKGDPNHPKP 240

Query: 241 NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRE 300
           NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRE
Sbjct: 241 NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRE 300

Query: 301 LKEYKEKMRLGTEVDGANYSKHGD 325
           LKEYKEKMR+GT+VDGANYSKHGD
Sbjct: 301 LKEYKEKMRMGTDVDGANYSKHGD 324

[Close]

BLAST of CsaV3_4G037000 vs. ExPASy TrEMBL
Match: A0A1S3BUE9 (high mobility group B protein 9 OS=Cucumis melo OX=3656 GN=LOC103493788 PE=4 SV=1)

HSP 1 Score: 667.9 bits (1722), Expect = 2.1e-188
Identity = 318/324 (98.15%), Postives = 322/324 (99.38%), Query Frame = 0


Query: 1   MSPPARTKTWNGGLDKHYPPSLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 60
           MSPPARTKTWNGGLDKHYPP LATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL
Sbjct: 1   MSPPARTKTWNGGLDKHYPPPLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 60

Query: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120
           DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL
Sbjct: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120

Query: 121 FGRQGPICVPQAPFPFGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVT 180
           FGRQGPICVPQAPF FGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVT
Sbjct: 121 FGRQGPICVPQAPFSFGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVT 180

Query: 181 VKLGSEVLRGVLYHPDQPPPSDLRPLSTNAIVPYTGGRYRHSGRRHRRSRRKGDPNHPKP 240
           VKLGSEVLRGVLYHP+QPPPSDLRPLSTNAIVPYTGGR+RHSGRRHRRSRRKGDPNHPKP
Sbjct: 181 VKLGSEVLRGVLYHPEQPPPSDLRPLSTNAIVPYTGGRHRHSGRRHRRSRRKGDPNHPKP 240

Query: 241 NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRE 300
           NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRE
Sbjct: 241 NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRE 300

Query: 301 LKEYKEKMRLGTEVDGANYSKHGD 325
           LKEYKEKMR+GT+VDGANYSKHGD
Sbjct: 301 LKEYKEKMRMGTDVDGANYSKHGD 324

[Close]

BLAST of CsaV3_4G037000 vs. ExPASy TrEMBL
Match: A0A6J1CH52 (high mobility group B protein 9 OS=Momordica charantia OX=3673 GN=LOC111011470 PE=4 SV=1)

HSP 1 Score: 624.8 bits (1610), Expect = 2.0e-175
Identity = 298/324 (91.98%), Postives = 309/324 (95.37%), Query Frame = 0


Query: 1   MSPPARTKTWNGGLDKHYPPSLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 60
           MSPPAR+K+WN G DKHYP +LATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL
Sbjct: 40  MSPPARSKSWNAGQDKHYPRALATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKEL 99

Query: 61  DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 120
           DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL
Sbjct: 100 DLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYL 159

Query: 121 FGRQGPICVPQAPFPFGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVT 180
           F RQGPICVPQAPF FGSP+SENELALVEYTPKTTSFSPGPP+EVTGTIDGKFDCGYLVT
Sbjct: 160 FSRQGPICVPQAPFSFGSPSSENELALVEYTPKTTSFSPGPPAEVTGTIDGKFDCGYLVT 219

Query: 181 VKLGSEVLRGVLYHPDQPPPSDLRPLSTNAIVPYTGGRYRHSGRRHRRSRRKGDPNHPKP 240
           VKLGSEVLRGVLYHP+QP PS+LRP S NAIVPYTGGR RHSGRRHRRSRRKGDPNHPKP
Sbjct: 220 VKLGSEVLRGVLYHPEQPSPSNLRPQSINAIVPYTGGRLRHSGRRHRRSRRKGDPNHPKP 279

Query: 241 NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRE 300
           NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEER VYQNIGLKDKERY+RE
Sbjct: 280 NRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERTVYQNIGLKDKERYKRE 339

Query: 301 LKEYKEKMRLGTEVDGANYSKHGD 325
           LKEYKEKMR  T++   NYSKHG+
Sbjct: 340 LKEYKEKMRQATDIHEPNYSKHGE 363

[Close]

BLAST of CsaV3_4G037000 vs. TAIR 10
Match: AT1G76110.1 (HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain )

HSP 1 Score: 406.4 bits (1043), Expect = 2.2e-113
Identity = 210/305 (68.85%), Postives = 243/305 (79.67%), Query Frame = 0


