CsaV3_4G036980 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G036980
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	protein TPR1-like isoform X1
Location	chr4: 25973194 .. 25974593 (-)
RNA-Seq Expression	CsaV3_4G036980
Synteny	CsaV3_4G036980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCAAAGTGGCCCCAAATTCCCGTTTATAAATTCAACCTCTTCCGGCCACCATTTTCGTCCACCACCTCTCTCGATCGTTTCATCAGTTCTTCTTCTCGTATGCATGCACGGTGTGGCTCGATATGGCCACCGATCCCGATCCCGATCGTGCCTTGCTCTTCCTCATCCTCCAATTCCTCGACCACCAAAATCTCTCTGAGACTGCTCGCTCGTAAGAGATTTTTACTGTTATTATTTTGTATATATTCACACGTTTAAATGGTATACGTACGACTGATTGTGTAATTATTTCGTTTATTTTGTAGATTGGAATGTGAAACGGGATTGTTCTTCAACATGACTTATTTTGAGGAGCTGTTGAACTGTTGTGCTTATAACGAGGCTGAAAGCTACCTTTGTGGATTCACTGATATTCACGATAATATTTATTCCACAAAGATCTACTTTGGGATTAGAAAGCTCAAATTCCTTGAAGCACTAACAGAGTACGTACGCATCAATTATAAAATATTTAATTTGTGGGATTAATTAAAAGGACAAATAAGTAACTTATGATGAAACCTATATGCAGTGGAGAGCGAGAGGTTGCTCGTGAAGTGGTTGAAAAGGACATAGAAATCTTCGATCAATATAATCCAGGGTTGGTCCAGCAAGCTTTTGAGCTTCTCCAAATGGACAACTTTATGCAAGTTTTCAAATTCCTTATGATTTTCCTCTCCTTAATGTTAAAATTACGGATTTTGGTTCACACCACGTCGTAGTTTCTTGATATCTTTCATGCTCACTCTATTTATTATATGTTAGGATCTACAGATAGTAAACAAATATATACTAGATGGTTACTTCTTCATGTTTGATATTTCACGAAAATCTTAAGAAGAATAATGTAATCGAATTGGAATCAAAGGACCAAATTCGAACATATATTTGATGTCTATTTTTCAAGAACATGATGTAACATGTCATCGGTACTCATCATGAAATGCAGGTCTCACATGTTGCTTTCAAGTTACAGAAACATGAAAGAAGCAAGGAAAGTTGTGATGGAAAATATCAAGAAATGCATTGAAGCTAATCCTCTTCTTGAAGGGAAGCTTTCATTTCCGCCGCTTTCGACGACGCTGCAAGCCTTCTACACGGAGGCTATGGCTTCCCGGAGCAGGCCACCGGCGACTTGCAGGCGAGATTTCAAAGATTGAAAGTATCAATGAGAATCAGCTCAACTTAAAAACTGTTCTTTGTGATATTTCAATTAATTTATGTTTTGTAAGTAATCTTAGCGAAGTGAAAATAAAAAGTGTGTTTAGATGTTTGGTTATGCATTGTTTTCTGGAGTGAAAATTTTGATTGCGAGTAAAAGTACTTTGAAATTTTATCTCATATTTTGTGTGGATTTGAA

mRNA sequence

ATGGCCACCGATCCCGATCCCGATCGTGCCTTGCTCTTCCTCATCCTCCAATTCCTCGACCACCAAAATCTCTCTGAGACTGCTCGCTCATTGGAATGTGAAACGGGATTGTTCTTCAACATGACTTATTTTGAGGAGCTGTTGAACTGTTGTGCTTATAACGAGGCTGAAAGCTACCTTTGTGGATTCACTGATATTCACGATAATATTTATTCCACAAAGATCTACTTTGGGATTAGAAAGCTCAAATTCCTTGAAGCACTAACAGATGGAGAGCGAGAGGTTGCTCGTGAAGTGGTTGAAAAGGACATAGAAATCTTCGATCAATATAATCCAGGGTTGGTCCAGCAAGCTTTTGAGCTTCTCCAAATGGACAACTTTATGTCTCACATGTTGCTTTCAAGTTACAGAAACATGAAAGAAGCAAGGAAAGTTGTGATGGAAAATATCAAGAAATGCATTGAAGCTAATCCTCTTCTTGAAGGGAAGCTTTCATTTCCGCCGCTTTCGACGACGCTGCAAGCCTTCTACACGGAGGCTATGGCTTCCCGGAGCAGGCCACCGGCGACTTGCAGGCGAGATTTCAAAGATTGA

