CsaV3_4G033750 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G033750
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionRING-type domain-containing protein
Locationchr4: 23921155 .. 23921403 (-)
RNA-Seq ExpressionCsaV3_4G033750
SyntenyCsaV3_4G033750
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGAGGAGCGGAGGTTGAAGCGGGCGGAGAAGTTGCCGTTGCCACCGACTGTGAGGTTTGGGAGCGAGAAAATGGTGAGGAGGAGGAGTGAGGAGGAATGCGCGATATGTTTGGAGGAGTTTTTGATCGGAGAAAATTGTCAGGCGTTGCCGGAGTGTAATCATTTTTTTCATTCGGAGTGTATTGATGTTTGGTTTAGCAAGAAATTTACGTGCCCCATCTGCCGTAATTGTGTTGCAGCTTAG

mRNA sequence

ATGGCGGAGGAGCGGAGGTTGAAGCGGGCGGAGAAGTTGCCGTTGCCACCGACTGTGAGGTTTGGGAGCGAGAAAATGGTGAGGAGGAGGAGTGAGGAGGAATGCGCGATATGTTTGGAGGAGTTTTTGATCGGAGAAAATTGTCAGGCGTTGCCGGAGTGTAATCATTTTTTTCATTCGGAGTGTATTGATGTTTGGTTTAGCAAGAAATTTACGTGCCCCATCTGCCGTAATTGTGTTGCAGCTTAG

Coding sequence (CDS)

ATGGCGGAGGAGCGGAGGTTGAAGCGGGCGGAGAAGTTGCCGTTGCCACCGACTGTGAGGTTTGGGAGCGAGAAAATGGTGAGGAGGAGGAGTGAGGAGGAATGCGCGATATGTTTGGAGGAGTTTTTGATCGGAGAAAATTGTCAGGCGTTGCCGGAGTGTAATCATTTTTTTCATTCGGAGTGTATTGATGTTTGGTTTAGCAAGAAATTTACGTGCCCCATCTGCCGTAATTGTGTTGCAGCTTAG

Protein sequence

MAEERRLKRAEKLPLPPTVRFGSEKMVRRRSEEECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA*
Homology
BLAST of CsaV3_4G033750 vs. NCBI nr
Match: KAE8649847.1 (hypothetical protein Csa_012715 [Cucumis sativus])

HSP 1 Score: 178.7 bits (452), Expect = 2.0e-41
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0

Query: 1  MAEERRLKRAEKLPLPPTVRFGSEKMVRRRSEEECAICLEEFLIGENCQALPECNHFFHS 60
          MAEERRLKRAEKLPLPPTVRFGSEKMVRRRSEEECAICLEEFLIGENCQALPECNHFFHS
Sbjct: 1  MAEERRLKRAEKLPLPPTVRFGSEKMVRRRSEEECAICLEEFLIGENCQALPECNHFFHS 60

Query: 61 ECIDVWFSKKFTCPICRNCVAA 83
          ECIDVWFSKKFTCPICRNCVAA
Sbjct: 61 ECIDVWFSKKFTCPICRNCVAA 82

BLAST of CsaV3_4G033750 vs. NCBI nr
Match: XP_031740449.1 (RING-H2 finger protein ATL39-like [Cucumis sativus])

HSP 1 Score: 178.7 bits (452), Expect = 2.0e-41
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0

Query: 1   MAEERRLKRAEKLPLPPTVRFGSEKMVRRRSEEECAICLEEFLIGENCQALPECNHFFHS 60
           MAEERRLKRAEKLPLPPTVRFGSEKMVRRRSEEECAICLEEFLIGENCQALPECNHFFHS
Sbjct: 78  MAEERRLKRAEKLPLPPTVRFGSEKMVRRRSEEECAICLEEFLIGENCQALPECNHFFHS 137

