CsaV3_4G033750 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGGAGGAGCGGAGGTTGAAGCGGGCGGAGAAGTTGCCGTTGCCACCGACTGTGAGGTTTGGGAGCGAGAAAATGGTGAGGAGGAGGAGTGAGGAGGAATGCGCGATATGTTTGGAGGAGTTTTTGATCGGAGAAAATTGTCAGGCGTTGCCGGAGTGTAATCATTTTTTTCATTCGGAGTGTATTGATGTTTGGTTTAGCAAGAAATTTACGTGCCCCATCTGCCGTAATTGTGTTGCAGCTTAG ATGGCGGAGGAGCGGAGGTTGAAGCGGGCGGAGAAGTTGCCGTTGCCACCGACTGTGAGGTTTGGGAGCGAGAAAATGGTGAGGAGGAGGAGTGAGGAGGAATGCGCGATATGTTTGGAGGAGTTTTTGATCGGAGAAAATTGTCAGGCGTTGCCGGAGTGTAATCATTTTTTTCATTCGGAGTGTATTGATGTTTGGTTTAGCAAGAAATTTACGTGCCCCATCTGCCGTAATTGTGTTGCAGCTTAG ATGGCGGAGGAGCGGAGGTTGAAGCGGGCGGAGAAGTTGCCGTTGCCACCGACTGTGAGGTTTGGGAGCGAGAAAATGGTGAGGAGGAGGAGTGAGGAGGAATGCGCGATATGTTTGGAGGAGTTTTTGATCGGAGAAAATTGTCAGGCGTTGCCGGAGTGTAATCATTTTTTTCATTCGGAGTGTATTGATGTTTGGTTTAGCAAGAAATTTACGTGCCCCATCTGCCGTAATTGTGTTGCAGCTTAG MAEERRLKRAEKLPLPPTVRFGSEKMVRRRSEEECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA* Homology
BLAST of CsaV3_4G033750 vs. NCBI nr
Match: KAE8649847.1 (hypothetical protein Csa_012715 [Cucumis sativus]) HSP 1 Score: 178.7 bits (452), Expect = 2.0e-41 Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0
BLAST of CsaV3_4G033750 vs. NCBI nr
Match: XP_031740449.1 (RING-H2 finger protein ATL39-like [Cucumis sativus]) HSP 1 Score: 178.7 bits (452), Expect = 2.0e-41 Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0
BLAST of CsaV3_4G033750 vs. NCBI nr
Match: KAA0064334.1 (RING-H2 finger protein ATL39-like [Cucumis melo var. makuwa]) HSP 1 Score: 171.4 bits (433), Expect = 3.3e-39 Identity = 77/82 (93.90%), Postives = 81/82 (98.78%), Query Frame = 0
BLAST of CsaV3_4G033750 vs. NCBI nr
Match: XP_008453063.1 (PREDICTED: RING-H2 finger protein ATL39-like [Cucumis melo] >TYK20253.1 RING-H2 finger protein ATL39-like [Cucumis melo var. makuwa]) HSP 1 Score: 171.4 bits (433), Expect = 3.3e-39 Identity = 77/82 (93.90%), Postives = 81/82 (98.78%), Query Frame = 0
BLAST of CsaV3_4G033750 vs. NCBI nr
Match: XP_022936829.1 (RING-H2 finger protein ATL39-like [Cucurbita moschata]) HSP 1 Score: 152.5 bits (384), Expect = 1.6e-33 Identity = 68/82 (82.93%), Postives = 76/82 (92.68%), Query Frame = 0
BLAST of CsaV3_4G033750 vs. ExPASy Swiss-Prot
Match: P0C034 (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1) HSP 1 Score: 73.2 bits (178), Expect = 1.6e-12 Identity = 27/49 (55.10%), Postives = 34/49 (69.39%), Query Frame = 0
BLAST of CsaV3_4G033750 vs. ExPASy Swiss-Prot
Match: Q9XF63 (RING-H2 finger protein ATL3 OS=Arabidopsis thaliana OX=3702 GN=ATL3 PE=2 SV=1) HSP 1 Score: 73.2 bits (178), Expect = 1.6e-12 Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = 0
BLAST of CsaV3_4G033750 vs. ExPASy Swiss-Prot
Match: Q9LS99 (RING-H2 finger protein ATL77 OS=Arabidopsis thaliana OX=3702 GN=ATL77 PE=2 SV=1) HSP 1 Score: 71.6 bits (174), Expect = 4.6e-12 Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = 0
BLAST of CsaV3_4G033750 vs. ExPASy Swiss-Prot
Match: P0C035 (RING-H2 finger protein ATL60 OS=Arabidopsis thaliana OX=3702 GN=ATL60 PE=2 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 6.0e-12 Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 0
BLAST of CsaV3_4G033750 vs. ExPASy Swiss-Prot
Match: Q6NML0 (E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana OX=3702 GN=ATL76 PE=1 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 1.8e-11 Identity = 26/48 (54.17%), Postives = 32/48 (66.67%), Query Frame = 0
BLAST of CsaV3_4G033750 vs. ExPASy TrEMBL
Match: A0A0A0L062 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G637730 PE=4 SV=1) HSP 1 Score: 178.7 bits (452), Expect = 9.9e-42 Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0
BLAST of CsaV3_4G033750 vs. ExPASy TrEMBL
Match: A0A5A7VAT0 (RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G00330 PE=4 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 1.6e-39 Identity = 77/82 (93.90%), Postives = 81/82 (98.78%), Query Frame = 0
BLAST of CsaV3_4G033750 vs. ExPASy TrEMBL
Match: A0A5D3D9M0 (RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003920 PE=4 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 1.6e-39 Identity = 77/82 (93.90%), Postives = 81/82 (98.78%), Query Frame = 0
BLAST of CsaV3_4G033750 vs. ExPASy TrEMBL
Match: A0A1S3BVC7 (RING-H2 finger protein ATL39-like OS=Cucumis melo OX=3656 GN=LOC103493886 PE=4 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 1.6e-39 Identity = 77/82 (93.90%), Postives = 81/82 (98.78%), Query Frame = 0
BLAST of CsaV3_4G033750 vs. ExPASy TrEMBL
Match: A0A6J1IG67 (RING-H2 finger protein ATL39-like OS=Cucurbita maxima OX=3661 GN=LOC111476945 PE=4 SV=1) HSP 1 Score: 152.5 bits (384), Expect = 7.6e-34 Identity = 68/82 (82.93%), Postives = 76/82 (92.68%), Query Frame = 0
BLAST of CsaV3_4G033750 vs. TAIR 10
Match: AT1G49220.1 (RING/U-box superfamily protein ) HSP 1 Score: 73.2 bits (178), Expect = 1.1e-13 Identity = 27/49 (55.10%), Postives = 34/49 (69.39%), Query Frame = 0
BLAST of CsaV3_4G033750 vs. TAIR 10
Match: AT1G72310.1 (RING/U-box superfamily protein ) HSP 1 Score: 73.2 bits (178), Expect = 1.1e-13 Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = 0
BLAST of CsaV3_4G033750 vs. TAIR 10
Match: AT3G18773.1 (RING/U-box superfamily protein ) HSP 1 Score: 71.6 bits (174), Expect = 3.3e-13 Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = 0
BLAST of CsaV3_4G033750 vs. TAIR 10
Match: AT1G53820.1 (RING/U-box superfamily protein ) HSP 1 Score: 71.2 bits (173), Expect = 4.3e-13 Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 0
BLAST of CsaV3_4G033750 vs. TAIR 10
Match: AT1G49210.1 (RING/U-box superfamily protein ) HSP 1 Score: 69.7 bits (169), Expect = 1.2e-12 Identity = 26/48 (54.17%), Postives = 32/48 (66.67%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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