Coding sequence (CDS)

ATGGCCACCGATCCCGATCCCGATCGTGCCTTGCTCTTCCTCATCCTCCAATTCCTCGACCACCAAAATCTCTCTGAGACTGCTCGCTCATTGGAATGTGAAACGGGATTGTTCTTCAACATGACTTATTTTGAGGAGCTGTTGAACTGTTGTGCTTATAACGAGGCTGAAAGCTACCTTTGTGGATTCACTGATATTCACGATAATATTTATTCCACAAAGATCTACTTTGGGATTAGAAAGCTCAAATTCCTTGAAGCACTAACAGATGGAGAGCGAGAGGTTGCTCGTGAAGTGGTTGAAAAGGACATAGAAATCTTCGATCAATATAATCCAGGGTTGGTCCAGCAAGCTTTTGAGCTTCTCCAAATGGACAACTTTATGTCTCACATGTTGCTTTCAAGTTACAGAAACATGAAAGAAGCAAGGAAAGTTGTGATGGAAAATATCAAGAAATGCATTGAAGCTAATCCTCTTCTTGAAGGGAAGCTTTCATTTCCGCCGCTTTCGACGACGCTGCAAGCCTTCTACACGGAGGCTATGGCTTCCCGGAGCAGGCCACCGGCGACTTGCAGGCGAGATTTCAAAGATTGA

Protein sequence

MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYLCGFTDIHDNIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNPGLVQQAFELLQMDNFMSHMLLSSYRNMKEARKVVMENIKKCIEANPLLEGKLSFPPLSTTLQAFYTEAMASRSRPPATCRRDFKD*

Homology

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BLAST of CsaV3_4G036980 vs. NCBI nr
Match: KAE8649955.1 (hypothetical protein Csa_012980 [Cucumis sativus])

HSP 1 Score: 399.1 bits (1024), Expect = 2.3e-107
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL 60
           MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL
Sbjct: 1   MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL 60

Query: 61  CGFTDIHDNIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNPGLVQQAFE 120
           CGFTDIHDNIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNPGLVQQAFE
Sbjct: 61  CGFTDIHDNIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNPGLVQQAFE 120

Query: 121 LLQMDNFMSHMLLSSYRNMKEARKVVMENIKKCIEANPLLEGKLSFPPLSTTLQAFYTEA 180
           LLQMDNFMSHMLLSSYRNMKEARKVVMENIKKCIEANPLLEGKLSFPPLSTTLQAFYTEA
Sbjct: 121 LLQMDNFMSHMLLSSYRNMKEARKVVMENIKKCIEANPLLEGKLSFPPLSTTLQAFYTEA 180

Query: 181 MASRSRPPATCRRDFKD 198
           MASRSRPPATCRRDFKD
Sbjct: 181 MASRSRPPATCRRDFKD 197

[Close]

BLAST of CsaV3_4G036980 vs. NCBI nr
Match: XP_008452905.1 (PREDICTED: protein TPR1-like isoform X1 [Cucumis melo])

HSP 1 Score: 386.3 bits (991), Expect = 1.5e-103
Identity = 190/197 (96.45%), Postives = 193/197 (97.97%), Query Frame = 0


Query: 1   MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL 60
           MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL
Sbjct: 1   MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL 60

Query: 61  CGFTDIHDNIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNPGLVQQAFE 120
           CGFTDIHDNIYSTKIYFGIRKLKFLEAL DGEREVAREVVEKDIEIFDQYNPGLVQQAFE
Sbjct: 61  CGFTDIHDNIYSTKIYFGIRKLKFLEALADGEREVAREVVEKDIEIFDQYNPGLVQQAFE 120

Query: 121 LLQMDNFMSHMLLSSYRNMKEARKVVMENIKKCIEANPLLEGKLSFPPLSTTLQAFYTEA 180
           LLQMDNFMSH+LLSSY+NMKEARKVVMENIKKCIEANPLL+GKLSFPPLSTTLQAFY EA
Sbjct: 121 LLQMDNFMSHILLSSYKNMKEARKVVMENIKKCIEANPLLQGKLSFPPLSTTLQAFYMEA 180