Query: 61  ECIDVWFSKKFTCPICRNCVAA 83
           ECIDVWFSKKFTCPICRNCVAA
Sbjct: 138 ECIDVWFSKKFTCPICRNCVAA 159

BLAST of CsaV3_4G033750 vs. NCBI nr
Match: KAA0064334.1 (RING-H2 finger protein ATL39-like [Cucumis melo var. makuwa])

HSP 1 Score: 171.4 bits (433), Expect = 3.3e-39
Identity = 77/82 (93.90%), Postives = 81/82 (98.78%), Query Frame = 0

Query: 1   MAEERRLKRAEKLPLPPTVRFGSEKMVRRRSEEECAICLEEFLIGENCQALPECNHFFHS 60
           MAEERR+KRAEKLPLPPTV+FGSEKMVRRRSEEECAICLEEFL GENCQALPEC+HFFHS
Sbjct: 117 MAEERRMKRAEKLPLPPTVKFGSEKMVRRRSEEECAICLEEFLAGENCQALPECSHFFHS 176

Query: 61  ECIDVWFSKKFTCPICRNCVAA 83
           ECI+VWFSKKFTCPICRNCVAA
Sbjct: 177 ECIEVWFSKKFTCPICRNCVAA 198

BLAST of CsaV3_4G033750 vs. NCBI nr
Match: XP_008453063.1 (PREDICTED: RING-H2 finger protein ATL39-like [Cucumis melo] >TYK20253.1 RING-H2 finger protein ATL39-like [Cucumis melo var. makuwa])

HSP 1 Score: 171.4 bits (433), Expect = 3.3e-39
Identity = 77/82 (93.90%), Postives = 81/82 (98.78%), Query Frame = 0

Query: 1   MAEERRLKRAEKLPLPPTVRFGSEKMVRRRSEEECAICLEEFLIGENCQALPECNHFFHS 60
           MAEERR+KRAEKLPLPPTV+FGSEKMVRRRSEEECAICLEEFL GENCQALPEC+HFFHS
Sbjct: 78  MAEERRMKRAEKLPLPPTVKFGSEKMVRRRSEEECAICLEEFLAGENCQALPECSHFFHS 137

Query: 61  ECIDVWFSKKFTCPICRNCVAA 83
           ECI+VWFSKKFTCPICRNCVAA
Sbjct: 138 ECIEVWFSKKFTCPICRNCVAA 159

BLAST of CsaV3_4G033750 vs. NCBI nr
Match: XP_022936829.1 (RING-H2 finger protein ATL39-like [Cucurbita moschata])

HSP 1 Score: 152.5 bits (384), Expect = 1.6e-33
Identity = 68/82 (82.93%), Postives = 76/82 (92.68%), Query Frame = 0

Query: 1   MAEERRLKRAEKLPLPPTVRFGSEKMVRRRSEEECAICLEEFLIGENCQALPECNHFFHS 60
           M EERR++RAEK  +P  VRFGSE+MVRRRSEEECAICLEEF+ GENCQALPECNHFFHS
Sbjct: 75  MGEERRVRRAEK--MPAAVRFGSERMVRRRSEEECAICLEEFMAGENCQALPECNHFFHS 134

Query: 61  ECIDVWFSKKFTCPICRNCVAA 83
           +CIDVWFSKKFTCPICR+C+AA
Sbjct: 135 DCIDVWFSKKFTCPICRHCIAA 154

BLAST of CsaV3_4G033750 vs. ExPASy Swiss-Prot
Match: P0C034 (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.6e-12
Identity = 27/49 (55.10%), Postives = 34/49 (69.39%), Query Frame = 0

Query: 32  EEECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCV 81
           +EEC ICL +F+ GE  + LP+CNH FH  CID W  +  TCP CRNC+
Sbjct: 132 DEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQHLTCPKCRNCL 180

BLAST of CsaV3_4G033750 vs. ExPASy Swiss-Prot
Match: Q9XF63 (RING-H2 finger protein ATL3 OS=Arabidopsis thaliana OX=3702 GN=ATL3 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.6e-12
Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = 0

