CsaV3_4G033590 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G033590
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4: 23794559 .. 23796932 (-)
RNA-Seq ExpressionCsaV3_4G033590
SyntenyCsaV3_4G033590
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTACAACTCTCCACGTTTCATCATTAACATAATAATTGTTAATAAAAACGCACTCTTAAGAGGTAAAAATGGAAAAAATAAAAAGGAGAAGAAGAAGATCCACCGATTGAAGTTTACCGTAAATTGGAAAAATGGCTTACTCCAATCGATCTGTTGTTGCTTTCCGTTTTTCAAAAGCTTTGTTTGAACAATGCCATGGCGCTGCCGCTGCCGCTGCTGCTGTTCCTCCCTTCTCCCCCGCTCCCGCCGTTTCTATTTCTTATAAGGTAACTTTTGTAGGAATTGAAAACCAAAATTTTACTTTTTAATGTCCCCTTGCGTATGTTCTGCTTTTCATTTTATGATAGAAAAACCCAACATCCCATTTTGAATTTGATAGTATGATTATTTAAATATTTGTTTTTTGTTCATTTAATTACTATCTATTGATTGATTTTGTTTTCTTTTAATTTTGTTCGTTTGCTTATATACTATTAGGGGGAAGATCTCGATCCTAATAACATTGCTTTGAGAATCAAATTTCGATAATTAGTATGTTAAAGCAAACATTATTAAATAAAAATAGAAATATATAAGGTTAGTGATTGATTCTTTTCTCATTGATTACTTTTAGGGGTGAAAACAAAATCCCACATTGGTTAAGGAATGAAGTGATAAATCTAGGATTGGTTGGAAAAAGAAAGTGATCAAGAAATCACACATATCTCATCAGGTTTAAGATTTTTTTTGCAAAATCACGAGGGTTTATACCCGAAATGGACACACGTTGTCTACAAATAAACGCTTTCGTGGTATTAATTATGAAAGAAAAAGTAGTTTTTAACCCATCGAGCTAGATTCAAAATAAGCTGTTTTTGTAGACAACGTGTGTCCAGCTCGTCCAACTAGGGGGGCGCCATTGTGGCAATAATGTGAGAAGAGATTTGATGATTATAATTTGTCTTCAATTCAGGTTGATACAAGCGAGGAAAGGGACGTGACAGGAGCAAAAGCGGAAGAGCTGATAGCAGAGATGGTCAAAGATGGAAAGGTGAGAAGTACAGTGGAGGTGGCTTATGATGCAACGAAAGGGACGGCGGAGAAGGTGAAGGACACCGTAATTGCAGAGGCAAACGAAAATGTAGTGGACACTACTGAGTACAGAAGCATGGAGAATATGGGTAACTATCAAAAACATCTTACTTTTTTATATATATCTTTGATCCATCACAATTGGGTGATACGCACAAATATGATCAGTTAGCCTCGAATTTGCACAAGAAGCGATTCACATGCAGACTCTTTTCTATCATATTAATACTAGAATTAAATAATTTCTTTATCATGATTAATTTCAAATTAAAAATATTCTTCATTTTAACTATAATTCAATTCAATTCAAACTAACTATTTATTTTTCTTAACTTGAATATGAGCTGCTGTTGAATTTTTATTTTTCTATTTAACTTGACTTAAAACTCAAATTTATATTTTTTTAAAAAAAATTAATATGAGAAATAGTTAATTAAATATGCACGAAGATTTCAAGTGTATACATATCATTTGGAAAAACAAAAATTTGTAGCCAAAATAAACTTCACTTACTGATATCGGTACATGTAAGGCTCAATCGCCATCCCGTTGTACTAATAATAATGTATAATTTTGTATTTAGGTAAAGATATAATCGTGCAAGTCTATATTGTTGACTACTGCTACACAGCTATAGAAGCACAATTGTTAGTGTGGAATGAATCTGATACCTAATGCAAATAGATCAAGAAAATTTGAAAGAGACAAACCCATCATCTGAAATTTTAAGTAAATACTCAAATACATGTTTCTTCCAATTGGAAGTGCTTTTGATAATTTCATTTTCCCTTTTGGAAAGAAAAAATAGATGTTATTATTTATAGCTTTTGATGATCTGATTGATGAAGAAGCTTAAGGTCGTATATTTTCTTGCAGATGATCAGAAGCAATAGTTCTATGGCTTTTTAGCTTCCAACTGTTTGGCAAATATGAAAAAAGGGGATGAAGTTTCTCCATCGTCTTCTTAAATTAAAACCTCTCAATGTTAAGGGGTAATATGAATTTGGTTTGCCTATAATTTTATTGATTATATATAATAATAATTTTTTTTGGTTGTGGATGGGATACAATTTTGAGGATGATCCTATTGCTTCTTATAATATATACATATATATATGGGTTATTGTGTTTGTGAGTCTACCAACGTGATAAAAAAAAACTTGTACAAGTGATCAAATTGATGTGTGTCTGATAGACCTTAGTAGGGATAGAACTCTATCATTACCGTGATAGATATCATGTATAGGAACAAGATAAAATTTAGTCCTGAATTTGAATTAGTGATAGATATCATGTATAGGAA