Query: 181 MASRSRPPATCRRDFKD 198
           MASR R PATCRRDFKD
Sbjct: 181 MASRGRAPATCRRDFKD 197

[Close]

BLAST of CsaV3_4G036980 vs. NCBI nr
Match: XP_031740451.1 (protein TPR1 [Cucumis sativus])

HSP 1 Score: 385.6 bits (989), Expect = 2.6e-103
Identity = 197/221 (89.14%), Postives = 197/221 (89.14%), Query Frame = 0


Query: 1   MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL 60
           MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL
Sbjct: 1   MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL 60

Query: 61  CGFTDIHDNIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNPGLVQQAFE 120
           CGFTDIHDNIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNPGLVQQAFE
Sbjct: 61  CGFTDIHDNIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNPGLVQQAFE 120

Query: 121 LLQMDNFM------------------------SHMLLSSYRNMKEARKVVMENIKKCIEA 180
           LLQMDNFM                        SHMLLSSYRNMKEARKVVMENIKKCIEA
Sbjct: 121 LLQMDNFMQVFKFLMIFLSLMLKLRILVHTTSSHMLLSSYRNMKEARKVVMENIKKCIEA 180

Query: 181 NPLLEGKLSFPPLSTTLQAFYTEAMASRSRPPATCRRDFKD 198
           NPLLEGKLSFPPLSTTLQAFYTEAMASRSRPPATCRRDFKD
Sbjct: 181 NPLLEGKLSFPPLSTTLQAFYTEAMASRSRPPATCRRDFKD 221

[Close]

BLAST of CsaV3_4G036980 vs. NCBI nr
Match: KAA0064616.1 (protein TPR1-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 374.8 bits (961), Expect = 4.6e-100
Identity = 190/216 (87.96%), Postives = 193/216 (89.35%), Query Frame = 0


Query: 1   MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL 60
           MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL
Sbjct: 1   MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL 60

Query: 61  CGFTDIHDNIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNPGLVQQAFE 120
           CGFTDIHDNIYSTKIYFGIRKLKFLEAL DGEREVAREVVEKDIEIFDQYNPGLVQQAFE
Sbjct: 61  CGFTDIHDNIYSTKIYFGIRKLKFLEALADGEREVAREVVEKDIEIFDQYNPGLVQQAFE 120

Query: 121 LLQMDNFM-------------------SHMLLSSYRNMKEARKVVMENIKKCIEANPLLE 180
           LLQMDNFM                   SH+LLSSY+NMKEARKVVMENIKKCIEANPLL+
Sbjct: 121 LLQMDNFMQVFKFLIIFSLPNLKLRIWSHILLSSYKNMKEARKVVMENIKKCIEANPLLQ 180

Query: 181 GKLSFPPLSTTLQAFYTEAMASRSRPPATCRRDFKD 198
           GKLSFPPLSTTLQAFY EAMASR R PATCRRDFKD
Sbjct: 181 GKLSFPPLSTTLQAFYMEAMASRGRAPATCRRDFKD 216

[Close]

BLAST of CsaV3_4G036980 vs. NCBI nr
Match: XP_008452906.1 (PREDICTED: protein TPR1-like isoform X2 [Cucumis melo] >ADN34126.1 hypothetical protein [Cucumis melo subsp. melo] >TYK19976.1 protein TPR1-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 349.0 bits (894), Expect = 2.7e-92
Identity = 175/197 (88.83%), Postives = 178/197 (90.36%), Query Frame = 0


Query: 1   MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL 60
           MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL
Sbjct: 1   MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL 60

Query: 61  CGFTDIHDNIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNPGLVQQAFE 120
           CGFTDIHDNIYSTKIYFGIRKLKFLEAL DGEREVAREVVEKDIEIFDQYNPG       
Sbjct: 61  CGFTDIHDNIYSTKIYFGIRKLKFLEALADGEREVAREVVEKDIEIFDQYNPG------- 120

