CsaV3_4G035810 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G035810
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	leucine-rich repeat extensin-like protein 2
Location	chr4: 25181916 .. 25183751 (-)
RNA-Seq Expression	CsaV3_4G035810
Synteny	CsaV3_4G035810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGTTTCCAGGAACAAGGCGAATTCTCGGCTCTTTCGGGCTATGGATTGTCGCATTCACTTTGTTTTCAGCATCATCCAAAGCCCAGATGGCTGTCCCCTCCACCGGACAGCTCTGCATAAGTGATTGCTCCACCTGTCCCGTGATTTGCACGGCGCCGCCTCCTCCACTCTCTTACATTCCGCCTCCGCCGCCCAACTTTTACGGTGGGTTCAATATGGCACCACCGGCTACTCCGTCGTACTATTTATGGGGTCCGCCGCCTCCGGTTGCGAATTATTTTTTGGGCGCTCGGCCTTCCGGTGAGATGCCTCAAACGGTGGGGCCTCGGGATTATTCTTACCCTTATTATTATTTCTACAGTTCAAATTCGGGTTCGTTCACTTATATTTCGAAGTTCATTGTGCTGTTTGTTTGTTTGCTTCATTTTGTTTTGTAATGATGTTGACAAGAACCTGACGGATTGTTGTTGTTGAATGGTTTGTTCTTAAGCGGTTCATCAAATCCGTGATAAGATAACAGTGTCGAGTGTAGGTAACAGTGGAGTGTAGTTGTTGATGGGTTTGTTGAATTGTCTACTCGTATTGTAATGATAAGAAAAGATAAACTCTACTATCAAGTATGGATAGATCATTTGAGGAATATGCATGAGAGAAAGTTGTATAAATATTTCAAATTTTGTATTAGTGGTTCATTGAGTAATTGAAATCAACCAAGTTTTGAAATATCTGGTTGAAAAAGTTTTCATACTTAACTTAAGTTTGAGTTTTAACAAATAAACAACCCAAACTTAGCTCAACTAACATTTATATTGAAAATATATAGATTTAATATCTTTTTCATGTGTATTAAATAAAAAAAAAGTATCCTTTTAAATGAACATACAAAAAAATATAATCTTTTACATCTAAATATGGTAAGGTCGAAAAAAAAAAGTAAATTAAGCTCATATCAATATTCATATAAGTTATTATTAACCATTATTAAATTAAAAACTAGAAGGATTGTGAAATTAATTATGAAAATTACAAAGACAGAAAATTGAAACTCTGGTCTCGATAAAGAGTATTATGTTCATAAACGCTTTTACTTAAATCAAGCTATATAGCTAATATGATATTTCACATGGTAAATTGCAATTGATCGGTTTTCTTAAAAAATAGAAGTATATAAATAATAACAGCTAAGTTGTACCAATTATTATATGTACCATCAAGTATACTATACTCCAAGTTTAATCAAATCAAACCTAAAAAAGTTTATATTATTGTTATCACTTAAAAATTTTGTCATTTGTACCGTAGGATAAATTGTGTTGTATCTCCCAATATAACTATAAACAAAAACAATATAACTATAAACAAAAAGAAAAAAGAAACTATACCTGTTTTTAATAATAAATTGTAAATTTGTGTGAAAATTCGAAGGATGATTTATGAACCTTAAGCAAATTTAACATATTATCGGACTTTATATTAACAAATTAGTCTAAACAAACGTACAACAAAAAAAAAAAAAAGTTTAAAAATAGTGACAAATATAACTATTACATTTGAAAAGATTAAATATTTAATAGCATTGTAAAAAAATTCCAAATATATACAAATATAAGTATTAATTTTAGATAAAAATCTGCATTTACTTTTGTAAATGTAGCACAAGAATGATTTGTATAGACCAGAATACCCCTATAATTACAAAGAAAATTTGGGAAAAGTATGCCTTTCTCTCTCTCTCAGTCGTGCAAAAAACTGAAGTCATTTCAGATCCAAATGGTAAAACGATAACCGGTTTCGTTAACGAGCAGGGACGGAGCTCATCGGCTCACCGGTAG

mRNA sequence

ATGCCGTTTCCAGGAACAAGGCGAATTCTCGGCTCTTTCGGGCTATGGATTGTCGCATTCACTTTGTTTTCAGCATCATCCAAAGCCCAGATGGCTGTCCCCTCCACCGGACAGCTCTGCATAAGTGATTGCTCCACCTGTCCCGTGATTTGCACGGCGCCGCCTCCTCCACTCTCTTACATTCCGCCTCCGCCGCCCAACTTTTACGGTGGGTTCAATATGGCACCACCGGCTACTCCGTCGTACTATTTATGGGGTCCGCCGCCTCCGGTTGCGAATTATTTTTTGGGCGCTCGGCCTTCCGGTGAGATGCCTCAAACGGTGGGGCCTCGGGATTATTCTTACCCTTATTATTATTTCTACAGTTCAAATTCGGTCGTGCAAAAAACTGAAGTCATTTCAGATCCAAATGGTAAAACGATAACCGGTTTCGTTAACGAGCAGGGACGGAGCTCATCGGCTCACCGGTAG

Coding sequence (CDS)

ATGCCGTTTCCAGGAACAAGGCGAATTCTCGGCTCTTTCGGGCTATGGATTGTCGCATTCACTTTGTTTTCAGCATCATCCAAAGCCCAGATGGCTGTCCCCTCCACCGGACAGCTCTGCATAAGTGATTGCTCCACCTGTCCCGTGATTTGCACGGCGCCGCCTCCTCCACTCTCTTACATTCCGCCTCCGCCGCCCAACTTTTACGGTGGGTTCAATATGGCACCACCGGCTACTCCGTCGTACTATTTATGGGGTCCGCCGCCTCCGGTTGCGAATTATTTTTTGGGCGCTCGGCCTTCCGGTGAGATGCCTCAAACGGTGGGGCCTCGGGATTATTCTTACCCTTATTATTATTTCTACAGTTCAAATTCGGTCGTGCAAAAAACTGAAGTCATTTCAGATCCAAATGGTAAAACGATAACCGGTTTCGTTAACGAGCAGGGACGGAGCTCATCGGCTCACCGGTAG

Protein sequence

MPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPLSYIPPPPPNFYGGFNMAPPATPSYYLWGPPPPVANYFLGARPSGEMPQTVGPRDYSYPYYYFYSSNSVVQKTEVISDPNGKTITGFVNEQGRSSSAHR*

Homology

[Close]

BLAST of CsaV3_4G035810 vs. NCBI nr
Match: KAE8649911.1 (hypothetical protein Csa_012510 [Cucumis sativus])

HSP 1 Score: 327.8 bits (839), Expect = 5.2e-86
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 1   MPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPLSY 60
           MPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPLSY
Sbjct: 1   MPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPLSY 60

Query: 61  IPPPPPNFYGGFNMAPPATPSYYLWGPPPPVANYFLGARPSGEMPQTVGPRDYSYPYYYF 120
           IPPPPPNFYGGFNMAPPATPSYYLWGPPPPVANYFLGARPSGEMPQTVGPRDYSYPYYYF
Sbjct: 61  IPPPPPNFYGGFNMAPPATPSYYLWGPPPPVANYFLGARPSGEMPQTVGPRDYSYPYYYF 120

Query: 121 YSSNSVVQKTEVISDPNGKTITGFVNEQGRSSSAHR 157
           YSSNSVVQKTEVISDPNGKTITGFVNEQGRSSSAHR
Sbjct: 121 YSSNSVVQKTEVISDPNGKTITGFVNEQGRSSSAHR 156

[Close]

BLAST of CsaV3_4G035810 vs. NCBI nr
Match: KAG6608366.1 (Conserved oligomeric Golgi complex subunit 8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 171.8 bits (434), Expect = 4.7e-39
Identity = 86/127 (67.72%), Postives = 95/127 (74.80%), Query Frame = 0


Query: 1   MPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPL-- 60
           MPF G      S GLW++A  LF   S AQ+ VPSTGQLCIS C TCPV+CT P P    
Sbjct: 1   MPFQGKMPFSTSLGLWVMAAALFLPPSDAQLPVPSTGQLCISQCVTCPVVCTTPTPRSYN 60

Query: 61  SYIPPPPPNFYGGFNMAPPA-TPSYYLWGPPPPVANYFLGARPSGEMPQTVGPRDYSYPY 120
           +YIPPPPP FYGG+   PPA T SY+L GPPPPVANY  GA+PSG+MPQTVGPRDYSYPY
Sbjct: 61  TYIPPPPPAFYGGYMGPPPALTSSYFLRGPPPPVANYVSGAQPSGQMPQTVGPRDYSYPY 120

Query: 121 YYFYSSN 125
           YYFYSSN
Sbjct: 121 YYFYSSN 127

[Close]

BLAST of CsaV3_4G035810 vs. NCBI nr
Match: XP_022940707.1 (leucine-rich repeat extensin-like protein 2 [Cucurbita moschata])

HSP 1 Score: 171.4 bits (433), Expect = 6.2e-39
Identity = 86/127 (67.72%), Postives = 95/127 (74.80%), Query Frame = 0


Query: 1   MPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPL-- 60
           MPF G  R   S GLW++A  LF   S AQ+ VPSTGQLCIS C TCPV+CT P P    
Sbjct: 1   MPFQGKMRFSTSLGLWVMAAALFLPPSDAQLPVPSTGQLCISQCVTCPVVCTTPTPRSYN 60

Query: 61  SYIPPPPPNFYGGFNMAPPA-TPSYYLWGPPPPVANYFLGARPSGEMPQTVGPRDYSYPY 120
           +YIPPPPP FYGG+   PPA T SY+L GP PPVANY  GA+PSG+MPQTVGPRDYSYPY
Sbjct: 61  TYIPPPPPAFYGGYMGPPPALTSSYFLRGPSPPVANYVSGAQPSGQMPQTVGPRDYSYPY 120

Query: 121 YYFYSSN 125
           YYFYSSN
Sbjct: 121 YYFYSSN 127

[Close]

BLAST of CsaV3_4G035810 vs. NCBI nr
Match: XP_022981722.1 (leucine-rich repeat extensin-like protein 1 [Cucurbita maxima])

HSP 1 Score: 160.2 bits (404), Expect = 1.4e-35
Identity = 85/134 (63.43%), Postives = 93/134 (69.40%), Query Frame = 0


Query: 1   MPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAP---PPP 60
           MPF G  R   S GL ++A  LF   S AQ+ VPST QLCIS C TCPV+CT P   P P
Sbjct: 1   MPFQGKMRFSTSLGLCVMAAALFLPPSDAQLPVPSTEQLCISQCVTCPVVCTTPTPTPTP 60

Query: 61  LSYI------PPPPPNFYGGFNMAPPA-TPSYYLWGPPPPVANYFLGARPSGEMPQTVGP 120
            SY       PPPPP FYGG+   PPA T SY+  GPPPPVANY  GA+PSG+MPQTVGP
Sbjct: 61  RSYSSYIPSPPPPPPAFYGGYMGPPPALTSSYFFRGPPPPVANYVSGAQPSGQMPQTVGP 120

Query: 121 RDYSYPYYYFYSSN 125
           RDYSYPYYYFYSSN
Sbjct: 121 RDYSYPYYYFYSSN 134

[Close]

BLAST of CsaV3_4G035810 vs. NCBI nr
Match: XP_023523402.1 (leucine-rich repeat extensin-like protein 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 149.8 bits (377), Expect = 1.9e-32
Identity = 78/112 (69.64%), Postives = 86/112 (76.79%), Query Frame = 0


Query: 18  VAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPL--SYI--PPPPPNFYGGFN 77
           +A  LF   S AQ+ VPSTGQLCIS C TCPV+CT P P    +YI  PPPPP FYGG+ 
Sbjct: 1   MAAALFLPPSDAQLPVPSTGQLCISQCVTCPVVCTTPTPRSYNTYIPPPPPPPAFYGGYM 60

Query: 78  MAPPA-TPSYYLWGPPPPVANYFLGARPSGEMPQTVGPRDYSYPYYYFYSSN 125
             PPA T SY+L GPPPPVANY  GA+PSG+MPQTVGPRDYSYPYYYFYSSN
Sbjct: 61  GPPPALTSSYFLRGPPPPVANYVSGAQPSGQMPQTVGPRDYSYPYYYFYSSN 112

[Close]

BLAST of CsaV3_4G035810 vs. ExPASy TrEMBL
Match: A0A0A0L054 (Microtubule associated protein (Ase1) OS=Cucumis sativus OX=3659 GN=Csa_4G646240 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 4.0e-68
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 1   MPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPLSY 60
           MPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPLSY
Sbjct: 39  MPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPLSY 98

Query: 61  IPPPPPNFYGGFNMAPPATPSYYLWGPPPPVANYFLGARPSGEMPQTVGPRDYSYPYYYF 120
           IPPPPPNFYGGFNMAPPATPSYYLWGPPPPVANYFLGARPSGEMPQTVGPRDYSYPYYYF
Sbjct: 99  IPPPPPNFYGGFNMAPPATPSYYLWGPPPPVANYFLGARPSGEMPQTVGPRDYSYPYYYF 158

Query: 121 YSSNS 126
           YSSNS
Sbjct: 159 YSSNS 163

[Close]

BLAST of CsaV3_4G035810 vs. ExPASy TrEMBL
Match: A0A6J1FKD3 (leucine-rich repeat extensin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111446222 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.0e-39
Identity = 86/127 (67.72%), Postives = 95/127 (74.80%), Query Frame = 0


Query: 1   MPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPPPL-- 60
           MPF G  R   S GLW++A  LF   S AQ+ VPSTGQLCIS C TCPV+CT P P    
Sbjct: 1   MPFQGKMRFSTSLGLWVMAAALFLPPSDAQLPVPSTGQLCISQCVTCPVVCTTPTPRSYN 60

Query: 61  SYIPPPPPNFYGGFNMAPPA-TPSYYLWGPPPPVANYFLGARPSGEMPQTVGPRDYSYPY 120
           +YIPPPPP FYGG+   PPA T SY+L GP PPVANY  GA+PSG+MPQTVGPRDYSYPY
Sbjct: 61  TYIPPPPPAFYGGYMGPPPALTSSYFLRGPSPPVANYVSGAQPSGQMPQTVGPRDYSYPY 120

Query: 121 YYFYSSN 125
           YYFYSSN
Sbjct: 121 YYFYSSN 127

[Close]

BLAST of CsaV3_4G035810 vs. ExPASy TrEMBL
Match: A0A6J1IUS7 (leucine-rich repeat extensin-like protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111480787 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 6.9e-36
Identity = 85/134 (63.43%), Postives = 93/134 (69.40%), Query Frame = 0


Query: 1   MPFPGTRRILGSFGLWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAP---PPP 60
           MPF G  R   S GL ++A  LF   S AQ+ VPST QLCIS C TCPV+CT P   P P
Sbjct: 1   MPFQGKMRFSTSLGLCVMAAALFLPPSDAQLPVPSTEQLCISQCVTCPVVCTTPTPTPTP 60

Query: 61  LSYI------PPPPPNFYGGFNMAPPA-TPSYYLWGPPPPVANYFLGARPSGEMPQTVGP 120
            SY       PPPPP FYGG+   PPA T SY+  GPPPPVANY  GA+PSG+MPQTVGP
Sbjct: 61  RSYSSYIPSPPPPPPAFYGGYMGPPPALTSSYFFRGPPPPVANYVSGAQPSGQMPQTVGP 120

Query: 121 RDYSYPYYYFYSSN 125
           RDYSYPYYYFYSSN
Sbjct: 121 RDYSYPYYYFYSSN 134

[Close]

BLAST of CsaV3_4G035810 vs. ExPASy TrEMBL
Match: A0A2N9HA71 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39158 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.9e-17
Identity = 60/138 (43.48%), Postives = 72/138 (52.17%), Query Frame = 0


Query: 15  LWIVA-FTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPP-----------------P 74
           +WI+    L + +S+ Q+  PS+G LCISDC+TCPVIC+ PP                 P
Sbjct: 20  IWIMGLLMLVNVTSEDQIGSPSSGSLCISDCATCPVICSPPPPLQESYSPPSPPVQHHSP 79

Query: 75  PLSYI--PPPPPNFYGGFN---MAPPATPSYYLWGPPPPVANYFLGARPSG----EMPQT 126
           P SY   PPPPP+          +PP   SY  WG PPP   YF    PSG     MP  
Sbjct: 80  PKSYYANPPPPPSPPSSLTPPPASPPKASSYSSWGTPPPPFMYFNNMPPSGNINNRMPPM 139

[Close]

BLAST of CsaV3_4G035810 vs. ExPASy TrEMBL
Match: A0A5B7BE41 (Putative extensin (Fragment) OS=Davidia involucrata OX=16924 GN=Din_036641 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.6e-16
Identity = 51/110 (46.36%), Postives = 68/110 (61.82%), Query Frame = 0


Query: 26  SSKAQMAVPSTGQLCISDCSTCPVICTAPPPPL-SYIPPPPP----------NFYGGFNM 85
           +S  Q ++P+ G LCISDC+TCPVIC+ PPPP+ S +PPP P          ++Y     
Sbjct: 39  TSADQTSIPAAGLLCISDCATCPVICSPPPPPVESKLPPPSPPPVHHSPPQYSYYFQSPP 98

Query: 86  APPATPSYYLWGPPPPVANYFLGARPSGEMPQTVGPRDYSYPYYYFYSSN 125
            PP  PSY  WG  PP  + ++   PS +MP  +  R+YSYPYYYFY+SN
Sbjct: 99  PPPPPPSYMSWGATPPPPSGYMNI-PSAQMPPGMEQRNYSYPYYYFYASN 147

[Close]

BLAST of CsaV3_4G035810 vs. TAIR 10
Match: AT5G11990.1 (proline-rich family protein )

HSP 1 Score: 47.8 bits (112), Expect = 9.6e-06
Identity = 44/149 (29.53%), Postives = 63/149 (42.28%), Query Frame = 0


Query: 15  LWIVAFTLFSASSKAQMAVPSTGQLCISDCSTCPVICTAPPP--------------PLSY 74
           L +V     S S +  +  P    LCIS+CSTCP IC+ PP               PLS 
Sbjct: 10  LVMVMVVASSPSDQTNVLTP----LCISECSTCPTICSPPPSKPSPSMSPPPSPSLPLSS 69

Query: 75  IPPPPPNFYGG-------------FNMAPPATPSYYLW---GPPPPVANYFLGARPS--- 126
            PPPPP                    +  P  P +Y +    PPPP++    G+ PS   
Sbjct: 70  SPPPPPPHKHSPPPLSQSLSPPPLITVIHPPPPRFYYFESTPPPPPLSPDGKGSPPSVPS 129

The following BLAST results are available for this feature:

BLAST of CsaV3_4G035810 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649911.1	5.2e-86	100.00	hypothetical protein Csa_012510 [Cucumis sativus]	[more]
KAG6608366.1	4.7e-39	67.72	Conserved oligomeric Golgi complex subunit 8, partial [Cucurbita argyrosperma su...	[more]
XP_022940707.1	6.2e-39	67.72	leucine-rich repeat extensin-like protein 2 [Cucurbita moschata]	[more]
XP_022981722.1	1.4e-35	63.43	leucine-rich repeat extensin-like protein 1 [Cucurbita maxima]	[more]
XP_023523402.1	1.9e-32	69.64	leucine-rich repeat extensin-like protein 2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_4G035810 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G035810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L054	4.0e-68	100.00	Microtubule associated protein (Ase1) OS=Cucumis sativus OX=3659 GN=Csa_4G646240...	[more]
A0A6J1FKD3	3.0e-39	67.72	leucine-rich repeat extensin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1IUS7	6.9e-36	63.43	leucine-rich repeat extensin-like protein 1 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A2N9HA71	1.9e-17	43.48	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS39158 PE=4 SV=1	[more]
A0A5B7BE41	1.6e-16	46.36	Putative extensin (Fragment) OS=Davidia involucrata OX=16924 GN=Din_036641 PE=4 ...	[more]

BLAST of CsaV3_4G035810 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G11990.1	9.6e-06	29.53	proline-rich family protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G035810.1	CsaV3_4G035810.1	mRNA