Query: 34  ECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCV 81
           EC+ICL E + G+  + LP+CNH FH ECID+WF    TCPICRN V
Sbjct: 126 ECSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRNTV 172

BLAST of CsaV3_4G033750 vs. ExPASy Swiss-Prot
Match: Q9LS99 (RING-H2 finger protein ATL77 OS=Arabidopsis thaliana OX=3702 GN=ATL77 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.6e-12
Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = 0

Query: 33  EECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCV 81
           EEC ICL +F+ GE  + LP+CNH FH  CID W ++  TCP CR+C+
Sbjct: 128 EECVICLSDFVAGEQLRVLPKCNHGFHLRCIDKWLTQHMTCPKCRHCL 175

BLAST of CsaV3_4G033750 vs. ExPASy Swiss-Prot
Match: P0C035 (RING-H2 finger protein ATL60 OS=Arabidopsis thaliana OX=3702 GN=ATL60 PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 6.0e-12
Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 0

Query: 34  ECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA 83
           ECA+CL + + G+  + LP CNH FH +CID+WF    TCP+CRN V +
Sbjct: 119 ECAVCLSDLVDGDKARVLPRCNHGFHVDCIDMWFQSHSTCPLCRNTVGS 167

BLAST of CsaV3_4G033750 vs. ExPASy Swiss-Prot
Match: Q6NML0 (E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana OX=3702 GN=ATL76 PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.8e-11
Identity = 26/48 (54.17%), Postives = 32/48 (66.67%), Query Frame = 0

Query: 33  EECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCV 81
           EEC ICL +F+ GE  + LP+CNH FH  CID W     TCP CR+C+
Sbjct: 133 EECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQHHLTCPKCRHCL 180

BLAST of CsaV3_4G033750 vs. ExPASy TrEMBL
Match: A0A0A0L062 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G637730 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 9.9e-42
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0

Query: 1   MAEERRLKRAEKLPLPPTVRFGSEKMVRRRSEEECAICLEEFLIGENCQALPECNHFFHS 60
           MAEERRLKRAEKLPLPPTVRFGSEKMVRRRSEEECAICLEEFLIGENCQALPECNHFFHS
Sbjct: 78  MAEERRLKRAEKLPLPPTVRFGSEKMVRRRSEEECAICLEEFLIGENCQALPECNHFFHS 137

Query: 61  ECIDVWFSKKFTCPICRNCVAA 83
           ECIDVWFSKKFTCPICRNCVAA
Sbjct: 138 ECIDVWFSKKFTCPICRNCVAA 159

BLAST of CsaV3_4G033750 vs. ExPASy TrEMBL
Match: A0A5A7VAT0 (RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G00330 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.6e-39
Identity = 77/82 (93.90%), Postives = 81/82 (98.78%), Query Frame = 0

Query: 1   MAEERRLKRAEKLPLPPTVRFGSEKMVRRRSEEECAICLEEFLIGENCQALPECNHFFHS 60
           MAEERR+KRAEKLPLPPTV+FGSEKMVRRRSEEECAICLEEFL GENCQALPEC+HFFHS
Sbjct: 117 MAEERRMKRAEKLPLPPTVKFGSEKMVRRRSEEECAICLEEFLAGENCQALPECSHFFHS 176

Query: 61  ECIDVWFSKKFTCPICRNCVAA 83
           ECI+VWFSKKFTCPICRNCVAA
Sbjct: 177 ECIEVWFSKKFTCPICRNCVAA 198

BLAST of CsaV3_4G033750 vs. ExPASy TrEMBL
Match: A0A5D3D9M0 (RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003920 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.6e-39
Identity = 77/82 (93.90%), Postives = 81/82 (98.78%), Query Frame = 0

Query: 1   MAEERRLKRAEKLPLPPTVRFGSEKMVRRRSEEECAICLEEFLIGENCQALPECNHFFHS 60
           MAEERR+KRAEKLPLPPTV+FGSEKMVRRRSEEECAICLEEFL GENCQALPEC+HFFHS
Sbjct: 78  MAEERRMKRAEKLPLPPTVKFGSEKMVRRRSEEECAICLEEFLAGENCQALPECSHFFHS 137

Query: 61  ECIDVWFSKKFTCPICRNCVAA 83
           ECI+VWFSKKFTCPICRNCVAA
Sbjct: 138 ECIEVWFSKKFTCPICRNCVAA 159

BLAST of CsaV3_4G033750 vs. ExPASy TrEMBL
Match: A0A1S3BVC7 (RING-H2 finger protein ATL39-like OS=Cucumis melo OX=3656 GN=LOC103493886 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.6e-39
Identity = 77/82 (93.90%), Postives = 81/82 (98.78%), Query Frame = 0

Query: 1   MAEERRLKRAEKLPLPPTVRFGSEKMVRRRSEEECAICLEEFLIGENCQALPECNHFFHS 60
           MAEERR+KRAEKLPLPPTV+FGSEKMVRRRSEEECAICLEEFL GENCQALPEC+HFFHS
Sbjct: 78  MAEERRMKRAEKLPLPPTVKFGSEKMVRRRSEEECAICLEEFLAGENCQALPECSHFFHS 137

Query: 61  ECIDVWFSKKFTCPICRNCVAA 83
           ECI+VWFSKKFTCPICRNCVAA
Sbjct: 138 ECIEVWFSKKFTCPICRNCVAA 159

BLAST of CsaV3_4G033750 vs. ExPASy TrEMBL
Match: A0A6J1IG67 (RING-H2 finger protein ATL39-like OS=Cucurbita maxima OX=3661 GN=LOC111476945 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 7.6e-34
Identity = 68/82 (82.93%), Postives = 76/82 (92.68%), Query Frame = 0

Query: 1   MAEERRLKRAEKLPLPPTVRFGSEKMVRRRSEEECAICLEEFLIGENCQALPECNHFFHS 60
           M EERR++RAEK  +P  VRFGSE+MVRRRSEEECAICLEEF+ GENCQALPECNHFFHS
Sbjct: 75  MGEERRVRRAEK--MPAAVRFGSERMVRRRSEEECAICLEEFMAGENCQALPECNHFFHS 134

Query: 61  ECIDVWFSKKFTCPICRNCVAA 83
           +CIDVWFSKKFTCPICR+C+AA
Sbjct: 135 DCIDVWFSKKFTCPICRHCIAA 154

BLAST of CsaV3_4G033750 vs. TAIR 10
Match: AT1G49220.1 (RING/U-box superfamily protein )

HSP 1 Score: 73.2 bits (178), Expect = 1.1e-13
Identity = 27/49 (55.10%), Postives = 34/49 (69.39%), Query Frame = 0

Query: 32  EEECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCV 81
           +EEC ICL +F+ GE  + LP+CNH FH  CID W  +  TCP CRNC+
Sbjct: 132 DEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQHLTCPKCRNCL 180

BLAST of CsaV3_4G033750 vs. TAIR 10
Match: AT1G72310.1 (RING/U-box superfamily protein )

HSP 1 Score: 73.2 bits (178), Expect = 1.1e-13
Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = 0

Query: 34  ECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCV 81
           EC+ICL E + G+  + LP+CNH FH ECID+WF    TCPICRN V
Sbjct: 126 ECSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRNTV 172

BLAST of CsaV3_4G033750 vs. TAIR 10
Match: AT3G18773.1 (RING/U-box superfamily protein )

HSP 1 Score: 71.6 bits (174), Expect = 3.3e-13
Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = 0