Query: 121 LLQMDNFMSHMLLSSYRNMKEARKVVMENIKKCIEANPLLEGKLSFPPLSTTLQAFYTEA 180
                   SH+LLSSY+NMKEARKVVMENIKKCIEANPLL+GKLSFPPLSTTLQAFY EA
Sbjct: 121 --------SHILLSSYKNMKEARKVVMENIKKCIEANPLLQGKLSFPPLSTTLQAFYMEA 180

Query: 181 MASRSRPPATCRRDFKD 198
           MASR R PATCRRDFKD
Sbjct: 181 MASRGRAPATCRRDFKD 182

[Close]

BLAST of CsaV3_4G036980 vs. ExPASy Swiss-Prot
Match: Q5NBT9 (Protein TPR1 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR1 PE=1 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 4.2e-35
Identity = 76/164 (46.34%), Postives = 106/164 (64.63%), Query Frame = 0


Query: 9   RALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYLCGFTDIHD 68
           R L+FLILQFLD +   ET   LE E+G FFNM YFEE ++   ++E E YL GFT + D
Sbjct: 6   RELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEEKVHAGEWDEVEKYLSGFTKVDD 65

Query: 69  NIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNPGLVQQAFELLQMDNFM 128
           N YS KI+F IRK K+LEAL   +R  A +++ KD+++F  +N  L ++  +LL ++NF 
Sbjct: 66  NRYSMKIFFEIRKQKYLEALDRHDRAKAVDILVKDLKVFSTFNEELYKEITQLLTLENFR 125

Query: 129 SHMLLSSYRNMKEARKVVMENIKKCIEANPLLEGKLSFPPLSTT 173
            +  LS Y + K AR +++  +KK IEANPL   KL FP L  +
Sbjct: 126 ENEQLSKYGDTKSARSIMLIELKKLIEANPLFREKLVFPTLKAS 169

[Close]

BLAST of CsaV3_4G036980 vs. ExPASy Swiss-Prot
Match: Q0WV90 (Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3)

HSP 1 Score: 149.1 bits (375), Expect = 5.4e-35
Identity = 76/164 (46.34%), Postives = 107/164 (65.24%), Query Frame = 0


Query: 9   RALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYLCGFTDIHD 68
           R L+FLILQFLD +   ET   LE E+G FFNM YFE+ ++   ++E E YL GFT + D
Sbjct: 6   RELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDD 65

Query: 69  NIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNPGLVQQAFELLQMDNFM 128
           N YS KI+F IRK K+LEAL   +R  A +++ KD+++F  +N  L ++  +LL ++NF 
Sbjct: 66  NRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLTLENFR 125

Query: 129 SHMLLSSYRNMKEARKVVMENIKKCIEANPLLEGKLSFPPLSTT 173
            +  LS Y + K AR +++  +KK IEANPL   KL FP L T+
Sbjct: 126 ENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTS 169

[Close]

BLAST of CsaV3_4G036980 vs. ExPASy Swiss-Prot
Match: Q0J7U6 (Protein TOPLESS-RELATED PROTEIN 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR2 PE=1 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 9.3e-35
Identity = 74/164 (45.12%), Postives = 106/164 (64.63%), Query Frame = 0


Query: 9   RALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYLCGFTDIHD 68
           R L+FLILQFLD +   ET   LE E+  +FNM +FE+L+    ++E E YL GFT + D
Sbjct: 6   RELVFLILQFLDEEKFKETVHKLEQESAFYFNMKHFEDLVQGGEWDEVEKYLSGFTKVED 65

Query: 69  NIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNPGLVQQAFELLQMDNFM 128
           N YS KI+F IRK K+LEAL   +R  A E++ KD+++F  +N  L ++  +LL ++NF 
Sbjct: 66  NRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFASFNEELFKEITQLLTLENFR 125

Query: 129 SHMLLSSYRNMKEARKVVMENIKKCIEANPLLEGKLSFPPLSTT 173
            +  LS Y + K AR +++  +KK IEANPL   KL+FPP   +
Sbjct: 126 QNEQLSKYGDTKSARNIMLMELKKLIEANPLFRDKLNFPPFKVS 169

[Close]

BLAST of CsaV3_4G036980 vs. ExPASy Swiss-Prot
Match: Q94AI7 (Protein TOPLESS OS=Arabidopsis thaliana OX=3702 GN=TPL PE=1 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.6e-34
Identity = 75/161 (46.58%), Postives = 105/161 (65.22%), Query Frame = 0