mRNA sequence

ATGGCTTACTCCAATCGATCTGTTGTTGCTTTCCGTTTTTCAAAAGCTTTGTTTGAACAATGCCATGGCGCTGCCGCTGCCGCTGCTGCTGTTCCTCCCTTCTCCCCCGCTCCCGCCGTTTCTATTTCTTATAAGGTTGATACAAGCGAGGAAAGGGACGTGACAGGAGCAAAAGCGGAAGAGCTGATAGCAGAGATGGTCAAAGATGGAAAGGTGAGAAGTACAGTGGAGGTGGCTTATGATGCAACGAAAGGGACGGCGGAGAAGGTGAAGGACACCGTAATTGCAGAGGCAAACGAAAATGTAGTGGACACTACTGAGTACAGAAGCATGGAGAATATGGATGATCAGAAGCAATAG

Coding sequence (CDS)

ATGGCTTACTCCAATCGATCTGTTGTTGCTTTCCGTTTTTCAAAAGCTTTGTTTGAACAATGCCATGGCGCTGCCGCTGCCGCTGCTGCTGTTCCTCCCTTCTCCCCCGCTCCCGCCGTTTCTATTTCTTATAAGGTTGATACAAGCGAGGAAAGGGACGTGACAGGAGCAAAAGCGGAAGAGCTGATAGCAGAGATGGTCAAAGATGGAAAGGTGAGAAGTACAGTGGAGGTGGCTTATGATGCAACGAAAGGGACGGCGGAGAAGGTGAAGGACACCGTAATTGCAGAGGCAAACGAAAATGTAGTGGACACTACTGAGTACAGAAGCATGGAGAATATGGATGATCAGAAGCAATAG

Protein sequence

MAYSNRSVVAFRFSKALFEQCHGAAAAAAAVPPFSPAPAVSISYKVDTSEERDVTGAKAEELIAEMVKDGKVRSTVEVAYDATKGTAEKVKDTVIAEANENVVDTTEYRSMENMDDQKQ*
Homology
BLAST of CsaV3_4G033590 vs. NCBI nr
Match: XP_004146059.1 (uncharacterized protein LOC101215612 [Cucumis sativus] >KGN55118.1 hypothetical protein Csa_012887 [Cucumis sativus])

HSP 1 Score: 220.7 bits (561), Expect = 6.8e-54
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0

Query: 1   MAYSNRSVVAFRFSKALFEQCHGAAAAAAAVPPFSPAPAVSISYKVDTSEERDVTGAKAE 60
           MAYSNRSVVAFRFSKALFEQCHGAAAAAAAVPPFSPAPAVSISYKVDTSEERDVTGAKAE
Sbjct: 1   MAYSNRSVVAFRFSKALFEQCHGAAAAAAAVPPFSPAPAVSISYKVDTSEERDVTGAKAE 60

Query: 61  ELIAEMVKDGKVRSTVEVAYDATKGTAEKVKDTVIAEANENVVDTTEYRSMENMDDQKQ 120
           ELIAEMVKDGKVRSTVEVAYDATKGTAEKVKDTVIAEANENVVDTTEYRSMENMDDQKQ
Sbjct: 61  ELIAEMVKDGKVRSTVEVAYDATKGTAEKVKDTVIAEANENVVDTTEYRSMENMDDQKQ 119

BLAST of CsaV3_4G033590 vs. NCBI nr
Match: XP_038899913.1 (uncharacterized protein LOC120087104 [Benincasa hispida])

HSP 1 Score: 107.5 bits (267), Expect = 8.4e-20
Identity = 70/114 (61.40%), Postives = 82/114 (71.93%), Query Frame = 0