Query: 16  KHYPPSLATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGGH 75
           K YP  LA H+ V+ D  VFWDTLRRFH +M+TKFMIPVIGGKELDLHVLY EVTRRGG+
Sbjct: 25  KEYPEPLALHEVVVKDSSVFWDTLRRFHSIMSTKFMIPVIGGKELDLHVLYVEVTRRGGY 84

Query: 76  EKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICVPQAPFP 135
           EKVV EKKWREVG VF+FS TTTSASFVLRKHYL+LL+HYEQV+LF  +GP+  P A F 
Sbjct: 85  EKVVVEKKWREVGGVFRFSATTTSASFVLRKHYLNLLFHYEQVHLFTARGPLLHPIATF- 144

Query: 136 FGSPTSENELALVEYTPKTTSF-SPGPPSE------VTGTIDGKFDCGYLVTVKLGSEVL 195
             +P++  E+ALVEYTP +  + +  PPS+        GTI+GKFDCGYLV VKLGSE+L
Sbjct: 145 HANPSTSKEMALVEYTPPSIRYHNTHPPSQGSSSFTAIGTIEGKFDCGYLVKVKLGSEIL 204

Query: 196 RGVLYHPDQP-PPSDLRPLSTNAIVPY--TGGRYRHSGRRHRRSRRKGDPNHPKPNRSGY 255
            GVLYH  QP P S    +  NA+VPY  TG R R  G+R RRSRR+ DPN+PKPNRSGY
Sbjct: 205 NGVLYHSAQPGPSSSPTAVLNNAVVPYVETGRRRRRLGKR-RRSRRREDPNYPKPNRSGY 264

Query: 256 NFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRELKEYK 311
           NFFFAEKH KLKSLYPN+EREFTK+IGESW+NLS EERMVYQ+IGLKDKERY+REL EY+
Sbjct: 265 NFFFAEKHCKLKSLYPNKEREFTKLIGESWSNLSTEERMVYQDIGLKDKERYQRELNEYR 324

[Close]

BLAST of CsaV3_4G037000 vs. TAIR 10
Match: AT1G04880.1 (HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain )

HSP 1 Score: 264.6 bits (675), Expect = 1.0e-70
Identity = 140/320 (43.75%), Postives = 200/320 (62.50%), Query Frame = 0


Query: 23  ATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVAEK 82
           AT++ V++DP +F  +L R H ++ TKFM+P+IGG++LDLH L+ EVT RGG  K++ E+
Sbjct: 23  ATYEAVVADPRLFMTSLERLHSLLGTKFMVPIIGGRDLDLHKLFVEVTSRGGINKILNER 82

Query: 83  KWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICVPQAPFPFGSP--- 142
           +W+EV + F F PT T+AS+VLRK+Y SLL +YEQ+Y F   G I       P   P   
Sbjct: 83  RWKEVTATFVFPPTATNASYVLRKYYFSLLNNYEQIYFFRSNGQIPPDSMQSPSARPCFI 142

Query: 143 ----TSENELALVEYTPK----TTSFSPG--PPSEVTGTIDGKFDCGYLVTVKLGSEVLR 202
                   EL  + +TP+    T  F  G    S V G IDGKF+ GYLVTV +GSE L+
Sbjct: 143 QGAIRPSQELQALTFTPQPKINTAEFLGGSLAGSNVVGVIDGKFESGYLVTVTIGSEQLK 202

Query: 203 GVLYH-PDQPPPSDLRPLSTNAIVPYT-----------GGRYRHSGRRHRRSRRKGDPNH 262
           GVLY    Q   S   P  ++ ++P T           GG  +   RR +   ++ DP+H
Sbjct: 203 GVLYQLLPQNTVSYQTPQQSHGVLPNTLNISANPQGVAGGVTKRRRRRKKSEIKRRDPDH 262

Query: 263 PKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERY 318
           PKPNRSGYNFFFAE+H +LK L+P ++R+ ++MIGE WN L+ +E+++YQ   ++DKERY
Sbjct: 263 PKPNRSGYNFFFAEQHARLKPLHPGKDRDISRMIGELWNKLNEDEKLIYQGKAMEDKERY 322

[Close]

BLAST of CsaV3_4G037000 vs. TAIR 10
Match: AT3G13350.1 (HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain )

HSP 1 Score: 218.8 bits (556), Expect = 6.5e-57
Identity = 125/291 (42.96%), Postives = 170/291 (58.42%), Query Frame = 0


Query: 23  ATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVAEK 82
           A +D+++ +  +FW+ LR F  + +    +P +GG  LDLH L+ EVT RGG E+VV ++
Sbjct: 34  AKYDDLVRNSALFWEKLRAFLGLTSKTLKVPTVGGNTLDLHRLFIEVTSRGGIERVVKDR 93