Query: 9   RALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYLCGFTDIHD 68
           R L+FLILQFLD +   ET   LE E+G FFNM YFE+ ++   ++E E YL GFT + D
Sbjct: 6   RELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDD 65

Query: 69  NIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNPGLVQQAFELLQMDNFM 128
           N YS KI+F IRK K+LEAL   +R  A +++ KD+++F  +N  L ++  +LL ++NF 
Sbjct: 66  NRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLTLENFR 125

Query: 129 SHMLLSSYRNMKEARKVVMENIKKCIEANPLLEGKLSFPPL 170
            +  LS Y + K AR +++  +KK IEANPL   KL FP L
Sbjct: 126 ENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTL 166

[Close]

BLAST of CsaV3_4G036980 vs. ExPASy Swiss-Prot
Match: Q9LRZ0 (Topless-related protein 2 OS=Arabidopsis thaliana OX=3702 GN=TPR2 PE=1 SV=2)

HSP 1 Score: 145.2 bits (365), Expect = 7.8e-34
Identity = 74/159 (46.54%), Postives = 102/159 (64.15%), Query Frame = 0


Query: 9   RALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYLCGFTDIHD 68
           R L+FLILQFLD +   E+   LE E+G FFN+ YFEE      ++E E YL GFT + D
Sbjct: 6   RELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGFTKVDD 65

Query: 69  NIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNPGLVQQAFELLQMDNFM 128
           N YS KI+F IRK K+LEAL   +R  A E++ KD+++F  +N  L ++  +LL ++NF 
Sbjct: 66  NRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLTLENFR 125

Query: 129 SHMLLSSYRNMKEARKVVMENIKKCIEANPLLEGKLSFP 168
            +  LS Y + K AR ++   +KK IEANPL   KL+FP
Sbjct: 126 ENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFP 164

[Close]

BLAST of CsaV3_4G036980 vs. ExPASy TrEMBL
Match: A0A1S3BUX9 (protein TPR1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493786 PE=4 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 7.5e-104
Identity = 190/197 (96.45%), Postives = 193/197 (97.97%), Query Frame = 0


Query: 1   MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL 60
           MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL
Sbjct: 1   MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL 60

Query: 61  CGFTDIHDNIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNPGLVQQAFE 120
           CGFTDIHDNIYSTKIYFGIRKLKFLEAL DGEREVAREVVEKDIEIFDQYNPGLVQQAFE
Sbjct: 61  CGFTDIHDNIYSTKIYFGIRKLKFLEALADGEREVAREVVEKDIEIFDQYNPGLVQQAFE 120

Query: 121 LLQMDNFMSHMLLSSYRNMKEARKVVMENIKKCIEANPLLEGKLSFPPLSTTLQAFYTEA 180
           LLQMDNFMSH+LLSSY+NMKEARKVVMENIKKCIEANPLL+GKLSFPPLSTTLQAFY EA
Sbjct: 121 LLQMDNFMSHILLSSYKNMKEARKVVMENIKKCIEANPLLQGKLSFPPLSTTLQAFYMEA 180

Query: 181 MASRSRPPATCRRDFKD 198
           MASR R PATCRRDFKD
Sbjct: 181 MASRGRAPATCRRDFKD 197

[Close]

BLAST of CsaV3_4G036980 vs. ExPASy TrEMBL
Match: A0A5A7VE79 (Protein TPR1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G003390 PE=4 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 2.2e-100
Identity = 190/216 (87.96%), Postives = 193/216 (89.35%), Query Frame = 0


Query: 1   MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL 60
           MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL
Sbjct: 1   MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL 60

Query: 61  CGFTDIHDNIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNPGLVQQAFE 120
           CGFTDIHDNIYSTKIYFGIRKLKFLEAL DGEREVAREVVEKDIEIFDQYNPGLVQQAFE
Sbjct: 61  CGFTDIHDNIYSTKIYFGIRKLKFLEALADGEREVAREVVEKDIEIFDQYNPGLVQQAFE 120