Query: 1   MAYSNRSVVAFRFSKALFEQCHGAAAAAAAVPPFSPAPAVSISYKVDTSEERDVTGAKAE 60
           MAYSNRS VA R SKALF+  HGAAA+    PP S A A++   ++    + DV  AKAE
Sbjct: 1   MAYSNRS-VALRSSKALFKHRHGAAAS----PPLSGATALN---RLHEESDMDVDRAKAE 60

Query: 61  ELIAEMVKDGKVRSTVEVAYDATKGTAEKVKDTVIAEANENVVDTTEYRSMENM 115
           +L A M  +G + S VEVAYD+TKGTAEKVKDT IAEANENVVDT EYRSM +M
Sbjct: 61  QLRAGMAGEGAMTSIVEVAYDSTKGTAEKVKDTTIAEANENVVDTIEYRSMGDM 106

BLAST of CsaV3_4G033590 vs. NCBI nr
Match: KAA0066826.1 (putative chilling-induced protein [Cucumis melo var. makuwa] >TYK27973.1 putative chilling-induced protein [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 1.5e-13
Identity = 45/51 (88.24%), Postives = 48/51 (94.12%), Query Frame = 0

Query: 66  MVKDGKVRSTVEVAYDATKGTAEKVKDTVIAEANENVVDTTEYRSMENMDD 117
           MV+DG V STVEVAYDATKGT EKVKDTVIAEANENV+DTTEYRSMENMD+
Sbjct: 1   MVEDGAVGSTVEVAYDATKGTTEKVKDTVIAEANENVMDTTEYRSMENMDE 51

BLAST of CsaV3_4G033590 vs. NCBI nr
Match: XP_020418791.1 (uncharacterized protein LOC109949012 [Prunus persica])

HSP 1 Score: 57.8 bits (138), Expect = 7.6e-05
Identity = 31/57 (54.39%), Postives = 44/57 (77.19%), Query Frame = 0

Query: 57  AKAEELIAEMVKDGKVRSTVEVAYDATKGTAEKVKDTVIAEANENVVDTTEYRSMEN 114
           AKAEE+  ++V   K R+  + A+D+TK   +KV DT++AEANENV+DTTEYR+ME+
Sbjct: 88  AKAEEVAEDLVDMAKERT--DFAWDSTKNKTQKVGDTLVAEANENVIDTTEYRNMED 142

BLAST of CsaV3_4G033590 vs. NCBI nr
Match: KAG6607884.1 (hypothetical protein SDJN03_01226, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 55.5 bits (132), Expect = 3.8e-04
Identity = 47/110 (42.73%), Postives = 61/110 (55.45%), Query Frame = 0

Query: 9   VAFRFSKALFEQCHGAAAAAAAVPPFSPAPAVSISYKVDTSEERDVTGAKAEELIAEMVK 68
           +A   S  LF++   +++AAA          +S   +V ++ E   + AKA E       
Sbjct: 12  IALSISNPLFQRRLPSSSAAA-------TSYLSHMRRVGSNVE---SAAKARE-----TT 71

Query: 69  DGKVRSTVEVAYDATKGTAEKVKDTVIAEANENVVDTTEYRSMENMDDQK 119
            G   S  E AYDA  G AEKVK+TVIAEANENV+DT+EYRSME M   K
Sbjct: 72  GGGAESREERAYDAATGKAEKVKETVIAEANENVMDTSEYRSMEEMGSLK 106

BLAST of CsaV3_4G033590 vs. ExPASy TrEMBL
Match: A0A0A0L055 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G631600 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 3.3e-54
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0

Query: 1   MAYSNRSVVAFRFSKALFEQCHGAAAAAAAVPPFSPAPAVSISYKVDTSEERDVTGAKAE 60
           MAYSNRSVVAFRFSKALFEQCHGAAAAAAAVPPFSPAPAVSISYKVDTSEERDVTGAKAE
Sbjct: 1   MAYSNRSVVAFRFSKALFEQCHGAAAAAAAVPPFSPAPAVSISYKVDTSEERDVTGAKAE 60

Query: 61  ELIAEMVKDGKVRSTVEVAYDATKGTAEKVKDTVIAEANENVVDTTEYRSMENMDDQKQ 120
           ELIAEMVKDGKVRSTVEVAYDATKGTAEKVKDTVIAEANENVVDTTEYRSMENMDDQKQ
Sbjct: 61  ELIAEMVKDGKVRSTVEVAYDATKGTAEKVKDTVIAEANENVVDTTEYRSMENMDDQKQ 119

BLAST of CsaV3_4G033590 vs. ExPASy TrEMBL
Match: A0A5D3DWB9 (Putative chilling-induced protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001770 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 7.4e-14
Identity = 45/51 (88.24%), Postives = 48/51 (94.12%), Query Frame = 0

Query: 66  MVKDGKVRSTVEVAYDATKGTAEKVKDTVIAEANENVVDTTEYRSMENMDD 117
           MV+DG V STVEVAYDATKGT EKVKDTVIAEANENV+DTTEYRSMENMD+
Sbjct: 1   MVEDGAVGSTVEVAYDATKGTTEKVKDTVIAEANENVMDTTEYRSMENMDE 51

BLAST of CsaV3_4G033590 vs. ExPASy TrEMBL
Match: A0A6J5UQH8 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS27235 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 5.3e-04
Identity = 28/57 (49.12%), Postives = 44/57 (77.19%), Query Frame = 0

Query: 57  AKAEELIAEMVKDGKVRSTVEVAYDATKGTAEKVKDTVIAEANENVVDTTEYRSMEN 114
           AKA E+  ++V+  K R+  + A+D+TK   +KV DT++AEA+EN++DTTEYR+ME+
Sbjct: 88  AKAAEVAEDLVEMAKERT--DFAWDSTKNKTQKVGDTLVAEADENIIDTTEYRNMED 142

BLAST of CsaV3_4G033590 vs. ExPASy TrEMBL
Match: A0A6P6G3Q0 (uncharacterized protein LOC112488976 OS=Ziziphus jujuba OX=326968 GN=LOC112491368 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 9.1e-04
Identity = 27/61 (44.26%), Postives = 45/61 (73.77%), Query Frame = 0

Query: 54  VTGAKAEELIAEMVKDGKVRSTVEVAYDATKGTAEKVKDTVIAEANENVVDTTEYRSMEN 113
           V   + EE ++EM K+      ++ A+D+ K T +KV+DT++AEA+ENVVDT+EYR++E+
Sbjct: 76  VKATEMEEKLSEMAKE-----AMDTAWDSAKNTTQKVEDTLVAEADENVVDTSEYRAIED 131

Query: 114 M 115
           +
Sbjct: 136 I 131

BLAST of CsaV3_4G033590 vs. ExPASy TrEMBL
Match: A0A5E4ELX8 (PREDICTED: chilling-induced OS=Prunus dulcis OX=3755 GN=ALMOND_2B028045 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 9.1e-04
Identity = 29/57 (50.88%), Postives = 43/57 (75.44%), Query Frame = 0

Query: 57  AKAEELIAEMVKDGKVRSTVEVAYDATKGTAEKVKDTVIAEANENVVDTTEYRSMEN 114
           AKAEE+  ++V   K R+  + A+D+TK   +KV DT++AEA+ NV+DTTEYR+ME+
Sbjct: 88  AKAEEVAEDLVDMAKERT--DFAWDSTKNKTQKVGDTLVAEADGNVIDTTEYRNMED 142

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004146059.16.8e-54100.00uncharacterized protein LOC101215612 [Cucumis sativus] >KGN55118.1 hypothetical ... [more]
XP_038899913.18.4e-2061.40uncharacterized protein LOC120087104 [Benincasa hispida][more]
KAA0066826.11.5e-1388.24putative chilling-induced protein [Cucumis melo var. makuwa] >TYK27973.1 putativ... [more]
XP_020418791.17.6e-0554.39uncharacterized protein LOC109949012 [Prunus persica][more]
KAG6607884.13.8e-0442.73hypothetical protein SDJN03_01226, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L0553.3e-54100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G631600 PE=4 SV=1[more]
A0A5D3DWB97.4e-1488.24Putative chilling-induced protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A6J5UQH85.3e-0449.12Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS27235 PE=4 S... [more]
A0A6P6G3Q09.1e-0444.26uncharacterized protein LOC112488976 OS=Ziziphus jujuba OX=326968 GN=LOC11249136... [more]
A0A5E4ELX89.1e-0450.88PREDICTED: chilling-induced OS=Prunus dulcis OX=3755 GN=ALMOND_2B028045 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G033590.1CsaV3_4G033590.1mRNA