Query: 83  KWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICVPQAPFPFGSPTSE 142
           KW+EV   F F  T TSASFVLRK+YL  L+  E VY    + P+   Q+     +  + 
Sbjct: 94  KWKEVIGAFSFPTTITSASFVLRKYYLKFLFQLEHVYYL--EKPVSSLQS-----TDEAL 153

Query: 143 NELALVEYTPKTTSFSPGPPSEVTGTIDGKFDCGYLVTVKLGSEVLRGVLYHPDQPPPSD 202
             LA     P+     P    EV G IDGKFD GYLVT+KLGS+ L+GVLYH  Q P   
Sbjct: 154 KSLANESPNPEEGIDEPQVGYEVQGFIDGKFDSGYLVTMKLGSQELKGVLYHIPQTPSQS 213

Query: 203 LRPLSTNAIVPYTGGRYRHSGRRHRRSRRKG--DPNHPKPNRSGYNFFFAEKHYKLKSLY 262
            + + T + +       + S RRHR+  +    D   PK +RSGYNFFFAE++ +LK  Y
Sbjct: 214 QQTMETPSAI------VQSSQRRHRKKSKLAVVDTQKPKCHRSGYNFFFAEQYARLKPEY 273

Query: 263 PNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRELKEYKEKMRLG 312
             +ER  TK IG  W+NL+  E+ VYQ+ G+KD ERYR E+ EYK     G
Sbjct: 274 HGQERSITKKIGHMWSNLTESEKQVYQDKGVKDVERYRIEMLEYKSSHESG 311

[Close]

BLAST of CsaV3_4G037000 vs. TAIR 10
Match: AT1G55650.1 (HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain )

HSP 1 Score: 176.8 bits (447), Expect = 2.8e-44
Identity = 106/289 (36.68%), Postives = 157/289 (54.33%), Query Frame = 0


Query: 25  HDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVAEKKW 84
           + +++ +P +FW+ LR FH   + KF IP++GGK LDLH L++EVT RGG EKV+ +++ 
Sbjct: 30  YQDIVRNPELFWEMLRDFHESSDKKFKIPIVGGKSLDLHRLFNEVTSRGGLEKVIKDRRC 89

Query: 85  REVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFGRQGPICVPQAPFPFGSPTSENE 144
           +EV   F F  T T+++FVLRK YL +L+ +E +Y F         QAP    S   E E
Sbjct: 90  KEVIDAFNFKTTITNSAFVLRKSYLKMLFEFEHLYYF---------QAPL---STFWEKE 149

Query: 145 LALVEYTPKTT-----SFSPGPPSEVTGTIDGKFDCGYLVTVKLGSEVLRGVLYHPDQPP 204
            AL     K+      S    P + +TG IDGKF+ GYL++ K+GSE L+G+LYH     
Sbjct: 150 KALKLLIEKSANRDKDSQELKPGTVITGIIDGKFESGYLISTKVGSEKLKGMLYH----- 209

Query: 205 PSDLRPLSTNAIVPYTGGRYRHSGRRHRRSRRKGDPNHPKPNRSGYNFFFAEKHYKLKSL 264
                      I P T       G++  +S +      PK  R+GYNFF AE+  ++K+ 
Sbjct: 210 -----------ISPET-----KRGKKKAKSSQGDSHKPPKRQRTGYNFFVAEQSVRIKAE 269

Query: 265 YPNREREFTKMIGESWNNLSPEERMVYQNIGLKDKERYRRELKEYKEKM 309
              ++    K  G  W NLS  +R VY     +D +RY+ E+ +Y+  M
Sbjct: 270 NAGQKVSSPKNFGNMWTNLSESDRKVYYEKSREDGKRYKMEILQYRSLM 285

[Close]

BLAST of CsaV3_4G037000 vs. TAIR 10
Match: AT3G28730.1 (high mobility group )

HSP 1 Score: 48.5 bits (114), Expect = 1.2e-05
Identity = 29/97 (29.90%), Postives = 51/97 (52.58%), Query Frame = 0


Query: 225 RHRRSRRKGDPNHPKPNRSGYNFFFAEKHYKLKSLYPN-REREFTKMIGESWNNLSPEER 284
           + ++ ++K DPN PK   SG+ FF   +   +K  +P     E  K++G+ W  +S +++
Sbjct: 549 KRKKPKKKKDPNAPKRAMSGFMFFSQMERDNIKKEHPGIAFGEVGKVLGDKWRQMSADDK 608