Query: 33  EECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCV 81
           EEC ICL +F+ GE  + LP+CNH FH  CID W ++  TCP CR+C+
Sbjct: 128 EECVICLSDFVAGEQLRVLPKCNHGFHLRCIDKWLTQHMTCPKCRHCL 175

BLAST of CsaV3_4G033750 vs. TAIR 10
Match: AT1G53820.1 (RING/U-box superfamily protein )

HSP 1 Score: 71.2 bits (173), Expect = 4.3e-13
Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 0

Query: 34  ECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA 83
           ECA+CL + + G+  + LP CNH FH +CID+WF    TCP+CRN V +
Sbjct: 119 ECAVCLSDLVDGDKARVLPRCNHGFHVDCIDMWFQSHSTCPLCRNTVGS 167

BLAST of CsaV3_4G033750 vs. TAIR 10
Match: AT1G49210.1 (RING/U-box superfamily protein )

HSP 1 Score: 69.7 bits (169), Expect = 1.2e-12
Identity = 26/48 (54.17%), Postives = 32/48 (66.67%), Query Frame = 0

Query: 33  EECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCV 81
           EEC ICL +F+ GE  + LP+CNH FH  CID W     TCP CR+C+
Sbjct: 133 EECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQHHLTCPKCRHCL 180

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8649847.12.0e-41100.00hypothetical protein Csa_012715 [Cucumis sativus][more]
XP_031740449.12.0e-41100.00RING-H2 finger protein ATL39-like [Cucumis sativus][more]
KAA0064334.13.3e-3993.90RING-H2 finger protein ATL39-like [Cucumis melo var. makuwa][more]
XP_008453063.13.3e-3993.90PREDICTED: RING-H2 finger protein ATL39-like [Cucumis melo] >TYK20253.1 RING-H2 ... [more]
XP_022936829.11.6e-3382.93RING-H2 finger protein ATL39-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
P0C0341.6e-1255.10RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1[more]
Q9XF631.6e-1259.57RING-H2 finger protein ATL3 OS=Arabidopsis thaliana OX=3702 GN=ATL3 PE=2 SV=1[more]
Q9LS994.6e-1254.17RING-H2 finger protein ATL77 OS=Arabidopsis thaliana OX=3702 GN=ATL77 PE=2 SV=1[more]
P0C0356.0e-1251.02RING-H2 finger protein ATL60 OS=Arabidopsis thaliana OX=3702 GN=ATL60 PE=2 SV=1[more]
Q6NML01.8e-1154.17E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana OX=3702 GN=ATL76 PE=1 ... [more]
Match NameE-valueIdentityDescription
A0A0A0L0629.9e-42100.00RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G637730 P... [more]
A0A5A7VAT01.6e-3993.90RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3D9M01.6e-3993.90RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A1S3BVC71.6e-3993.90RING-H2 finger protein ATL39-like OS=Cucumis melo OX=3656 GN=LOC103493886 PE=4 S... [more]
A0A6J1IG677.6e-3482.93RING-H2 finger protein ATL39-like OS=Cucurbita maxima OX=3661 GN=LOC111476945 PE... [more]
Match NameE-valueIdentityDescription
AT1G49220.11.1e-1355.10RING/U-box superfamily protein [more]
AT1G72310.11.1e-1359.57RING/U-box superfamily protein [more]
AT3G18773.13.3e-1354.17RING/U-box superfamily protein [more]
AT1G53820.14.3e-1351.02RING/U-box superfamily protein [more]
AT1G49210.11.2e-1254.17RING/U-box superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 35..76
e-value: 1.3E-6
score: 38.0
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 34..77
e-value: 1.1E-13
score: 51.3
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 35..77
score: 12.371254
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 9..82
e-value: 1.7E-19
score: 70.8
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 5..80
NoneNo IPR availablePANTHERPTHR14155:SF493TRANSCRIPTION FACTOR C2H2 FAMILY-RELATEDcoord: 5..80
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 30..80

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G033750.1CsaV3_4G033750.1mRNA