Query: 121 LLQMDNFM-------------------SHMLLSSYRNMKEARKVVMENIKKCIEANPLLE 180
           LLQMDNFM                   SH+LLSSY+NMKEARKVVMENIKKCIEANPLL+
Sbjct: 121 LLQMDNFMQVFKFLIIFSLPNLKLRIWSHILLSSYKNMKEARKVVMENIKKCIEANPLLQ 180

Query: 181 GKLSFPPLSTTLQAFYTEAMASRSRPPATCRRDFKD 198
           GKLSFPPLSTTLQAFY EAMASR R PATCRRDFKD
Sbjct: 181 GKLSFPPLSTTLQAFYMEAMASRGRAPATCRRDFKD 216

[Close]

BLAST of CsaV3_4G036980 vs. ExPASy TrEMBL
Match: A0A0A0L5R0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652830 PE=4 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 2.0e-96
Identity = 182/197 (92.39%), Postives = 182/197 (92.39%), Query Frame = 0


Query: 1   MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL 60
           MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL
Sbjct: 1   MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL 60

Query: 61  CGFTDIHDNIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNPGLVQQAFE 120
           CGFTDIHDNIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNPG       
Sbjct: 61  CGFTDIHDNIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNPG------- 120

Query: 121 LLQMDNFMSHMLLSSYRNMKEARKVVMENIKKCIEANPLLEGKLSFPPLSTTLQAFYTEA 180
                   SHMLLSSYRNMKEARKVVMENIKKCIEANPLLEGKLSFPPLSTTLQAFYTEA
Sbjct: 121 --------SHMLLSSYRNMKEARKVVMENIKKCIEANPLLEGKLSFPPLSTTLQAFYTEA 180

Query: 181 MASRSRPPATCRRDFKD 198
           MASRSRPPATCRRDFKD
Sbjct: 181 MASRSRPPATCRRDFKD 182

[Close]

BLAST of CsaV3_4G036980 vs. ExPASy TrEMBL
Match: A0A5D3D8T8 (Protein TPR1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00900 PE=4 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 1.3e-92
Identity = 175/197 (88.83%), Postives = 178/197 (90.36%), Query Frame = 0


Query: 1   MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL 60
           MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL
Sbjct: 1   MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL 60

Query: 61  CGFTDIHDNIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNPGLVQQAFE 120
           CGFTDIHDNIYSTKIYFGIRKLKFLEAL DGEREVAREVVEKDIEIFDQYNPG       
Sbjct: 61  CGFTDIHDNIYSTKIYFGIRKLKFLEALADGEREVAREVVEKDIEIFDQYNPG------- 120

Query: 121 LLQMDNFMSHMLLSSYRNMKEARKVVMENIKKCIEANPLLEGKLSFPPLSTTLQAFYTEA 180
                   SH+LLSSY+NMKEARKVVMENIKKCIEANPLL+GKLSFPPLSTTLQAFY EA
Sbjct: 121 --------SHILLSSYKNMKEARKVVMENIKKCIEANPLLQGKLSFPPLSTTLQAFYMEA 180

Query: 181 MASRSRPPATCRRDFKD 198
           MASR R PATCRRDFKD
Sbjct: 181 MASRGRAPATCRRDFKD 182

[Close]

BLAST of CsaV3_4G036980 vs. ExPASy TrEMBL
Match: E5GCC7 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 1.3e-92
Identity = 175/197 (88.83%), Postives = 178/197 (90.36%), Query Frame = 0


Query: 1   MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL 60
           MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL
Sbjct: 1   MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL 60

Query: 61  CGFTDIHDNIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNPGLVQQAFE 120
           CGFTDIHDNIYSTKIYFGIRKLKFLEAL DGEREVAREVVEKDIEIFDQYNPG       
Sbjct: 61  CGFTDIHDNIYSTKIYFGIRKLKFLEALADGEREVAREVVEKDIEIFDQYNPG------- 120

Query: 121 LLQMDNFMSHMLLSSYRNMKEARKVVMENIKKCIEANPLLEGKLSFPPLSTTLQAFYTEA 180
                   SH+LLSSY+NMKEARKVVMENIKKCIEANPLL+GKLSFPPLSTTLQAFY EA
Sbjct: 121 --------SHILLSSYKNMKEARKVVMENIKKCIEANPLLQGKLSFPPLSTTLQAFYMEA 180

Query: 181 MASRSRPPATCRRDFKD 198
           MASR R PATCRRDFKD
Sbjct: 181 MASRGRAPATCRRDFKD 182

[Close]

BLAST of CsaV3_4G036980 vs. TAIR 10
Match: AT1G80490.1 (TOPLESS-related 1 )

HSP 1 Score: 149.1 bits (375), Expect = 3.9e-36
Identity = 76/164 (46.34%), Postives = 107/164 (65.24%), Query Frame = 0


Query: 9   RALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYLCGFTDIHD 68
           R L+FLILQFLD +   ET   LE E+G FFNM YFE+ ++   ++E E YL GFT + D
Sbjct: 6   RELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDD 65

Query: 69  NIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNPGLVQQAFELLQMDNFM 128
           N YS KI+F IRK K+LEAL   +R  A +++ KD+++F  +N  L ++  +LL ++NF 
Sbjct: 66  NRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLTLENFR 125

Query: 129 SHMLLSSYRNMKEARKVVMENIKKCIEANPLLEGKLSFPPLSTT 173
            +  LS Y + K AR +++  +KK IEANPL   KL FP L T+
Sbjct: 126 ENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTS 169

[Close]

BLAST of CsaV3_4G036980 vs. TAIR 10
Match: AT1G80490.2 (TOPLESS-related 1 )

HSP 1 Score: 149.1 bits (375), Expect = 3.9e-36
Identity = 76/164 (46.34%), Postives = 107/164 (65.24%), Query Frame = 0


Query: 9   RALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYLCGFTDIHD 68
           R L+FLILQFLD +   ET   LE E+G FFNM YFE+ ++   ++E E YL GFT + D
Sbjct: 6   RELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDD 65

Query: 69  NIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNPGLVQQAFELLQMDNFM 128
           N YS KI+F IRK K+LEAL   +R  A +++ KD+++F  +N  L ++  +LL ++NF 
Sbjct: 66  NRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLTLENFR 125

Query: 129 SHMLLSSYRNMKEARKVVMENIKKCIEANPLLEGKLSFPPLSTT 173
            +  LS Y + K AR +++  +KK IEANPL   KL FP L T+
Sbjct: 126 ENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTS 169

[Close]

BLAST of CsaV3_4G036980 vs. TAIR 10
Match: AT1G15750.1 (Transducin family protein / WD-40 repeat family protein )

HSP 1 Score: 147.5 bits (371), Expect = 1.1e-35
Identity = 75/161 (46.58%), Postives = 105/161 (65.22%), Query Frame = 0


Query: 9   RALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYLCGFTDIHD 68
           R L+FLILQFLD +   ET   LE E+G FFNM YFE+ ++   ++E E YL GFT + D
Sbjct: 6   RELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDD 65

Query: 69  NIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNPGLVQQAFELLQMDNFM 128
           N YS KI+F IRK K+LEAL   +R  A +++ KD+++F  +N  L ++  +LL ++NF 
Sbjct: 66  NRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLTLENFR 125

Query: 129 SHMLLSSYRNMKEARKVVMENIKKCIEANPLLEGKLSFPPL 170
            +  LS Y + K AR +++  +KK IEANPL   KL FP L
Sbjct: 126 ENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTL 166

[Close]

BLAST of CsaV3_4G036980 vs. TAIR 10
Match: AT1G15750.2 (Transducin family protein / WD-40 repeat family protein )

HSP 1 Score: 147.5 bits (371), Expect = 1.1e-35
Identity = 75/161 (46.58%), Postives = 105/161 (65.22%), Query Frame = 0


Query: 9   RALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYLCGFTDIHD 68
           R L+FLILQFLD +   ET   LE E+G FFNM YFE+ ++   ++E E YL GFT + D
Sbjct: 6   RELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDD 65

Query: 69  NIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNPGLVQQAFELLQMDNFM 128
           N YS KI+F IRK K+LEAL   +R  A +++ KD+++F  +N  L ++  +LL ++NF 
Sbjct: 66  NRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLTLENFR 125

Query: 129 SHMLLSSYRNMKEARKVVMENIKKCIEANPLLEGKLSFPPL 170
            +  LS Y + K AR +++  +KK IEANPL   KL FP L
Sbjct: 126 ENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTL 166