Query: 285 MVYQNIGLKDKERYRRELKEYKEKMRLGTEVDGANYS 321
             Y+     DK+RY+ E+ +YK    +   VD  N S
Sbjct: 609 EPYEAKAQVDKQRYKDEISDYKNPQPM--NVDSGNDS 643

The following BLAST results are available for this feature:

BLAST of CsaV3_4G037000 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145526.1	3.2e-191	100.00	high mobility group B protein 9 [Cucumis sativus] >KGN55473.1 hypothetical prote...	[more]
XP_008452910.1	4.4e-188	98.15	PREDICTED: high mobility group B protein 9 [Cucumis melo] >ADN34129.1 high mobil...	[more]
XP_038899499.1	6.7e-181	94.75	high mobility group B protein 9-like [Benincasa hispida]	[more]
XP_022140929.1	4.2e-175	91.98	high mobility group B protein 9 [Momordica charantia]	[more]
XP_022975460.1	3.4e-172	91.38	high mobility group B protein 9 isoform X2 [Cucurbita maxima]	[more]

BLAST of CsaV3_4G037000 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SGS2	3.1e-112	68.85	High mobility group B protein 9 OS=Arabidopsis thaliana OX=3702 GN=HMGB9 PE=1 SV...	[more]
Q9MAT6	1.5e-69	43.75	High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 ...	[more]
Q9LTT3	9.2e-56	42.96	High mobility group B protein 10 OS=Arabidopsis thaliana OX=3702 GN=HMGB10 PE=1 ...	[more]
Q9LG02	4.0e-43	36.68	Putative high mobility group B protein 11 OS=Arabidopsis thaliana OX=3702 GN=HMG...	[more]
Q68CP9	6.0e-15	40.52	AT-rich interactive domain-containing protein 2 OS=Homo sapiens OX=9606 GN=ARID2...	[more]

BLAST of CsaV3_4G037000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L181	1.6e-191	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652850 PE=4 SV=1	[more]
A0A5A7VAK3	2.1e-188	98.15	High mobility group B protein 9 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
E5GCD0	2.1e-188	98.15	High mobility group family OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A1S3BUE9	2.1e-188	98.15	high mobility group B protein 9 OS=Cucumis melo OX=3656 GN=LOC103493788 PE=4 SV=...	[more]
A0A6J1CH52	2.0e-175	91.98	high mobility group B protein 9 OS=Momordica charantia OX=3673 GN=LOC111011470 P...	[more]

BLAST of CsaV3_4G037000 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G76110.1	2.2e-113	68.85	HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain	[more]
AT1G04880.1	1.0e-70	43.75	HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain	[more]
AT3G13350.1	6.5e-57	42.96	HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain	[more]
AT1G55650.1	2.8e-44	36.68	HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain	[more]
AT3G28730.1	1.2e-05	29.90	high mobility group	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 294..314
None	No IPR available	SMART	SM01014	ARID_2	coord: 26..116 e-value: 2.3E-30 score: 116.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 219..235
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 214..244
None	No IPR available	PANTHER	PTHR46691	HIGH MOBILITY GROUP B PROTEIN 9	coord: 15..312
None	No IPR available	PANTHER	PTHR46691:SF1	HIGH MOBILITY GROUP B PROTEIN 9	coord: 15..312
None	No IPR available	CDD	cd01390	HMGB-UBF_HMG-box	coord: 238..302 e-value: 2.25621E-19 score: 78.8237
None	No IPR available	CDD	cd16872	ARID_HMGB9-like	coord: 31..116 e-value: 1.26597E-45 score: 148.181
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 237..306 e-value: 1.2E-14 score: 64.6
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 238..305 e-value: 1.7E-12 score: 47.5
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 238..305 score: 14.679421
IPR001606	ARID DNA-binding domain	SMART	SM00501	bright_3	coord: 30..121 e-value: 3.4E-31 score: 119.6
IPR001606	ARID DNA-binding domain	PFAM	PF01388	ARID	coord: 35..116 e-value: 2.9E-18 score: 66.3
IPR001606	ARID DNA-binding domain	PROSITE	PS51011	ARID	coord: 29..120 score: 25.015818
IPR036431	ARID DNA-binding domain superfamily	GENE3D	1.10.150.60		coord: 24..126 e-value: 3.3E-26 score: 93.3
IPR036431	ARID DNA-binding domain superfamily	SUPERFAMILY	46774	ARID-like	coord: 26..128
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10	High mobility group box domain	coord: 222..315 e-value: 3.7E-20 score: 74.1
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 235..308

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G037000.1	CsaV3_4G037000.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding