CsaV3_4G033400 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G033400
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Nucleic acid-binding, OB-fold containing protein
Location	chr4: 23646236 .. 23648869 (-)
RNA-Seq Expression	CsaV3_4G033400
Synteny	CsaV3_4G033400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTTCCAAGATTTATAGGTACAATGTTTCATCAAAACATATTGGTTTAGAAAAATGTCACAAAAAGAAAAAAAAAGGCCAAAGAGGAAGAAAGCACAAAGAATGAAGTGAAGAGATGATCGTATTGCTATTGCTATTGCTATATATATAAACACCAATCTCCTAAATTCTCACATTTCACAGCGCCACACACACAGACCTAAATCCGTCGACATAGAAGACAACTTTCGGTCTATTTACTCGGATTCTCATTCAGCTTTCGCATCAATGGCGACAGGGAAATCACCTACGCCGGCATCGCAGGAGCTGCAGCAGACCAATGCAGCGCCTAGACCTGGCCTGAGGAAGCCGGTCTTTGTTAAGATCGAACAGCTCAAACCCGGCACCAATGGTCACACACTAATCGTCAAGGTTGTTAGCTCCAATACCGTCTTGCAGAAGGGTCGATCCGTGTCTCAGCACCTTCGCCAGACGCGGATCGCTGAGTGCCTTGTTGGCGACGAAACTGGAACCATTTTGTTCACTGCGCGTAATGATCAAGGTATGGATTTTTTAATCTTCCACTTCCTGCTGTTTGGTTTCGGGGGGAATTGGGGGAAAATTAGGTTTTTTTTTTTGTTTTTTTAATCTATCGTAGCTGGGGGGGCTAAATCAATGGTTTTTTAGGTTGGGATATTTGAATTATGTACCCTTTAGCGATCATTTTAATGCACTTTTAAACCAATGTTTGGCACAATGATATAATATGAATTCTGAGATGGGTTTTGGAGAATGACGTAGTTCTTGCTGATGTGCTTAAGGAAACTTGGAAGTAGAAACAAGAGGCATCTGTTTTATGAATTGCATAAAGAAGCATTGGTTTTACTCTAATCTGAACTGGATGGGGATTAGAAAGAAATTTACTGTCTTGCACTAGGATTTGTGTTGGGATATGCATGGCTACGAATAATCTAATCCCTTTGTTTTCATGATCTTTATTCATACGCGAGCTTGTTTCGAATTGGAACATTAATTTTTTTAATACTAACTTTATGCTAATGCCCCAAGGGATTAGCATACATTCACAAATACATAGCCTTGTGAAGGGCTTGTGTCTCTTGGTTATAGAGGTTCCAATTTTGATCCTTCGAGTGAGCTTAGTACCAAAAAGTCTTGATGTCTCCAAGGTCCAGGCTCCAAACCTTAGGGCGGGTGCGGGGTGGCCTTGGGTATAGTGAAGAAAGATCCGATTGGTAAGTTGAAGATTTTAACTGAAACTGAAAGTTTGATGTTAAATCCTCACAAATACATAGCCTTGGGTCTGTGAACTGTTGCCACTTGAGTTTTTAGCCTTGAAGTGGAATCTTTGTAAACAAGGAGAATGGGATATTGATATTCATTAGACCGATTTATCATGGTTACCAATACTTGGAAAGCATACTTAAATTTTTTTTATACCTCAGCATTTAAACTTCTCTAAAGTTTTGAATGGGTTATTTTGCTTCCTCAGTTGATCAAGTAAAACCTGGGACAACTATCATTCTTCGAAATGCAAAGATCGACATGTTCAAAGGGTCTATGAGGCTAGCAGTTGACAAATGGGGCCGCATTGAGCTCGCCGATCCTGAAGATTTTGTCGTCAAGGAAGACAATAATCTATCTTTAGTCGAGTATGAACTTGTGAATGTTGCAGAGGAATGAGAAGATACTACTGGAAGGCCAACTTTAAGTATACAACGGTTTGAGATGGCTGATCAGTGAGTTTCCTGGTAATCTGCAGATGTGAATATATAACAACGCTATATTATAATTTTGTGTGGGTGAAGTATTTAAGCGAACAATCCCTTGATTTCTTCTAAAGCTCTATTCCGTCGGTATGACTTACACAAAGCCATGTTTTGTCGGGTAAAGGTATAAATAGGTACTAGTTTGGTACTTTTTACAACTCTGGAAATGTAATAGAGCGTTAGCGACGGCAAAGAATGCTTTTGGTATGCCTTTGATATCATATCTAACATGCAAAGTTTTCAATCTGTTGGGTTTGTATATTGTATATTCTCTGGCAATTCATATTACATGCAGGTTGTGGACAATAACTTGTCCTAGAAGGTGGCTTTACTTTGAGGGCAATAGCAAAAGTCTTTTGGACCAATGTAGACGGTAAACTGTCTCAACTTGTACGAGCATTAGTCTGTGAATTGATCCCTTTAAGTCATACTATTAAAACCTTTTCCATCATTCTAATCTCTTCGTCGAGAGCATATGCCATAACTTGCTGTACATTGGTTGGTCTTCCTGTAAGCTAAGTTTGTTTAGTGATAATCGATTGAACTGCCCTTAGACAGTGGTGGGTTGGGTTGATCCCCACGTCTTCTTCCCCAACCCCCAACCCCCAACCCATTTTTGAACTTGAATTTAATTACATTTGTCTTCTCTCTCAGGAGCGATGGTTATCGTATAGTGTTAGAGAGACACAATTTTGGAAGTTACTAAAGTTGAAATTATATTATTTTACTATTCTATTGAAACACCTTAATCTTATAAATAAAAACAAGCTTTTAGAAAAGCAAAACTTATCTCCTCTCAAAATAGTTTTTGATCTTCAAATAAGTGCTAAACTAACCTATACTATATGACATATCTTTCCCTATGGGTT

mRNA sequence

ATGGCGACAGGGAAATCACCTACGCCGGCATCGCAGGAGCTGCAGCAGACCAATGCAGCGCCTAGACCTGGCCTGAGGAAGCCGGTCTTTGTTAAGATCGAACAGCTCAAACCCGGCACCAATGGTCACACACTAATCGTCAAGGTTGTTAGCTCCAATACCGTCTTGCAGAAGGGTCGATCCGTGTCTCAGCACCTTCGCCAGACGCGGATCGCTGAGTGCCTTGTTGGCGACGAAACTGGAACCATTTTGTTCACTGCGCGTAATGATCAAGTTGATCAAGTAAAACCTGGGACAACTATCATTCTTCGAAATGCAAAGATCGACATGTTCAAAGGGTCTATGAGGCTAGCAGTTGACAAATGGGGCCGCATTGAGCTCGCCGATCCTGAAGATTTTGTCGTCAAGGAAGACAATAATCTATCTTTAGTCGAGTATGAACTTGTGAATGTTGCAGAGGAATGA

Coding sequence (CDS)

ATGGCGACAGGGAAATCACCTACGCCGGCATCGCAGGAGCTGCAGCAGACCAATGCAGCGCCTAGACCTGGCCTGAGGAAGCCGGTCTTTGTTAAGATCGAACAGCTCAAACCCGGCACCAATGGTCACACACTAATCGTCAAGGTTGTTAGCTCCAATACCGTCTTGCAGAAGGGTCGATCCGTGTCTCAGCACCTTCGCCAGACGCGGATCGCTGAGTGCCTTGTTGGCGACGAAACTGGAACCATTTTGTTCACTGCGCGTAATGATCAAGTTGATCAAGTAAAACCTGGGACAACTATCATTCTTCGAAATGCAAAGATCGACATGTTCAAAGGGTCTATGAGGCTAGCAGTTGACAAATGGGGCCGCATTGAGCTCGCCGATCCTGAAGATTTTGTCGTCAAGGAAGACAATAATCTATCTTTAGTCGAGTATGAACTTGTGAATGTTGCAGAGGAATGA

Protein sequence

MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE*

Homology

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BLAST of CsaV3_4G033400 vs. NCBI nr
Match: XP_004146043.1 (uncharacterized protein At4g28440 [Cucumis sativus] >KGN55099.1 hypothetical protein Csa_012716 [Cucumis sativus])

HSP 1 Score: 302.8 bits (774), Expect = 1.8e-78
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR
Sbjct: 1   MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE 155
           KWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE
Sbjct: 121 KWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE 154

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BLAST of CsaV3_4G033400 vs. NCBI nr
Match: XP_008463705.1 (PREDICTED: uncharacterized protein At4g28440-like [Cucumis melo] >KAA0066804.1 Nucleic acid-binding [Cucumis melo var. makuwa] >TYK27951.1 Nucleic acid-binding [Cucumis melo var. makuwa])

HSP 1 Score: 298.9 bits (764), Expect = 2.5e-77
Identity = 152/154 (98.70%), Postives = 153/154 (99.35%), Query Frame = 0


Query: 1   MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MATGKSPTPASQELQQTNAA RPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR
Sbjct: 1   MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE 155
           KWGRIE+ADPEDFVVKEDNNLSLVEYELVNVAEE
Sbjct: 121 KWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE 154

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BLAST of CsaV3_4G033400 vs. NCBI nr
Match: XP_038899654.1 (uncharacterized protein At4g28440-like [Benincasa hispida])

HSP 1 Score: 296.6 bits (758), Expect = 1.3e-76
Identity = 151/154 (98.05%), Postives = 153/154 (99.35%), Query Frame = 0


Query: 1   MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MATGKSPTPASQELQQ+NAA RPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR
Sbjct: 1   MATGKSPTPASQELQQSNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE 155
           KWGRIELA+PEDFVVKEDNNLSLVEYELVNVAEE
Sbjct: 121 KWGRIELAEPEDFVVKEDNNLSLVEYELVNVAEE 154

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BLAST of CsaV3_4G033400 vs. NCBI nr
Match: XP_022139613.1 (uncharacterized protein At4g28440-like [Momordica charantia])

HSP 1 Score: 273.1 bits (697), Expect = 1.5e-69
Identity = 138/154 (89.61%), Postives = 145/154 (94.16%), Query Frame = 0


Query: 1   MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MATGKSPTPAS E+QQ+NA  RPGLRKPVFVK+EQLKPGTNGHTL VKVV+SNTVLQKGR
Sbjct: 1   MATGKSPTPASPEVQQSNAEARPGLRKPVFVKVEQLKPGTNGHTLTVKVVTSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECLVGDETGTIL TARNDQVD VKP TTII+RNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLVGDETGTILLTARNDQVDLVKPETTIIIRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE 155
           KWGRIEL +P +FVVKEDNNLSLVEYELVNVAEE
Sbjct: 121 KWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE 154

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BLAST of CsaV3_4G033400 vs. NCBI nr
Match: XP_023535412.1 (uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 262.7 bits (670), Expect = 2.0e-66
Identity = 136/154 (88.31%), Postives = 141/154 (91.56%), Query Frame = 0


Query: 1   MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MAT KSPTPAS          R GLRKPVFVK+EQLKPGTNGHTLIVKVVSSNTVLQKGR
Sbjct: 1   MATEKSPTPAS----------RSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECL+GDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE 155
           KWGRIE+ +PE+FVVKEDNNLSLVEYELVNVAEE
Sbjct: 121 KWGRIEVVEPENFVVKEDNNLSLVEYELVNVAEE 144

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BLAST of CsaV3_4G033400 vs. ExPASy Swiss-Prot
Match: O49453 (Uncharacterized protein At4g28440 OS=Arabidopsis thaliana OX=3702 GN=At4g28440 PE=1 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 5.0e-44
Identity = 89/132 (67.42%), Postives = 104/132 (78.79%), Query Frame = 0


Query: 26  RKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR------SVSQHLRQTRIAECLVGDE 85
           RKPVFVK+EQLKPGT GHTL VKV+ +N V+   R      S+S+  + +RI ECL+GDE
Sbjct: 18  RKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDE 77

Query: 86  TGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDN 145
           TG ILFTARNDQVD +KPG T+ILRN++IDMFKG+MRL VDKWGRIE      F VKEDN
Sbjct: 78  TGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDN 137

Query: 146 NLSLVEYELVNV 152
           NLSLVEYEL+NV
Sbjct: 138 NLSLVEYELINV 149

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BLAST of CsaV3_4G033400 vs. ExPASy TrEMBL
Match: A0A0A0L242 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G629450 PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 8.5e-79
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR
Sbjct: 1   MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE 155
           KWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE
Sbjct: 121 KWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE 154

[Close]

BLAST of CsaV3_4G033400 vs. ExPASy TrEMBL
Match: A0A5D3DWE0 (Nucleic acid-binding OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001550 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.2e-77
Identity = 152/154 (98.70%), Postives = 153/154 (99.35%), Query Frame = 0


Query: 1   MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MATGKSPTPASQELQQTNAA RPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR
Sbjct: 1   MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE 155
           KWGRIE+ADPEDFVVKEDNNLSLVEYELVNVAEE
Sbjct: 121 KWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE 154

[Close]

BLAST of CsaV3_4G033400 vs. ExPASy TrEMBL
Match: A0A1S3CKC4 (uncharacterized protein At4g28440-like OS=Cucumis melo OX=3656 GN=LOC103501787 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.2e-77
Identity = 152/154 (98.70%), Postives = 153/154 (99.35%), Query Frame = 0


Query: 1   MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MATGKSPTPASQELQQTNAA RPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR
Sbjct: 1   MATGKSPTPASQELQQTNAAARPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE 155
           KWGRIE+ADPEDFVVKEDNNLSLVEYELVNVAEE
Sbjct: 121 KWGRIEIADPEDFVVKEDNNLSLVEYELVNVAEE 154

[Close]

BLAST of CsaV3_4G033400 vs. ExPASy TrEMBL
Match: A0A6J1CG19 (uncharacterized protein At4g28440-like OS=Momordica charantia OX=3673 GN=LOC111010472 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 7.2e-70
Identity = 138/154 (89.61%), Postives = 145/154 (94.16%), Query Frame = 0


Query: 1   MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MATGKSPTPAS E+QQ+NA  RPGLRKPVFVK+EQLKPGTNGHTL VKVV+SNTVLQKGR
Sbjct: 1   MATGKSPTPASPEVQQSNAEARPGLRKPVFVKVEQLKPGTNGHTLTVKVVTSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECLVGDETGTIL TARNDQVD VKP TTII+RNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLVGDETGTILLTARNDQVDLVKPETTIIIRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE 155
           KWGRIEL +P +FVVKEDNNLSLVEYELVNVAEE
Sbjct: 121 KWGRIELTEPANFVVKEDNNLSLVEYELVNVAEE 154

[Close]

BLAST of CsaV3_4G033400 vs. ExPASy TrEMBL
Match: A0A6J1FBC1 (uncharacterized protein At4g28440-like OS=Cucurbita moschata OX=3662 GN=LOC111442557 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.3e-66
Identity = 135/154 (87.66%), Postives = 141/154 (91.56%), Query Frame = 0


Query: 1   MATGKSPTPASQELQQTNAAPRPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR 60
           MAT KSPTPAS          R GLRKPVFVK+EQLKPGTNGHTLIVKVVSSNTVLQKGR
Sbjct: 1   MATEKSPTPAS----------RSGLRKPVFVKVEQLKPGTNGHTLIVKVVSSNTVLQKGR 60

Query: 61  SVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120
           SVSQHLRQTRIAECL+GDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD
Sbjct: 61  SVSQHLRQTRIAECLIGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVD 120

Query: 121 KWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE 155
           KWGRIE+ +PE+FVVKEDNNLSL+EYELVNVAEE
Sbjct: 121 KWGRIEVVEPENFVVKEDNNLSLIEYELVNVAEE 144

[Close]

BLAST of CsaV3_4G033400 vs. TAIR 10
Match: AT2G33845.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 197.2 bits (500), Expect = 9.7e-51
Identity = 103/156 (66.03%), Postives = 118/156 (75.64%), Query Frame = 0


Query: 4   GKSPTPASQELQQTNAAPRPGL----RKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQK- 63
           G++P P S   + +   P        +KPVFVK++QLKPGT+GHTL VKVV  N+V QK 
Sbjct: 27  GRNPPPPSSSTRTSQNQPPQHTPQEKKKPVFVKVDQLKPGTSGHTLTVKVVDQNSVPQKP 86

Query: 64  GRSVSQHLRQTRIAECLVGDETGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLA 123
           G + S HLR  RI+ECLVGDET  ILFTARNDQV+ +KPG T+ LRNAKIDMFKGSMRLA
Sbjct: 87  GAASSSHLRPARISECLVGDETACILFTARNDQVELMKPGATVNLRNAKIDMFKGSMRLA 146

Query: 124 VDKWGRIELADPEDFVVKEDNNLSLVEYELVNVAEE 155
           VDKWGRIE  +P D  VKEDNNLSLVEYELVNV EE
Sbjct: 147 VDKWGRIEATEPADITVKEDNNLSLVEYELVNVVEE 182

[Close]

BLAST of CsaV3_4G033400 vs. TAIR 10
Match: AT1G23750.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 188.3 bits (477), Expect = 4.5e-48
Identity = 87/132 (65.91%), Postives = 109/132 (82.58%), Query Frame = 0


Query: 22  RPGLRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGRSVSQHLRQTRIAECLVGDETG 81
           + GL+KP F K++QL+PGT+GH + VK+VS+  VLQKGR+     RQ RI+EC+VGDETG
Sbjct: 6   KAGLKKPAFTKVDQLRPGTSGHNVNVKIVSTKMVLQKGRADGPQARQLRISECIVGDETG 65

Query: 82  TILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDNNL 141
            I+FTARNDQVD +K G+T+ LRNAKIDM+KGSMRLAVDKWGR+E+ +P  F VKED N+
Sbjct: 66  VIVFTARNDQVDLMKEGSTVTLRNAKIDMYKGSMRLAVDKWGRVEVTEPASFKVKEDTNM 125

Query: 142 SLVEYELVNVAE 154
           SL+EYELVNV E
Sbjct: 126 SLIEYELVNVVE 137

[Close]

BLAST of CsaV3_4G033400 vs. TAIR 10
Match: AT4G28440.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 178.7 bits (452), Expect = 3.6e-45
Identity = 89/132 (67.42%), Postives = 104/132 (78.79%), Query Frame = 0


Query: 26  RKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQKGR------SVSQHLRQTRIAECLVGDE 85
           RKPVFVK+EQLKPGT GHTL VKV+ +N V+   R      S+S+  + +RI ECL+GDE
Sbjct: 18  RKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDE 77

Query: 86  TGTILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIELADPEDFVVKEDN 145
           TG ILFTARNDQVD +KPG T+ILRN++IDMFKG+MRL VDKWGRIE      F VKEDN
Sbjct: 78  TGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDN 137

Query: 146 NLSLVEYELVNV 152
           NLSLVEYEL+NV
Sbjct: 138 NLSLVEYELINV 149

[Close]

BLAST of CsaV3_4G033400 vs. TAIR 10
Match: AT1G10590.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 178.3 bits (451), Expect = 4.7e-45
Identity = 87/130 (66.92%), Postives = 108/130 (83.08%), Query Frame = 0


Query: 25  LRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQK--GRSVSQHLRQTRIAECLVGDETGT 84
           LRKPVF K+ +L+PGTNGH+L VKVV++  V+Q+  GR +    RQ RIAECLVGDETG 
Sbjct: 8   LRKPVFTKVNELRPGTNGHSLNVKVVNTKMVMQRGGGRPMGPQSRQMRIAECLVGDETGI 67

Query: 85  ILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIELA-DPEDFVVKEDNNL 144
           I+FTARNDQVD +K G+ + LRNAKIDM+KGSMRLAVD+WGR+E+A +P D  VK+DNNL
Sbjct: 68  IIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDITVKDDNNL 127

Query: 145 SLVEYELVNV 152
           SL+EYELV+V
Sbjct: 128 SLIEYELVSV 137

[Close]

BLAST of CsaV3_4G033400 vs. TAIR 10
Match: AT1G10590.3 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 178.3 bits (451), Expect = 4.7e-45
Identity = 87/130 (66.92%), Postives = 108/130 (83.08%), Query Frame = 0


Query: 25  LRKPVFVKIEQLKPGTNGHTLIVKVVSSNTVLQK--GRSVSQHLRQTRIAECLVGDETGT 84
           LRKPVF K+ +L+PGTNGH+L VKVV++  V+Q+  GR +    RQ RIAECLVGDETG 
Sbjct: 22  LRKPVFTKVNELRPGTNGHSLNVKVVNTKMVMQRGGGRPMGPQSRQMRIAECLVGDETGI 81

Query: 85  ILFTARNDQVDQVKPGTTIILRNAKIDMFKGSMRLAVDKWGRIELA-DPEDFVVKEDNNL 144
           I+FTARNDQVD +K G+ + LRNAKIDM+KGSMRLAVD+WGR+E+A +P D  VK+DNNL
Sbjct: 82  IIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDITVKDDNNL 141

Query: 145 SLVEYELVNV 152
           SL+EYELV+V
Sbjct: 142 SLIEYELVSV 151

The following BLAST results are available for this feature:

BLAST of CsaV3_4G033400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146043.1	1.8e-78	100.00	uncharacterized protein At4g28440 [Cucumis sativus] >KGN55099.1 hypothetical pro...	[more]
XP_008463705.1	2.5e-77	98.70	PREDICTED: uncharacterized protein At4g28440-like [Cucumis melo] >KAA0066804.1 N...	[more]
XP_038899654.1	1.3e-76	98.05	uncharacterized protein At4g28440-like [Benincasa hispida]	[more]
XP_022139613.1	1.5e-69	89.61	uncharacterized protein At4g28440-like [Momordica charantia]	[more]
XP_023535412.1	2.0e-66	88.31	uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_4G033400 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49453	5.0e-44	67.42	Uncharacterized protein At4g28440 OS=Arabidopsis thaliana OX=3702 GN=At4g28440 P...	[more]

BLAST of CsaV3_4G033400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L242	8.5e-79	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G629450 PE=4 SV=1	[more]
A0A5D3DWE0	1.2e-77	98.70	Nucleic acid-binding OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384...	[more]
A0A1S3CKC4	1.2e-77	98.70	uncharacterized protein At4g28440-like OS=Cucumis melo OX=3656 GN=LOC103501787 P...	[more]
A0A6J1CG19	7.2e-70	89.61	uncharacterized protein At4g28440-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1FBC1	1.3e-66	87.66	uncharacterized protein At4g28440-like OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]

BLAST of CsaV3_4G033400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G33845.1	9.7e-51	66.03	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G23750.1	4.5e-48	65.91	Nucleic acid-binding, OB-fold-like protein	[more]
AT4G28440.1	3.6e-45	67.42	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G10590.1	4.7e-45	66.92	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G10590.3	4.7e-45	66.92	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 40..143 e-value: 9.6E-44 score: 149.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	PANTHER	PTHR31472	OS05G0244600 PROTEIN	coord: 15..154
None	No IPR available	PANTHER	PTHR31472:SF23	F11M21.26 PROTEIN	coord: 15..154
None	No IPR available	CDD	cd04491	SoSSB_OBF	coord: 44..127 e-value: 1.25709E-18 score: 73.4261
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 24..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G033400.1	CsaV3_4G033400.1	mRNA