CsaV3_4G035680 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G035680
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr4: 25107504 .. 25107749 (-)
RNA-Seq Expression	CsaV3_4G035680
Synteny	CsaV3_4G035680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAAGGGGAAGGAGAAGAAGGTCGGTGAAGAGAAATGGAGAAGGGGAAATATCTTGGAAGGGTTAGGTCAGGATCGAGCTTCTTGTCCTGTGGATCCAAATAACGAAAGGGATTCGAAGAAGGATGGAGTCAAAAGAGAGGGGCATAACCGGCATTTACAAATTTTGATATTGCTCTGTAATGGTCAGGAAGCGTTGCGACAATTGCAGAACCCATCTGACTGGAGTAGATTTTCCCCATAA

mRNA sequence

ATGGCTAAGGGGAAGGAGAAGAAGGTCGGTGAAGAGAAATGGAGAAGGGGAAATATCTTGGAAGGGTTAGGTCAGGATCGAGCTTCTTGTCCTGTGGATCCAAATAACGAAAGGGATTCGAAGAAGGATGGAGTCAAAAGAGAGGGGCATAACCGGCATTTACAAATTTTGATATTGCTCTGTAATGGTCAGGAAGCGTTGCGACAATTGCAGAACCCATCTGACTGGAGTAGATTTTCCCCATAA

Coding sequence (CDS)

ATGGCTAAGGGGAAGGAGAAGAAGGTCGGTGAAGAGAAATGGAGAAGGGGAAATATCTTGGAAGGGTTAGGTCAGGATCGAGCTTCTTGTCCTGTGGATCCAAATAACGAAAGGGATTCGAAGAAGGATGGAGTCAAAAGAGAGGGGCATAACCGGCATTTACAAATTTTGATATTGCTCTGTAATGGTCAGGAAGCGTTGCGACAATTGCAGAACCCATCTGACTGGAGTAGATTTTCCCCATAA

Protein sequence

MAKGKEKKVGEEKWRRGNILEGLGQDRASCPVDPNNERDSKKDGVKREGHNRHLQILILLCNGQEALRQLQNPSDWSRFSP*

Homology

[Close]

BLAST of CsaV3_4G035680 vs. NCBI nr
Match: KGN55338.1 (hypothetical protein Csa_012972 [Cucumis sativus])

HSP 1 Score: 172.6 bits (436), Expect = 1.4e-39
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MAKGKEKKVGEEKWRRGNILEGLGQDRASCPVDPNNERDSKKDGVKREGHNRHLQILILL 60
          MAKGKEKKVGEEKWRRGNILEGLGQDRASCPVDPNNERDSKKDGVKREGHNRHLQILILL
Sbjct: 1  MAKGKEKKVGEEKWRRGNILEGLGQDRASCPVDPNNERDSKKDGVKREGHNRHLQILILL 60

Query: 61 CNGQEALRQLQNPSDWSRFSP 82
          CNGQEALRQLQNPSDWSRFSP
Sbjct: 61 CNGQEALRQLQNPSDWSRFSP 81

[Close]

BLAST of CsaV3_4G035680 vs. ExPASy TrEMBL
Match: A0A0A0L0Q2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G646120 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 7.0e-40
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MAKGKEKKVGEEKWRRGNILEGLGQDRASCPVDPNNERDSKKDGVKREGHNRHLQILILL 60
          MAKGKEKKVGEEKWRRGNILEGLGQDRASCPVDPNNERDSKKDGVKREGHNRHLQILILL
Sbjct: 1  MAKGKEKKVGEEKWRRGNILEGLGQDRASCPVDPNNERDSKKDGVKREGHNRHLQILILL 60

Query: 61 CNGQEALRQLQNPSDWSRFSP 82
          CNGQEALRQLQNPSDWSRFSP
Sbjct: 61 CNGQEALRQLQNPSDWSRFSP 81

The following BLAST results are available for this feature:

BLAST of CsaV3_4G035680 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55338.1	1.4e-39	100.00	hypothetical protein Csa_012972 [Cucumis sativus]	[more]

BLAST of CsaV3_4G035680 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G035680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0Q2	7.0e-40	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G646120 PE=4 SV=1	[more]

BLAST of CsaV3_4G035680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..48

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G035680.1	CsaV3_4G035680.1	mRNA