[Close]

BLAST of CsaV3_4G036980 vs. TAIR 10
Match: AT1G15750.3 (Transducin family protein / WD-40 repeat family protein )

HSP 1 Score: 147.5 bits (371), Expect = 1.1e-35
Identity = 75/161 (46.58%), Postives = 105/161 (65.22%), Query Frame = 0


Query: 9   RALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYLCGFTDIHD 68
           R L+FLILQFLD +   ET   LE E+G FFNM YFE+ ++   ++E E YL GFT + D
Sbjct: 6   RELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDD 65

Query: 69  NIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNPGLVQQAFELLQMDNFM 128
           N YS KI+F IRK K+LEAL   +R  A +++ KD+++F  +N  L ++  +LL ++NF 
Sbjct: 66  NRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLTLENFR 125

Query: 129 SHMLLSSYRNMKEARKVVMENIKKCIEANPLLEGKLSFPPL 170
            +  LS Y + K AR +++  +KK IEANPL   KL FP L
Sbjct: 126 ENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTL 166

The following BLAST results are available for this feature:

BLAST of CsaV3_4G036980 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649955.1	2.3e-107	100.00	hypothetical protein Csa_012980 [Cucumis sativus]	[more]
XP_008452905.1	1.5e-103	96.45	PREDICTED: protein TPR1-like isoform X1 [Cucumis melo]	[more]
XP_031740451.1	2.6e-103	89.14	protein TPR1 [Cucumis sativus]	[more]
KAA0064616.1	4.6e-100	87.96	protein TPR1-like isoform X1 [Cucumis melo var. makuwa]	[more]
XP_008452906.1	2.7e-92	88.83	PREDICTED: protein TPR1-like isoform X2 [Cucumis melo] >ADN34126.1 hypothetical ...	[more]

BLAST of CsaV3_4G036980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5NBT9	4.2e-35	46.34	Protein TPR1 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR1 PE=1 SV=1	[more]
Q0WV90	5.4e-35	46.34	Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3	[more]
Q0J7U6	9.3e-35	45.12	Protein TOPLESS-RELATED PROTEIN 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TP...	[more]
Q94AI7	1.6e-34	46.58	Protein TOPLESS OS=Arabidopsis thaliana OX=3702 GN=TPL PE=1 SV=1	[more]
Q9LRZ0	7.8e-34	46.54	Topless-related protein 2 OS=Arabidopsis thaliana OX=3702 GN=TPR2 PE=1 SV=2	[more]

BLAST of CsaV3_4G036980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BUX9	7.5e-104	96.45	protein TPR1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493786 PE=4 SV=1	[more]
A0A5A7VE79	2.2e-100	87.96	Protein TPR1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A0A0L5R0	2.0e-96	92.39	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652830 PE=4 SV=1	[more]
A0A5D3D8T8	1.3e-92	88.83	Protein TPR1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
E5GCC7	1.3e-92	88.83	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

BLAST of CsaV3_4G036980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G80490.1	3.9e-36	46.34	TOPLESS-related 1	[more]
AT1G80490.2	3.9e-36	46.34	TOPLESS-related 1	[more]
AT1G15750.1	1.1e-35	46.58	Transducin family protein / WD-40 repeat family protein	[more]
AT1G15750.2	1.1e-35	46.58	Transducin family protein / WD-40 repeat family protein	[more]
AT1G15750.3	1.1e-35	46.58	Transducin family protein / WD-40 repeat family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006594	LIS1 homology motif	SMART	SM00667	Lish	coord: 7..39 e-value: 0.0016 score: 27.7
IPR006594	LIS1 homology motif	PROSITE	PS50896	LISH	coord: 7..39 score: 9.413857
IPR027728	Topless family	PANTHER	PTHR44083	TOPLESS-RELATED PROTEIN 1-RELATED	coord: 6..170
None	No IPR available	PANTHER	PTHR44083:SF26	1 ENHANCER LOCUS 2 PROTEIN, PUTATIVE-RELATED	coord: 6..170
IPR006595	CTLH, C-terminal LisH motif	PROSITE	PS50897	CTLH	coord: 38..95 score: 8.754301

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G036980.1	CsaV3_4G036980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0005515	protein binding